SCM

SCM Repository

[matrix] Annotation of /pkg/ChangeLog
ViewVC logotype

Annotation of /pkg/ChangeLog

Parent Directory Parent Directory | Revision Log Revision Log


Revision 676 - (view) (download)

1 : maechler 676 2005-03-26 Martin Maechler <maechler@stat.math.ethz.ch>
2 :    
3 :     * R/AllClass.R: add two virtual sparse classes ``on top''
4 :    
5 :     2005-03-24 Martin Maechler <maechler@stat.math.ethz.ch>
6 :    
7 :     * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
8 :     correspondingly fix examples and tests/ since new()
9 :     doesn't work for virtual classes.
10 :    
11 : maechler 658 2005-03-17 Martin Maechler <maechler@stat.math.ethz.ch>
12 :    
13 :     * R/Matrix.R (as.matrix): method and one for unname()
14 :     * tests/dpoMatrix.R: tests should now be less platform dependent;
15 :     also run for R 2.1.0; using as.matrix()
16 :    
17 :     2005-03-15 Douglas Bates <bates@bates1-home>
18 :    
19 :     * R/pMatrix.R: "pMatrix" class added
20 :     * ....
21 :    
22 : bates 645 2005-03-14 Douglas Bates <bates@bates1-home>
23 :    
24 :     * R/dtpMatrix.R: Add unpack method and an example.
25 :    
26 :     * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
27 :     of general symmetric matrices and associated S4 methods.
28 :    
29 : maechler 658 2005-03-10 Martin Maechler <maechler@stat.math.ethz.ch>
30 :     +
31 :     2005-03-05 Martin Maechler <maechler@stat.math.ethz.ch>
32 :    
33 :     * R/dgeMatrix.R (setAs): and many other files: more coercion,
34 :     crossprod() and "%*%" methods added; tests, too.
35 :     * tests/matprod.R: new, for testing these
36 :    
37 : bates 599 2005-03-03 Douglas Bates <bates@bates1-home>
38 :    
39 :     * src/lmer.c (lmer_fitted): Added.
40 :    
41 : bates 596 2005-03-02 Douglas Bates <bates@bates1-home>
42 :    
43 :     * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
44 :    
45 : bates 582 2005-02-28 Douglas Bates <bates@bates1-home>
46 :    
47 :     * src/*.c,po/,inst/po: Internationalization and localization of
48 :     the package.
49 :    
50 :     * src/ldl.[ch]: Removed these as their contents are referenced in the
51 :     R_ldl.c file.
52 :    
53 :     * src/flame.[ch]: Removed these source files.
54 : maechler 658
55 : bates 582 * src/dtrMatrix.c (make_array_triangular): Move to Mutils
56 :    
57 :     * src/LU.[ch],src/init.c: absorb in factorizations
58 :    
59 :     * src/Mutils.h: prepare for internationalization
60 :    
61 :     * src/cblas.h: move the enum definitions to Mutils.h and remove
62 :     this file
63 :    
64 : maechler 578 2005-02-26 Martin Maechler <maechler@stat.math.ethz.ch>
65 :    
66 : maechler 579 * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
67 :    
68 :     * R/dtrMatrix.R: fix t() method
69 :    
70 : maechler 578 * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
71 : maechler 658 * NAMESPACE: export them (and import generics from "methods")
72 : maechler 578 * tests/group-methods.R : and test them.
73 :    
74 :     * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
75 :     border case
76 :    
77 :     2005-02-24 Douglas Bates <bates@stat.wisc.edu>
78 :    
79 : maechler 658 * DESCRIPTION (Version): 0.95-2 released to CRAN
80 : maechler 578
81 :     * src/dgBCMatrix.c:
82 :     * src/lmer.c: many changes
83 :     * ...
84 :    
85 : maechler 512 2005-02-04 Martin Maechler <maechler@stat.math.ethz.ch>
86 :    
87 :     * R/Matrix.R: add more sophisticated show() method.
88 :    
89 : maechler 578 2005-02-02 Douglas Bates <bates@stat.wisc.edu>
90 :    
91 :     * */* : almost complete reorganization of classes.
92 :    
93 : bates 460 2005-01-26 Douglas Bates <bates@bates7>
94 :    
95 :     * R/AllGeneric.R: Added matrix exponential generic expm and a method
96 :     for the geMatrix class.
97 :    
98 :     2005-01-24 Douglas Bates <bates@bates7>
99 :    
100 :     * src/Makefile (clean): Remove *.a and *.so
101 :    
102 :     * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
103 :    
104 :     2005-01-23 Douglas Bates <bates@bates7>
105 :    
106 : maechler 658 * src/lmer.c (Lind): Definition of Lind was backwards. This only
107 : bates 460 had an effect in cases with more than 2 grouping factors.
108 :    
109 : bates 415 2005-01-03 Douglas Bates <bates@bates1-home>
110 :    
111 :     * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
112 :    
113 : bates 410 2004-12-23 Douglas Bates <bates@bates1-home>
114 :    
115 :     * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
116 :     and R_useDynamicSymbols (suggested by B.D.Ripley).
117 :    
118 : bates 392 2004-12-14 Douglas Bates <bates@bates1-home>
119 :    
120 :     * R/sscMatrix.R: Add determinant methods
121 :    
122 :     * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
123 :     for tripletMatrix to matrix.
124 :    
125 : bates 388 2004-12-13 Douglas Bates <bates@bates1-home>
126 :    
127 : bates 392 * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
