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[matrix] Annotation of /pkg/ChangeLog
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Annotation of /pkg/ChangeLog

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Revision 78 - (view) (download)

1 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
2 :    
3 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
4 :    
5 :     * src/Makefile.win: Remove unneeded ranlib call
6 :    
7 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
8 :    
9 :     * DESCRIPTION (Version): New release
10 :    
11 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
12 :    
13 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
14 :    
15 :     * src/triplet_to_col.c: Create triplet_to_col as a native
16 :     function, not the version from umfpack. There were problems with
17 :     the configuration of UMFPACK for 64-bit processors and there was
18 :     only one umfpack routine being used so I moved it here.
19 :    
20 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
21 :    
22 :     * src/ssclme.c (ssclme_variances): New function.
23 :    
24 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
25 :    
26 :     * src/ssclme.c (ssclme_fitted): Added function.
27 :    
28 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
29 :    
30 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
31 :     store the dimnames in the XtX and bVar slots
32 :     (ssclme_update_mm): Change the dimensions of the bVar slot
33 :     components and the returned value from ssclme_ranef.
34 :    
35 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
36 :    
37 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
38 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
39 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
40 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
41 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
42 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
43 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
44 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
45 :     Moved the pdMat classes from the lme4 package.
46 :    
47 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
48 :    
49 :     * man/ssclme-class.Rd: Update definition and documentation of the
50 :     ssclme class to include the DIsqrt slot.
51 :    
52 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
53 :     (much faster using dsyrk, a level 3 BLAS routine).
54 :    
55 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
56 :    
57 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
58 :    
59 :     * tests/ssclme.R: Modify the test to account for the permutation
60 :     of the levels of the grouping factors.
61 :    
62 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
63 :    
64 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
65 :     directly into the ssclme class definition.
66 :    
67 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
68 :    
69 :     * DESCRIPTION (Date): New release
70 :    
71 :     * man/ssclme-class.Rd: new file.
72 :    
73 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
74 :     works and it's fast!
75 :    
76 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
77 :    
78 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
79 :    
80 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
81 :    
82 :     * DESCRIPTION (Date): New release
83 :    
84 :     * NAMESPACE: Don't export ssclme.
85 :    
86 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
87 :     school data.
88 :    
89 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
90 :    
91 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
92 :     keep track of the fixed-effects and the response. Counts also
93 :     gets an extra element, which is always one.
94 :    
95 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
96 :    
97 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
98 :    
99 :     * src/cscMatrix.c (csc_transpose): new function
100 :    
101 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
102 :     (csc_components_transpose): new function
103 :    
104 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
105 :    
106 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
107 :     triplets
108 :    
109 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
110 :    
111 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
112 :    
113 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
114 :     and all other .h files in src.
115 :    
116 :     * src/Makefile.win: This and other Makefile.win files contributed
117 :     by Brian Ripley.
118 :    
119 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
120 :    
121 :     * R/syMatrix.R: Added methods for "%*%".
122 :    
123 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
124 :     poMatrix object.
125 :    
126 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
127 :    
128 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
129 :    
130 :     2004-01-25 Douglas Bates <bates@bates2_home>
131 :    
132 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
133 :    
134 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
135 :     of nrow.
136 :    
137 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
138 :    
139 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
140 :     subdirectories.
141 :    
142 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
143 :    
144 :     * src/taucs.h: Accidently referred to global header files
145 :     instead of local files.
146 :    
147 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
148 :    
149 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
150 :     and methods and replaced all classes with S4 classes.
151 :    
152 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
153 :    
154 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
155 :    
156 :     * src/R_LapackPP.cc: Change method of calculating determinants
157 :    
158 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
159 :    
160 :     * DESCRIPTION (Version): removed empty data directory as requested
161 :     by CRAN maintainers. Changed version number and date.
162 :    
163 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
164 :    
165 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
166 :     under Windows.
167 :    
168 :     * Added configure.win and src/Makevars.win as requested by Brian
169 :     Ripley.
170 :    
171 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
172 :    
173 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
174 :     Hornik.
175 :    
176 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
177 :    
178 :     * configure.ac: Replaced configure.in with configure.ac
179 :     contributed by Kurt Hornik.
180 :    
181 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
182 :     version for R-1.5.0
183 :    
184 :    
185 :     2001-12-10 Douglas Bates <bates@stat.wisc.edu>
186 :    
187 :     * man/eigen.Rd: Removed the .Alias in the example

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