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[matrix] Annotation of /pkg/ChangeLog
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Annotation of /pkg/ChangeLog

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1 : bates 410 2004-12-23 Douglas Bates <bates@bates1-home>
2 :    
3 :     * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
4 :     and R_useDynamicSymbols (suggested by B.D.Ripley).
5 :    
6 : bates 392 2004-12-14 Douglas Bates <bates@bates1-home>
7 :    
8 :     * R/sscMatrix.R: Add determinant methods
9 :    
10 :     * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
11 :     for tripletMatrix to matrix.
12 :    
13 : bates 388 2004-12-13 Douglas Bates <bates@bates1-home>
14 :    
15 : bates 392 * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
16 :     no longer used.
17 :    
18 : bates 388 * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
19 :     with dynamic allocation of scratch arrays.
20 :    
21 :     * src/ssclme.c (ssclme_copy_ctab): Fixed bug in creation of ZtZ
22 :     for multivariate random effects with multiple grouping factors.
23 :     Fixes part but not all of #15.
24 :    
25 : bates 375 2004-12-03 Douglas Bates <bates@bates1-home>
26 :    
27 :     * src/lmeRep.c (lmeRep_factor): order of operations for multiple
28 :     scalar grouping factors corrected.
29 :    
30 :     2004-11-29 Douglas Bates <bates@bates1-home>
31 :    
32 :     * src/bCrosstab.c: remove diag_update which is no longer used
33 :    
34 : bates 350 2004-11-16 Douglas Bates <bates@bates1-home>
35 :    
36 :     * src/Metis_utils.c: Move metis.h include to C sources so that the
37 :     .h file can be included.
38 :    
39 : bates 342 2004-11-12 Douglas Bates <bates@bates1-home>
40 :    
41 : bates 350 * src/LU.c,geMatrix.c,trMatrix.c, etc.:
42 : bates 342 Complete allocation of slots in NEW_OBJECT.
43 :    
44 :     * src/Mutils.h: Moved list of symbols to an include file
45 :    
46 :     2004-11-11 Douglas Bates <bates@bates1-home>
47 :    
48 :     * src/geMutils.c (Matrix_init): remove unused function
49 :    
50 :     2004-11-10 Douglas Bates <bates@bates1-home>
51 :    
52 :     * src/cscMatrix.c (csc_to_imagemat): removed unused function
53 :    
54 : bates 327 2004-11-05 Douglas Bates <bates@bates1-home>
55 :    
56 :     * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
57 :    
58 : bates 303 2004-10-27 Douglas Bates <bates@bates1-home>
59 :    
60 :     * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
61 :    
62 : bates 296 2004-10-04 Douglas Bates <bates@bates1-home>
63 :    
64 :     * src/init.c: Created R_init_Matrix and added registration of C
65 :     routines.
66 :    
67 : bates 283 2004-10-02 Douglas Bates <bates@bates1-home>
68 :    
69 :     * R/tripletMatrix.R: Force a require(lattice) for the image methods.
70 :    
71 : bates 229 2004-06-15 Douglas Bates <bates@bates7>
72 :    
73 :     * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
74 :    
75 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
76 :    
77 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
78 :    
79 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
80 :    
81 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
82 :     ssclme_update_mm
83 :    
84 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
85 :    
86 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
87 :     in the order of unconstrained and constrained parameters.
88 :     (ssclme_gradient): Added the gradients (not yet correct for
89 :     multidimensional, unconstrained case).
90 :    
91 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
92 :    
93 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
94 :    
95 :     * src/Makefile.win: Remove unneeded ranlib call
96 :    
97 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
98 :    
99 :     * DESCRIPTION (Version): New release
100 :    
101 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
102 :    
103 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
104 :    
105 :     * src/triplet_to_col.c: Create triplet_to_col as a native
106 :     function, not the version from umfpack. There were problems with
107 :     the configuration of UMFPACK for 64-bit processors and there was
108 :     only one umfpack routine being used so I moved it here.