128 :     no longer used.
129 :    
130 : bates 388 * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
131 :     with dynamic allocation of scratch arrays.
132 :    
133 :     * src/ssclme.c (ssclme_copy_ctab): Fixed bug in creation of ZtZ
134 :     for multivariate random effects with multiple grouping factors.
135 :     Fixes part but not all of #15.
136 :    
137 : bates 375 2004-12-03 Douglas Bates <bates@bates1-home>
138 :    
139 :     * src/lmeRep.c (lmeRep_factor): order of operations for multiple
140 :     scalar grouping factors corrected.
141 :    
142 :     2004-11-29 Douglas Bates <bates@bates1-home>
143 :    
144 :     * src/bCrosstab.c: remove diag_update which is no longer used
145 :    
146 : bates 350 2004-11-16 Douglas Bates <bates@bates1-home>
147 :    
148 :     * src/Metis_utils.c: Move metis.h include to C sources so that the
149 :     .h file can be included.
150 :    
151 : bates 342 2004-11-12 Douglas Bates <bates@bates1-home>
152 :    
153 : bates 350 * src/LU.c,geMatrix.c,trMatrix.c, etc.:
154 : bates 342 Complete allocation of slots in NEW_OBJECT.
155 :    
156 :     * src/Mutils.h: Moved list of symbols to an include file
157 :    
158 :     2004-11-11 Douglas Bates <bates@bates1-home>
159 :    
160 :     * src/geMutils.c (Matrix_init): remove unused function
161 :    
162 :     2004-11-10 Douglas Bates <bates@bates1-home>
163 :    
164 :     * src/cscMatrix.c (csc_to_imagemat): removed unused function
165 :    
166 : bates 327 2004-11-05 Douglas Bates <bates@bates1-home>
167 :    
168 :     * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
169 :    
170 : bates 303 2004-10-27 Douglas Bates <bates@bates1-home>
171 :    
172 :     * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
173 :    
174 : bates 296 2004-10-04 Douglas Bates <bates@bates1-home>
175 :    
176 :     * src/init.c: Created R_init_Matrix and added registration of C
177 :     routines.
178 :    
179 : bates 283 2004-10-02 Douglas Bates <bates@bates1-home>
180 :    
181 :     * R/tripletMatrix.R: Force a require(lattice) for the image methods.
182 :    
183 : bates 229 2004-06-15 Douglas Bates <bates@bates7>
184 :    
185 :     * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
186 :    
187 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
188 :    
189 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
190 :    
191 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
192 :    
193 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
194 :     ssclme_update_mm
195 :    
196 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
197 :    
198 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
199 :     in the order of unconstrained and constrained parameters.
200 :     (ssclme_gradient): Added the gradients (not yet correct for
201 :     multidimensional, unconstrained case).
202 :    
203 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
204 :    
205 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
206 :    
207 :     * src/Makefile.win: Remove unneeded ranlib call
208 :    
209 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
210 :    
211 :     * DESCRIPTION (Version): New release
212 :    
213 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
214 :    
215 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
216 :    
217 :     * src/triplet_to_col.c: Create triplet_to_col as a native
218 : maechler 658 function, not the version from umfpack. There were problems with
219 : bates 49 the configuration of UMFPACK for 64-bit processors and there was
220 :     only one umfpack routine being used so I moved it here.
221 :    
222 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
223 :    
224 :     * src/ssclme.c (ssclme_variances): New function.
225 :    
226 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
227 :    
228 :     * src/ssclme.c (ssclme_fitted): Added function.
229 :    
230 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
231 :    
232 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
233 :     store the dimnames in the XtX and bVar slots
234 :     (ssclme_update_mm): Change the dimensions of the bVar slot
235 :     components and the returned value from ssclme_ranef.
236 :    
237 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
238 :    
239 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
240 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
241 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
242 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
243 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
244 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
245 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
246 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
247 :     Moved the pdMat classes from the lme4 package.
248 :    
249 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
250 :    
251 :     * man/ssclme-class.Rd: Update definition and documentation of the
