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Annotation of /pkg/ChangeLog

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1 : bates 375 2004-12-03 Douglas Bates <bates@bates1-home>
2 :    
3 :     * src/lmeRep.c (lmeRep_factor): order of operations for multiple
4 :     scalar grouping factors corrected.
5 :    
6 :     2004-11-29 Douglas Bates <bates@bates1-home>
7 :    
8 :     * src/bCrosstab.c: remove diag_update which is no longer used
9 :    
10 : bates 350 2004-11-16 Douglas Bates <bates@bates1-home>
11 :    
12 :     * src/Metis_utils.c: Move metis.h include to C sources so that the
13 :     .h file can be included.
14 :    
15 : bates 342 2004-11-12 Douglas Bates <bates@bates1-home>
16 :    
17 : bates 350 * src/LU.c,geMatrix.c,trMatrix.c, etc.:
18 : bates 342 Complete allocation of slots in NEW_OBJECT.
19 :    
20 :     * src/Mutils.h: Moved list of symbols to an include file
21 :    
22 :     2004-11-11 Douglas Bates <bates@bates1-home>
23 :    
24 :     * src/geMutils.c (Matrix_init): remove unused function
25 :    
26 :     2004-11-10 Douglas Bates <bates@bates1-home>
27 :    
28 :     * src/cscMatrix.c (csc_to_imagemat): removed unused function
29 :    
30 : bates 327 2004-11-05 Douglas Bates <bates@bates1-home>
31 :    
32 :     * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
33 :    
34 : bates 303 2004-10-27 Douglas Bates <bates@bates1-home>
35 :    
36 :     * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
37 :    
38 : bates 296 2004-10-04 Douglas Bates <bates@bates1-home>
39 :    
40 :     * src/init.c: Created R_init_Matrix and added registration of C
41 :     routines.
42 :    
43 : bates 283 2004-10-02 Douglas Bates <bates@bates1-home>
44 :    
45 :     * R/tripletMatrix.R: Force a require(lattice) for the image methods.
46 :    
47 : bates 229 2004-06-15 Douglas Bates <bates@bates7>
48 :    
49 :     * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
50 :    
51 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
52 :    
53 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
54 :    
55 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
56 :    
57 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
58 :     ssclme_update_mm
59 :    
60 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
61 :    
62 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
63 :     in the order of unconstrained and constrained parameters.
64 :     (ssclme_gradient): Added the gradients (not yet correct for
65 :     multidimensional, unconstrained case).
66 :    
67 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
68 :    
69 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
70 :    
71 :     * src/Makefile.win: Remove unneeded ranlib call
72 :    
73 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
74 :    
75 :     * DESCRIPTION (Version): New release
76 :    
77 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
78 :    
79 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
80 :    
81 :     * src/triplet_to_col.c: Create triplet_to_col as a native
82 :     function, not the version from umfpack. There were problems with
83 :     the configuration of UMFPACK for 64-bit processors and there was
84 :     only one umfpack routine being used so I moved it here.
85 :    
86 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
87 :    
88 :     * src/ssclme.c (ssclme_variances): New function.
89 :    
90 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
91 :    
92 :     * src/ssclme.c (ssclme_fitted): Added function.
93 :    
94 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
95 :    
96 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
97 :     store the dimnames in the XtX and bVar slots
98 :     (ssclme_update_mm): Change the dimensions of the bVar slot
99 :     components and the returned value from ssclme_ranef.
100 :    
101 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
102 :    
103 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
104 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
105 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
106 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
107 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
108 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
109 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
110 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
111 :     Moved the pdMat classes from the lme4 package.
112 :    
113 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
114 :    
115 :     * man/ssclme-class.Rd: Update definition and documentation of the
116 :     ssclme class to include the DIsqrt slot.
117 :    
118 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
119 :     (much faster using dsyrk, a level 3 BLAS routine).
120 :    
121 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
122 :    
123 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
124 :    
125 :     * tests/ssclme.R: Modify the test to account for the permutation
126 :     of the levels of the grouping factors.
127 :    
128 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
129 :    
130 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
131 :     directly into the ssclme class definition.
132 :    
133 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
134 :    
135 :     * DESCRIPTION (Date): New release
136 :    
137 :     * man/ssclme-class.Rd: new file.
138 :    
139 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
140 :     works and it's fast!
141 :    
142 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
143 :    
144 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
145 :    
146 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
147 :    
148 :     * DESCRIPTION (Date): New release
149 :    
150 :     * NAMESPACE: Don't export ssclme.
151 :    
152 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
153 :     school data.
154 :    
155 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
156 :    
157 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
158 :     keep track of the fixed-effects and the response. Counts also
159 :     gets an extra element, which is always one.
160 :    
161 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
162 :    
163 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
164 :    
165 :     * src/cscMatrix.c (csc_transpose): new function
166 :    
167 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
168 :     (csc_components_transpose): new function
169 :    
170 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
171 :    
172 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
173 :     triplets
174 :    
175 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
176 :    
177 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
178 :    
179 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
180 :     and all other .h files in src.
181 :    
182 :     * src/Makefile.win: This and other Makefile.win files contributed
183 :     by Brian Ripley.
184 :    
185 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
186 :    
187 :     * R/syMatrix.R: Added methods for "%*%".
188 :    
189 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
190 :     poMatrix object.
191 :    
192 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
193 :    
194 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
195 :    
196 :     2004-01-25 Douglas Bates <bates@bates2_home>
197 :    
198 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
199 :    
200 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
201 :     of nrow.
202 :    
203 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
204 :    
205 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
206 :     subdirectories.
207 :    
208 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
209 :    
210 :     * src/taucs.h: Accidently referred to global header files
211 :     instead of local files.
212 :    
213 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
214 :    
215 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
216 :     and methods and replaced all classes with S4 classes.
217 :    
218 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
219 :    
220 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
221 :    
222 :     * src/R_LapackPP.cc: Change method of calculating determinants
223 :    
224 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
225 :    
226 :     * DESCRIPTION (Version): removed empty data directory as requested
227 :     by CRAN maintainers. Changed version number and date.
228 :    
229 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
230 :    
231 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
232 :     under Windows.
233 :    
234 :     * Added configure.win and src/Makevars.win as requested by Brian
235 :     Ripley.
236 :    
237 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
238 :    
239 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
240 :     Hornik.
241 :    
242 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
243 :    
244 :     * configure.ac: Replaced configure.in with configure.ac
245 :     contributed by Kurt Hornik.
246 :    
247 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
248 :     version for R-1.5.0
249 :    
250 :    
251 :     2001-12-10 Douglas Bates <bates@stat.wisc.edu>
252 :    
253 :     * man/eigen.Rd: Removed the .Alias in the example

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