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[matrix] Annotation of /pkg/ChangeLog
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Annotation of /pkg/ChangeLog

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1 : bates 342 2004-11-12 Douglas Bates <bates@bates1-home>
2 :    
3 :     * src/LU.c,geMatrix.c,trMatrix.c:
4 :     Complete allocation of slots in NEW_OBJECT.
5 :    
6 :     * src/Mutils.h: Moved list of symbols to an include file
7 :    
8 :     2004-11-11 Douglas Bates <bates@bates1-home>
9 :    
10 :     * src/geMutils.c (Matrix_init): remove unused function
11 :    
12 :     2004-11-10 Douglas Bates <bates@bates1-home>
13 :    
14 :     * src/cscMatrix.c (csc_to_imagemat): removed unused function
15 :    
16 : bates 327 2004-11-05 Douglas Bates <bates@bates1-home>
17 :    
18 :     * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
19 :    
20 : bates 303 2004-10-27 Douglas Bates <bates@bates1-home>
21 :    
22 :     * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
23 :    
24 : bates 296 2004-10-04 Douglas Bates <bates@bates1-home>
25 :    
26 :     * src/init.c: Created R_init_Matrix and added registration of C
27 :     routines.
28 :    
29 : bates 283 2004-10-02 Douglas Bates <bates@bates1-home>
30 :    
31 :     * R/tripletMatrix.R: Force a require(lattice) for the image methods.
32 :    
33 : bates 229 2004-06-15 Douglas Bates <bates@bates7>
34 :    
35 :     * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
36 :    
37 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
38 :    
39 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
40 :    
41 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
42 :    
43 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
44 :     ssclme_update_mm
45 :    
46 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
47 :    
48 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
49 :     in the order of unconstrained and constrained parameters.
50 :     (ssclme_gradient): Added the gradients (not yet correct for
51 :     multidimensional, unconstrained case).
52 :    
53 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
54 :    
55 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
56 :    
57 :     * src/Makefile.win: Remove unneeded ranlib call
58 :    
59 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
60 :    
61 :     * DESCRIPTION (Version): New release
62 :    
63 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
64 :    
65 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
66 :    
67 :     * src/triplet_to_col.c: Create triplet_to_col as a native
68 :     function, not the version from umfpack. There were problems with
69 :     the configuration of UMFPACK for 64-bit processors and there was
70 :     only one umfpack routine being used so I moved it here.
71 :    
72 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
73 :    
74 :     * src/ssclme.c (ssclme_variances): New function.
75 :    
76 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
77 :    
78 :     * src/ssclme.c (ssclme_fitted): Added function.
79 :    
80 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
81 :    
82 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
83 :     store the dimnames in the XtX and bVar slots
84 :     (ssclme_update_mm): Change the dimensions of the bVar slot
85 :     components and the returned value from ssclme_ranef.
86 :    
87 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
88 :    
89 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
90 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
91 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
92 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
93 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
94 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
95 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
96 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
97 :     Moved the pdMat classes from the lme4 package.
98 :    
99 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
100 :    
101 :     * man/ssclme-class.Rd: Update definition and documentation of the
102 :     ssclme class to include the DIsqrt slot.
103 :    
104 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
105 :     (much faster using dsyrk, a level 3 BLAS routine).
106 :    
107 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
108 :    
109 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
110 :    
111 :     * tests/ssclme.R: Modify the test to account for the permutation
112 :     of the levels of the grouping factors.
113 :    
114 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
115 :    
116 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
117 :     directly into the ssclme class definition.
118 :    
119 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
120 :    
121 :     * DESCRIPTION (Date): New release
122 :    
123 :     * man/ssclme-class.Rd: new file.
124 :    
125 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
126 :     works and it's fast!
127 :    
128 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
129 :    
130 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
131 :    
132 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
133 :    
134 :     * DESCRIPTION (Date): New release
135 :    
136 :     * NAMESPACE: Don't export ssclme.
137 :    
138 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
139 :     school data.
140 :    
141 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
142 :    
143 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
144 :     keep track of the fixed-effects and the response. Counts also
145 :     gets an extra element, which is always one.
146 :    
147 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
148 :    
149 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
150 :    
151 :     * src/cscMatrix.c (csc_transpose): new function
152 :    
153 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
154 :     (csc_components_transpose): new function
155 :    
156 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
157 :    
158 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
159 :     triplets
160 :    
161 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
162 :    
163 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
164 :    
165 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
166 :     and all other .h files in src.
167 :    
168 :     * src/Makefile.win: This and other Makefile.win files contributed
169 :     by Brian Ripley.
170 :    
171 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
172 :    
173 :     * R/syMatrix.R: Added methods for "%*%".
174 :    
175 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
176 :     poMatrix object.
177 :    
178 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
179 :    
180 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
181 :    
182 :     2004-01-25 Douglas Bates <bates@bates2_home>
183 :    
184 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
185 :    
186 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
187 :     of nrow.
188 :    
189 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
190 :    
191 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
192 :     subdirectories.
193 :    
194 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
195 :    
196 :     * src/taucs.h: Accidently referred to global header files
197 :     instead of local files.
198 :    
199 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
200 :    
201 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
202 :     and methods and replaced all classes with S4 classes.
203 :    
204 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
205 :    
206 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
207 :    
208 :     * src/R_LapackPP.cc: Change method of calculating determinants
209 :    
210 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
211 :    
212 :     * DESCRIPTION (Version): removed empty data directory as requested
213 :     by CRAN maintainers. Changed version number and date.
214 :    
215 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
216 :    
217 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
218 :     under Windows.
219 :    
220 :     * Added configure.win and src/Makevars.win as requested by Brian
221 :     Ripley.
222 :    
223 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
224 :    
225 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
226 :     Hornik.
227 :    
228 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
229 :    
230 :     * configure.ac: Replaced configure.in with configure.ac
231 :     contributed by Kurt Hornik.
232 :    
233 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
234 :     version for R-1.5.0
235 :    
236 :    
237 :     2001-12-10 Douglas Bates <bates@stat.wisc.edu>
238 :    
239 :     * man/eigen.Rd: Removed the .Alias in the example

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