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[matrix] Annotation of /pkg/ChangeLog
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Annotation of /pkg/ChangeLog

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Revision 327 - (view) (download)

1 : bates 327 2004-11-05 Douglas Bates <bates@bates1-home>
2 :    
3 :     * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
4 :    
5 : bates 303 2004-10-27 Douglas Bates <bates@bates1-home>
6 :    
7 :     * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
8 :    
9 : bates 296 2004-10-04 Douglas Bates <bates@bates1-home>
10 :    
11 :     * src/init.c: Created R_init_Matrix and added registration of C
12 :     routines.
13 :    
14 : bates 283 2004-10-02 Douglas Bates <bates@bates1-home>
15 :    
16 :     * R/tripletMatrix.R: Force a require(lattice) for the image methods.
17 :    
18 : bates 229 2004-06-15 Douglas Bates <bates@bates7>
19 :    
20 :     * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
21 :    
22 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
23 :    
24 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
25 :    
26 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
27 :    
28 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
29 :     ssclme_update_mm
30 :    
31 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
32 :    
33 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
34 :     in the order of unconstrained and constrained parameters.
35 :     (ssclme_gradient): Added the gradients (not yet correct for
36 :     multidimensional, unconstrained case).
37 :    
38 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
39 :    
40 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
41 :    
42 :     * src/Makefile.win: Remove unneeded ranlib call
43 :    
44 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
45 :    
46 :     * DESCRIPTION (Version): New release
47 :    
48 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
49 :    
50 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
51 :    
52 :     * src/triplet_to_col.c: Create triplet_to_col as a native
53 :     function, not the version from umfpack. There were problems with
54 :     the configuration of UMFPACK for 64-bit processors and there was
55 :     only one umfpack routine being used so I moved it here.
56 :    
57 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
58 :    
59 :     * src/ssclme.c (ssclme_variances): New function.
60 :    
61 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
62 :    
63 :     * src/ssclme.c (ssclme_fitted): Added function.
64 :    
65 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
66 :    
67 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
68 :     store the dimnames in the XtX and bVar slots
69 :     (ssclme_update_mm): Change the dimensions of the bVar slot
70 :     components and the returned value from ssclme_ranef.
71 :    
72 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
73 :    
74 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
75 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
76 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
77 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
78 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
79 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
80 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
81 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
82 :     Moved the pdMat classes from the lme4 package.
83 :    
84 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
85 :    
86 :     * man/ssclme-class.Rd: Update definition and documentation of the
87 :     ssclme class to include the DIsqrt slot.
88 :    
89 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
90 :     (much faster using dsyrk, a level 3 BLAS routine).
91 :    
92 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
93 :    
94 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
95 :    
96 :     * tests/ssclme.R: Modify the test to account for the permutation
97 :     of the levels of the grouping factors.
98 :    
99 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
100 :    
101 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
102 :     directly into the ssclme class definition.
103 :    
104 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
105 :    
106 :     * DESCRIPTION (Date): New release
107 :    
108 :     * man/ssclme-class.Rd: new file.
109 :    
110 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
111 :     works and it's fast!
112 :    
113 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
114 :    
115 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
116 :    
117 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
118 :    
119 :     * DESCRIPTION (Date): New release
120 :    
121 :     * NAMESPACE: Don't export ssclme.
122 :    
123 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
124 :     school data.
125 :    
126 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
127 :    
128 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
129 :     keep track of the fixed-effects and the response. Counts also
130 :     gets an extra element, which is always one.
131 :    
132 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
133 :    
134 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
135 :    
136 :     * src/cscMatrix.c (csc_transpose): new function
137 :    
138 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
139 :     (csc_components_transpose): new function
140 :    
141 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
142 :    
143 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
144 :     triplets
145 :    
146 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
147 :    
148 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
149 :    
150 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
151 :     and all other .h files in src.
152 :    
153 :     * src/Makefile.win: This and other Makefile.win files contributed
154 :     by Brian Ripley.
155 :    
156 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
157 :    
158 :     * R/syMatrix.R: Added methods for "%*%".
159 :    
160 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
161 :     poMatrix object.
162 :    
163 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
164 :    
165 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
166 :    
167 :     2004-01-25 Douglas Bates <bates@bates2_home>
168 :    
169 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
170 :    
171 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
172 :     of nrow.
173 :    
174 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
175 :    
176 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
177 :     subdirectories.
178 :    
179 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
180 :    
181 :     * src/taucs.h: Accidently referred to global header files
182 :     instead of local files.
183 :    
184 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
185 :    
186 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
187 :     and methods and replaced all classes with S4 classes.
188 :    
189 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
190 :    
191 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
192 :    
193 :     * src/R_LapackPP.cc: Change method of calculating determinants
194 :    
195 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
196 :    
197 :     * DESCRIPTION (Version): removed empty data directory as requested
198 :     by CRAN maintainers. Changed version number and date.
199 :    
200 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
201 :    
202 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
203 :     under Windows.
204 :    
205 :     * Added configure.win and src/Makevars.win as requested by Brian
206 :     Ripley.
207 :    
208 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
209 :    
210 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
211 :     Hornik.
212 :    
213 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
214 :    
215 :     * configure.ac: Replaced configure.in with configure.ac
216 :     contributed by Kurt Hornik.
217 :    
218 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
219 :     version for R-1.5.0
220 :    
221 :    
222 :     2001-12-10 Douglas Bates <bates@stat.wisc.edu>
223 :    
224 :     * man/eigen.Rd: Removed the .Alias in the example

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