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[matrix] Annotation of /pkg/ChangeLog
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Annotation of /pkg/ChangeLog

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1 : bates 296 2004-10-04 Douglas Bates <bates@bates1-home>
2 :    
3 :     * src/init.c: Created R_init_Matrix and added registration of C
4 :     routines.
5 :    
6 : bates 283 2004-10-02 Douglas Bates <bates@bates1-home>
7 :    
8 :     * R/tripletMatrix.R: Force a require(lattice) for the image methods.
9 :    
10 : bates 229 2004-06-15 Douglas Bates <bates@bates7>
11 :    
12 :     * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
13 :    
14 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
15 :    
16 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
17 :    
18 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
19 :    
20 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
21 :     ssclme_update_mm
22 :    
23 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
24 :    
25 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
26 :     in the order of unconstrained and constrained parameters.
27 :     (ssclme_gradient): Added the gradients (not yet correct for
28 :     multidimensional, unconstrained case).
29 :    
30 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
31 :    
32 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
33 :    
34 :     * src/Makefile.win: Remove unneeded ranlib call
35 :    
36 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
37 :    
38 :     * DESCRIPTION (Version): New release
39 :    
40 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
41 :    
42 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
43 :    
44 :     * src/triplet_to_col.c: Create triplet_to_col as a native
45 :     function, not the version from umfpack. There were problems with
46 :     the configuration of UMFPACK for 64-bit processors and there was
47 :     only one umfpack routine being used so I moved it here.
48 :    
49 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
50 :    
51 :     * src/ssclme.c (ssclme_variances): New function.
52 :    
53 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
54 :    
55 :     * src/ssclme.c (ssclme_fitted): Added function.
56 :    
57 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
58 :    
59 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
60 :     store the dimnames in the XtX and bVar slots
61 :     (ssclme_update_mm): Change the dimensions of the bVar slot
62 :     components and the returned value from ssclme_ranef.
63 :    
64 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
65 :    
66 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
67 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
68 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
69 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
70 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
71 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
72 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
73 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
74 :     Moved the pdMat classes from the lme4 package.
75 :    
76 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
77 :    
78 :     * man/ssclme-class.Rd: Update definition and documentation of the
79 :     ssclme class to include the DIsqrt slot.
80 :    
81 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
82 :     (much faster using dsyrk, a level 3 BLAS routine).
83 :    
84 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
85 :    
86 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
87 :    
88 :     * tests/ssclme.R: Modify the test to account for the permutation
89 :     of the levels of the grouping factors.
90 :    
91 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
92 :    
93 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
94 :     directly into the ssclme class definition.
95 :    
96 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
97 :    
98 :     * DESCRIPTION (Date): New release
99 :    
100 :     * man/ssclme-class.Rd: new file.
101 :    
102 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
103 :     works and it's fast!
104 :    
105 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
106 :    
107 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
108 :    
109 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
110 :    
111 :     * DESCRIPTION (Date): New release
112 :    
113 :     * NAMESPACE: Don't export ssclme.
114 :    
115 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
116 :     school data.
117 :    
118 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
119 :    
120 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
121 :     keep track of the fixed-effects and the response. Counts also
122 :     gets an extra element, which is always one.
123 :    
124 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
125 :    
126 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
127 :    
128 :     * src/cscMatrix.c (csc_transpose): new function
129 :    
130 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
131 :     (csc_components_transpose): new function
132 :    
133 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
134 :    
135 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
136 :     triplets
137 :    
138 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
139 :    
140 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
141 :    
142 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
143 :     and all other .h files in src.
144 :    
145 :     * src/Makefile.win: This and other Makefile.win files contributed
146 :     by Brian Ripley.
147 :    
148 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
149 :    
150 :     * R/syMatrix.R: Added methods for "%*%".
151 :    
152 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
153 :     poMatrix object.
154 :    
155 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
156 :    
157 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
158 :    
159 :     2004-01-25 Douglas Bates <bates@bates2_home>
160 :    
161 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
162 :    
163 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
164 :     of nrow.
165 :    
166 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
167 :    
168 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
169 :     subdirectories.
170 :    
171 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
172 :    
173 :     * src/taucs.h: Accidently referred to global header files
174 :     instead of local files.
175 :    
176 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
177 :    
178 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
179 :     and methods and replaced all classes with S4 classes.
180 :    
181 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
182 :    
183 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
184 :    
185 :     * src/R_LapackPP.cc: Change method of calculating determinants
186 :    
187 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
188 :    
189 :     * DESCRIPTION (Version): removed empty data directory as requested
190 :     by CRAN maintainers. Changed version number and date.
191 :    
192 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
193 :    
194 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
195 :     under Windows.
196 :    
197 :     * Added configure.win and src/Makevars.win as requested by Brian
198 :     Ripley.
199 :    
200 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
201 :    
202 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
203 :     Hornik.
204 :    
205 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
206 :    
207 :     * configure.ac: Replaced configure.in with configure.ac
208 :     contributed by Kurt Hornik.
209 :    
210 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
211 :     version for R-1.5.0
212 :    
213 :    
214 :     2001-12-10 Douglas Bates <bates@stat.wisc.edu>
215 :    
216 :     * man/eigen.Rd: Removed the .Alias in the example

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