109 :    
110 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
111 :    
112 :     * src/ssclme.c (ssclme_variances): New function.
113 :    
114 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
115 :    
116 :     * src/ssclme.c (ssclme_fitted): Added function.
117 :    
118 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
119 :    
120 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
121 :     store the dimnames in the XtX and bVar slots
122 :     (ssclme_update_mm): Change the dimensions of the bVar slot
123 :     components and the returned value from ssclme_ranef.
124 :    
125 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
126 :    
127 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
128 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
129 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
130 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
131 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
132 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
133 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
134 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
135 :     Moved the pdMat classes from the lme4 package.
136 :    
137 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
138 :    
139 :     * man/ssclme-class.Rd: Update definition and documentation of the
140 :     ssclme class to include the DIsqrt slot.
141 :    
142 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
143 :     (much faster using dsyrk, a level 3 BLAS routine).
144 :    
145 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
146 :    
147 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
148 :    
149 :     * tests/ssclme.R: Modify the test to account for the permutation
150 :     of the levels of the grouping factors.
151 :    
152 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
153 :    
154 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
155 :     directly into the ssclme class definition.
156 :    
157 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
158 :    
159 :     * DESCRIPTION (Date): New release
160 :    
161 :     * man/ssclme-class.Rd: new file.
162 :    
163 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
164 :     works and it's fast!
165 :    
166 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
167 :    
168 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
169 :    
170 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
171 :    
172 :     * DESCRIPTION (Date): New release
173 :    
174 :     * NAMESPACE: Don't export ssclme.
175 :    
176 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
177 :     school data.
178 :    
179 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
180 :    
181 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
182 :     keep track of the fixed-effects and the response. Counts also
183 :     gets an extra element, which is always one.
184 :    
185 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
186 :    
187 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
188 :    
189 :     * src/cscMatrix.c (csc_transpose): new function
190 :    
191 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
192 :     (csc_components_transpose): new function
193 :    
194 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
195 :    
196 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
197 :     triplets
198 :    
199 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
200 :    
201 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
202 :    
203 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
204 :     and all other .h files in src.
205 :    
206 :     * src/Makefile.win: This and other Makefile.win files contributed
207 :     by Brian Ripley.
208 :    
209 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
210 :    
211 :     * R/syMatrix.R: Added methods for "%*%".
212 :    
213 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
214 :     poMatrix object.
215 :    
216 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
217 :    
218 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
219 :    
220 :     2004-01-25 Douglas Bates <bates@bates2_home>
221 :    
222 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
223 :    
224 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
225 :     of nrow.
226 :    
227 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
228 :    
229 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
230 :     subdirectories.
231 :    
232 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
233 :    
234 :     * src/taucs.h: Accidently referred to global header files
235 :     instead of local files.
236 :    
237 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
238 :    
239 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
240 :     and methods and replaced all classes with S4 classes.
241 :    
242 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
243 :    
244 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
245 :    
246 :     * src/R_LapackPP.cc: Change method of calculating determinants
247 :    
248 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
249 :    
250 :     * DESCRIPTION (Version): removed empty data directory as requested
251 :     by CRAN maintainers. Changed version number and date.
252 :    
253 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
254 :    
255 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
256 :     under Windows.
257 :    
258 :     * Added configure.win and src/Makevars.win as requested by Brian
259 :     Ripley.
260 :    
261 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
262 :    
263 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
264 :     Hornik.
265 :    
266 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
267 :    
268 :     * configure.ac: Replaced configure.in with configure.ac
269 :     contributed by Kurt Hornik.
270 :    
271 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
272 :     version for R-1.5.0
273 :    
274 :    
275 :     2001-12-10 Douglas Bates <bates@stat.wisc.edu>
276 :    
277 :     * man/eigen.Rd: Removed the .Alias in the example

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