SCM

SCM Repository

[matrix] Annotation of /pkg/ChangeLog
ViewVC logotype

Annotation of /pkg/ChangeLog

Parent Directory Parent Directory | Revision Log Revision Log


Revision 645 - (view) (download)

1 : bates 645 2005-03-14 Douglas Bates <bates@bates1-home>
2 :    
3 :     * R/dtpMatrix.R: Add unpack method and an example.
4 :    
5 :     * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
6 :     of general symmetric matrices and associated S4 methods.
7 :    
8 : bates 599 2005-03-03 Douglas Bates <bates@bates1-home>
9 :    
10 :     * src/lmer.c (lmer_fitted): Added.
11 :    
12 : bates 596 2005-03-02 Douglas Bates <bates@bates1-home>
13 :    
14 :     * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
15 :    
16 : bates 582 2005-02-28 Douglas Bates <bates@bates1-home>
17 :    
18 :     * src/*.c,po/,inst/po: Internationalization and localization of
19 :     the package.
20 :    
21 :     * src/ldl.[ch]: Removed these as their contents are referenced in the
22 :     R_ldl.c file.
23 :    
24 :     * src/flame.[ch]: Removed these source files.
25 :    
26 :     * src/dtrMatrix.c (make_array_triangular): Move to Mutils
27 :    
28 :     * src/LU.[ch],src/init.c: absorb in factorizations
29 :    
30 :     * src/Mutils.h: prepare for internationalization
31 :    
32 :     * src/cblas.h: move the enum definitions to Mutils.h and remove
33 :     this file
34 :    
35 : maechler 578 2005-02-26 Martin Maechler <maechler@stat.math.ethz.ch>
36 :    
37 : maechler 579 * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
38 :    
39 :     * R/dtrMatrix.R: fix t() method
40 :    
41 : maechler 578 * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
42 :     * NAMESPACE: export them (and import generics from "methods")
43 :     * tests/group-methods.R : and test them.
44 :    
45 :     * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
46 :     border case
47 :    
48 :     2005-02-24 Douglas Bates <bates@stat.wisc.edu>
49 :    
50 :     * DESCRIPTION (Version): 0.95-2 released to CRAN
51 :    
52 :     * src/dgBCMatrix.c:
53 :     * src/lmer.c: many changes
54 :     * ...
55 :    
56 : maechler 512 2005-02-04 Martin Maechler <maechler@stat.math.ethz.ch>
57 :    
58 :     * R/Matrix.R: add more sophisticated show() method.
59 :    
60 : maechler 578 2005-02-02 Douglas Bates <bates@stat.wisc.edu>
61 :    
62 :     * */* : almost complete reorganization of classes.
63 :    
64 : bates 460 2005-01-26 Douglas Bates <bates@bates7>
65 :    
66 :     * R/AllGeneric.R: Added matrix exponential generic expm and a method
67 :     for the geMatrix class.
68 :    
69 :     2005-01-24 Douglas Bates <bates@bates7>
70 :    
71 :     * src/Makefile (clean): Remove *.a and *.so
72 :    
73 :     * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
74 :    
75 :     2005-01-23 Douglas Bates <bates@bates7>
76 :    
77 :     * src/lmer.c (Lind): Definition of Lind was backwards. This only
78 :     had an effect in cases with more than 2 grouping factors.
79 :    
80 : bates 415 2005-01-03 Douglas Bates <bates@bates1-home>
81 :    
82 :     * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
83 :    
84 : bates 410 2004-12-23 Douglas Bates <bates@bates1-home>
85 :    
86 :     * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
87 :     and R_useDynamicSymbols (suggested by B.D.Ripley).
88 :    
89 : bates 392 2004-12-14 Douglas Bates <bates@bates1-home>
90 :    
91 :     * R/sscMatrix.R: Add determinant methods
92 :    
93 :     * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
94 :     for tripletMatrix to matrix.
95 :    
96 : bates 388 2004-12-13 Douglas Bates <bates@bates1-home>
97 :    
98 : bates 392 * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
99 :     no longer used.
100 :    
101 : bates 388 * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
102 :     with dynamic allocation of scratch arrays.
103 :    
104 :     * src/ssclme.c (ssclme_copy_ctab): Fixed bug in creation of ZtZ
105 :     for multivariate random effects with multiple grouping factors.
106 :     Fixes part but not all of #15.
107 :    
108 : bates 375 2004-12-03 Douglas Bates <bates@bates1-home>
109 :    
110 :     * src/lmeRep.c (lmeRep_factor): order of operations for multiple
111 :     scalar grouping factors corrected.
112 :    
113 :     2004-11-29 Douglas Bates <bates@bates1-home>
114 :    
115 :     * src/bCrosstab.c: remove diag_update which is no longer used
116 :    
117 : bates 350 2004-11-16 Douglas Bates <bates@bates1-home>
118 :    
119 :     * src/Metis_utils.c: Move metis.h include to C sources so that the
120 :     .h file can be included.
121 :    
122 : bates 342 2004-11-12 Douglas Bates <bates@bates1-home>
123 :    
124 : bates 350 * src/LU.c,geMatrix.c,trMatrix.c, etc.:
125 : bates 342 Complete allocation of slots in NEW_OBJECT.
126 :    
127 :     * src/Mutils.h: Moved list of symbols to an include file
128 :    
129 :     2004-11-11 Douglas Bates <bates@bates1-home>
130 :    
131 :     * src/geMutils.c (Matrix_init): remove unused function
132 :    
133 :     2004-11-10 Douglas Bates <bates@bates1-home>
134 :    
135 :     * src/cscMatrix.c (csc_to_imagemat): removed unused function
136 :    
137 : bates 327 2004-11-05 Douglas Bates <bates@bates1-home>
138 :    
139 :     * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
140 :    
141 : bates 303 2004-10-27 Douglas Bates <bates@bates1-home>
142 :    
143 :     * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
144 :    
145 : bates 296 2004-10-04 Douglas Bates <bates@bates1-home>
146 :    
147 :     * src/init.c: Created R_init_Matrix and added registration of C
148 :     routines.
149 :    
150 : bates 283 2004-10-02 Douglas Bates <bates@bates1-home>
151 :    
152 :     * R/tripletMatrix.R: Force a require(lattice) for the image methods.
153 :    
154 : bates 229 2004-06-15 Douglas Bates <bates@bates7>
155 :    
156 :     * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
157 :    
158 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
159 :    
160 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
161 :    
162 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
163 :    
164 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
165 :     ssclme_update_mm
166 :    
167 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
168 :    
169 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
170 :     in the order of unconstrained and constrained parameters.
171 :     (ssclme_gradient): Added the gradients (not yet correct for
172 :     multidimensional, unconstrained case).
173 :    
174 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
175 :    
176 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
177 :    
178 :     * src/Makefile.win: Remove unneeded ranlib call
179 :    
180 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
