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Annotation of /pkg/ChangeLog

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Revision 49 - (view) (download)

1 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
2 :    
3 :     * src/triplet_to_col.c: Create triplet_to_col as a native
4 :     function, not the version from umfpack. There were problems with
5 :     the configuration of UMFPACK for 64-bit processors and there was
6 :     only one umfpack routine being used so I moved it here.
7 :    
8 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
9 :    
10 :     * src/ssclme.c (ssclme_variances): New function.
11 :    
12 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
13 :    
14 :     * src/ssclme.c (ssclme_fitted): Added function.
15 :    
16 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
17 :    
18 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
19 :     store the dimnames in the XtX and bVar slots
20 :     (ssclme_update_mm): Change the dimensions of the bVar slot
21 :     components and the returned value from ssclme_ranef.
22 :    
23 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
24 :    
25 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
26 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
27 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
28 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
29 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
30 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
31 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
32 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
33 :     Moved the pdMat classes from the lme4 package.
34 :    
35 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
36 :    
37 :     * man/ssclme-class.Rd: Update definition and documentation of the
38 :     ssclme class to include the DIsqrt slot.
39 :    
40 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
41 :     (much faster using dsyrk, a level 3 BLAS routine).
42 :    
43 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
44 :    
45 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
46 :    
47 :     * tests/ssclme.R: Modify the test to account for the permutation
48 :     of the levels of the grouping factors.
49 :    
50 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
51 :    
52 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
53 :     directly into the ssclme class definition.
54 :    
55 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
56 :    
57 :     * DESCRIPTION (Date): New release
58 :    
59 :     * man/ssclme-class.Rd: new file.
60 :    
61 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
62 :     works and it's fast!
63 :    
64 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
65 :    
66 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
67 :    
68 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
69 :    
70 :     * DESCRIPTION (Date): New release
71 :    
72 :     * NAMESPACE: Don't export ssclme.
73 :    
74 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
75 :     school data.
76 :    
77 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
78 :    
79 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
80 :     keep track of the fixed-effects and the response. Counts also
81 :     gets an extra element, which is always one.
82 :    
83 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
84 :    
85 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
86 :    
87 :     * src/cscMatrix.c (csc_transpose): new function
88 :    
89 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
90 :     (csc_components_transpose): new function
91 :    
92 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
93 :    
94 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
95 :     triplets
96 :    
97 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
98 :    
99 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
100 :    
101 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
102 :     and all other .h files in src.
103 :    
104 :     * src/Makefile.win: This and other Makefile.win files contributed
105 :     by Brian Ripley.
106 :    
107 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
108 :    
109 :     * R/syMatrix.R: Added methods for "%*%".
110 :    
111 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
112 :     poMatrix object.
113 :    
114 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
115 :    
116 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
117 :    
118 :     2004-01-25 Douglas Bates <bates@bates2_home>
119 :    
120 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
121 :    
122 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
123 :     of nrow.
124 :    
125 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
126 :    
127 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
128 :     subdirectories.
129 :    
130 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
131 :    
132 :     * src/taucs.h: Accidently referred to global header files
133 :     instead of local files.
134 :    
135 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
136 :    
137 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
138 :     and methods and replaced all classes with S4 classes.
139 :    
140 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
141 :    
142 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
143 :    
144 :     * src/R_LapackPP.cc: Change method of calculating determinants
145 :    
146 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
147 :    
148 :     * DESCRIPTION (Version): removed empty data directory as requested
149 :     by CRAN maintainers. Changed version number and date.
150 :    
151 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
152 :    
153 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
154 :     under Windows.
155 :    
156 :     * Added configure.win and src/Makevars.win as requested by Brian
157 :     Ripley.
158 :    
159 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
160 :    
161 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
162 :     Hornik.
163 :    
164 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
165 :    
166 :     * configure.ac: Replaced configure.in with configure.ac
167 :     contributed by Kurt Hornik.
168 :    
169 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
170 :     version for R-1.5.0
171 :    
172 :    
173 :     2001-12-10 Douglas Bates <bates@stat.wisc.edu>
174 :    
175 :     * man/eigen.Rd: Removed the .Alias in the example

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