252 :     ssclme class to include the DIsqrt slot.
253 :    
254 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
255 :     (much faster using dsyrk, a level 3 BLAS routine).
256 :    
257 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
258 :    
259 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
260 :    
261 :     * tests/ssclme.R: Modify the test to account for the permutation
262 :     of the levels of the grouping factors.
263 :    
264 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
265 :    
266 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
267 :     directly into the ssclme class definition.
268 :    
269 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
270 :    
271 :     * DESCRIPTION (Date): New release
272 :    
273 :     * man/ssclme-class.Rd: new file.
274 :    
275 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
276 :     works and it's fast!
277 :    
278 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
279 :    
280 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
281 :    
282 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
283 :    
284 :     * DESCRIPTION (Date): New release
285 :    
286 :     * NAMESPACE: Don't export ssclme.
287 :    
288 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
289 :     school data.
290 :    
291 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
292 :    
293 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
294 :     keep track of the fixed-effects and the response. Counts also
295 :     gets an extra element, which is always one.
296 :    
297 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
298 :    
299 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
300 :    
301 :     * src/cscMatrix.c (csc_transpose): new function
302 :    
303 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
304 :     (csc_components_transpose): new function
305 :    
306 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
307 :    
308 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
309 :     triplets
310 :    
311 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
312 :    
313 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
314 :    
315 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
316 :     and all other .h files in src.
317 :    
318 :     * src/Makefile.win: This and other Makefile.win files contributed
319 :     by Brian Ripley.
320 :    
321 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
322 :    
323 :     * R/syMatrix.R: Added methods for "%*%".
324 :    
325 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
326 :     poMatrix object.
327 :    
328 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
329 :    
330 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
331 :    
332 :     2004-01-25 Douglas Bates <bates@bates2_home>
333 :    
334 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
335 :    
336 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
337 :     of nrow.
338 :    
339 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
340 :    
341 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
342 :     subdirectories.
343 :    
344 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
345 :    
346 :     * src/taucs.h: Accidently referred to global header files
347 :     instead of local files.
348 :    
349 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
350 :    
351 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
352 :     and methods and replaced all classes with S4 classes.
353 :    
354 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
355 :    
356 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
357 :    
358 :     * src/R_LapackPP.cc: Change method of calculating determinants
359 :    
360 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
361 :    
362 :     * DESCRIPTION (Version): removed empty data directory as requested
363 :     by CRAN maintainers. Changed version number and date.
364 :    
365 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
366 :    
367 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
368 :     under Windows.
369 :    
370 :     * Added configure.win and src/Makevars.win as requested by Brian
371 :     Ripley.
372 :    
373 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
374 :    
375 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
376 :     Hornik.
377 :    
378 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
379 :    
380 :     * configure.ac: Replaced configure.in with configure.ac
381 :     contributed by Kurt Hornik.
382 :    
383 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
384 :     version for R-1.5.0
385 :    
386 : maechler 512
387 : bates 10 2001-12-10 Douglas Bates <bates@stat.wisc.edu>
388 :    
389 :     * man/eigen.Rd: Removed the .Alias in the example

root@r-forge.r-project.org
ViewVC Help
Powered by ViewVC 1.0.0  
Thanks to:
Vienna University of Economics and Business Powered By FusionForge