181 :    
182 :     * DESCRIPTION (Version): New release
183 :    
184 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
185 :    
186 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
187 :    
188 :     * src/triplet_to_col.c: Create triplet_to_col as a native
189 :     function, not the version from umfpack. There were problems with
190 :     the configuration of UMFPACK for 64-bit processors and there was
191 :     only one umfpack routine being used so I moved it here.
192 :    
193 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
194 :    
195 :     * src/ssclme.c (ssclme_variances): New function.
196 :    
197 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
198 :    
199 :     * src/ssclme.c (ssclme_fitted): Added function.
200 :    
201 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
202 :    
203 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
204 :     store the dimnames in the XtX and bVar slots
205 :     (ssclme_update_mm): Change the dimensions of the bVar slot
206 :     components and the returned value from ssclme_ranef.
207 :    
208 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
209 :    
210 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
211 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
212 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
213 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
214 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
215 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
216 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
217 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
218 :     Moved the pdMat classes from the lme4 package.
219 :    
220 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
221 :    
222 :     * man/ssclme-class.Rd: Update definition and documentation of the
223 :     ssclme class to include the DIsqrt slot.
224 :    
225 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
226 :     (much faster using dsyrk, a level 3 BLAS routine).
227 :    
228 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
229 :    
230 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
231 :    
232 :     * tests/ssclme.R: Modify the test to account for the permutation
233 :     of the levels of the grouping factors.
234 :    
235 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
236 :    
237 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
238 :     directly into the ssclme class definition.
239 :    
240 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
241 :    
242 :     * DESCRIPTION (Date): New release
243 :    
244 :     * man/ssclme-class.Rd: new file.
245 :    
246 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
247 :     works and it's fast!
248 :    
249 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
250 :    
251 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
252 :    
253 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
254 :    
255 :     * DESCRIPTION (Date): New release
256 :    
257 :     * NAMESPACE: Don't export ssclme.
258 :    
259 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
260 :     school data.
261 :    
262 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
263 :    
264 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
265 :     keep track of the fixed-effects and the response. Counts also
266 :     gets an extra element, which is always one.
267 :    
268 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
269 :    
270 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
271 :    
272 :     * src/cscMatrix.c (csc_transpose): new function
273 :    
274 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
275 :     (csc_components_transpose): new function
276 :    
277 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
278 :    
279 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
280 :     triplets
281 :    
282 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
283 :    
284 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
285 :    
286 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
287 :     and all other .h files in src.
288 :    
289 :     * src/Makefile.win: This and other Makefile.win files contributed
290 :     by Brian Ripley.
291 :    
292 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
293 :    
294 :     * R/syMatrix.R: Added methods for "%*%".
295 :    
296 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
297 :     poMatrix object.
298 :    
299 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
300 :    
301 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
302 :    
303 :     2004-01-25 Douglas Bates <bates@bates2_home>
304 :    
305 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
306 :    
307 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
308 :     of nrow.
309 :    
310 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
311 :    
312 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
313 :     subdirectories.
314 :    
315 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
316 :    
317 :     * src/taucs.h: Accidently referred to global header files
318 :     instead of local files.
319 :    
320 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
321 :    
322 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
323 :     and methods and replaced all classes with S4 classes.
324 :    
325 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
326 :    
327 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
328 :    
329 :     * src/R_LapackPP.cc: Change method of calculating determinants
330 :    
331 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
332 :    
333 :     * DESCRIPTION (Version): removed empty data directory as requested
334 :     by CRAN maintainers. Changed version number and date.
335 :    
336 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
337 :    
338 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
339 :     under Windows.
340 :    
341 :     * Added configure.win and src/Makevars.win as requested by Brian
342 :     Ripley.
343 :    
344 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
345 :    
346 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
347 :     Hornik.
348 :    
349 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
350 :    
351 :     * configure.ac: Replaced configure.in with configure.ac
352 :     contributed by Kurt Hornik.
353 :    
354 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
355 :     version for R-1.5.0
356 :    
357 : maechler 512
358 : bates 10 2001-12-10 Douglas Bates <bates@stat.wisc.edu>
359 :    
360 :     * man/eigen.Rd: Removed the .Alias in the example

root@r-forge.r-project.org
ViewVC Help
Powered by ViewVC 1.0.0  
Thanks to:
Vienna University of Economics and Business Powered By FusionForge