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[matrix] Annotation of /pkg/ChangeLog
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Annotation of /pkg/ChangeLog

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1 : bates 283 2004-10-02 Douglas Bates <bates@bates1-home>
2 :    
3 :     * R/tripletMatrix.R: Force a require(lattice) for the image methods.
4 :    
5 : bates 229 2004-06-15 Douglas Bates <bates@bates7>
6 :    
7 :     * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
8 :    
9 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
10 :    
11 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
12 :    
13 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
14 :    
15 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
16 :     ssclme_update_mm
17 :    
18 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
19 :    
20 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
21 :     in the order of unconstrained and constrained parameters.
22 :     (ssclme_gradient): Added the gradients (not yet correct for
23 :     multidimensional, unconstrained case).
24 :    
25 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
26 :    
27 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
28 :    
29 :     * src/Makefile.win: Remove unneeded ranlib call
30 :    
31 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
32 :    
33 :     * DESCRIPTION (Version): New release
34 :    
35 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
36 :    
37 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
38 :    
39 :     * src/triplet_to_col.c: Create triplet_to_col as a native
40 :     function, not the version from umfpack. There were problems with
41 :     the configuration of UMFPACK for 64-bit processors and there was
42 :     only one umfpack routine being used so I moved it here.
43 :    
44 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
45 :    
46 :     * src/ssclme.c (ssclme_variances): New function.
47 :    
48 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
49 :    
50 :     * src/ssclme.c (ssclme_fitted): Added function.
51 :    
52 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
53 :    
54 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
55 :     store the dimnames in the XtX and bVar slots
56 :     (ssclme_update_mm): Change the dimensions of the bVar slot
57 :     components and the returned value from ssclme_ranef.
58 :    
59 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
60 :    
61 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
62 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
63 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
64 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
65 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
66 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
67 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
68 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
69 :     Moved the pdMat classes from the lme4 package.
70 :    
71 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
72 :    
73 :     * man/ssclme-class.Rd: Update definition and documentation of the
74 :     ssclme class to include the DIsqrt slot.
75 :    
76 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
77 :     (much faster using dsyrk, a level 3 BLAS routine).
78 :    
79 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
80 :    
81 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
82 :    
83 :     * tests/ssclme.R: Modify the test to account for the permutation
84 :     of the levels of the grouping factors.
85 :    
86 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
87 :    
88 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
89 :     directly into the ssclme class definition.
90 :    
91 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
92 :    
93 :     * DESCRIPTION (Date): New release
94 :    
95 :     * man/ssclme-class.Rd: new file.
96 :    
97 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
98 :     works and it's fast!
99 :    
100 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
101 :    
102 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
103 :    
104 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
105 :    
106 :     * DESCRIPTION (Date): New release
107 :    
108 :     * NAMESPACE: Don't export ssclme.
109 :    
110 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
111 :     school data.
112 :    
113 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
114 :    
115 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
116 :     keep track of the fixed-effects and the response. Counts also
117 :     gets an extra element, which is always one.
118 :    
119 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
120 :    
121 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
122 :    
123 :     * src/cscMatrix.c (csc_transpose): new function
124 :    
125 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
126 :     (csc_components_transpose): new function
127 :    
128 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
129 :    
130 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
131 :     triplets
132 :    
133 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
134 :    
135 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
136 :    
137 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
138 :     and all other .h files in src.
139 :    
140 :     * src/Makefile.win: This and other Makefile.win files contributed
141 :     by Brian Ripley.
142 :    
143 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
144 :    
145 :     * R/syMatrix.R: Added methods for "%*%".
146 :    
147 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
148 :     poMatrix object.
149 :    
150 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
151 :    
152 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
153 :    
154 :     2004-01-25 Douglas Bates <bates@bates2_home>
155 :    
156 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
157 :    
158 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
159 :     of nrow.
160 :    
161 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
162 :    
163 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
164 :     subdirectories.
165 :    
166 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
167 :    
168 :     * src/taucs.h: Accidently referred to global header files
169 :     instead of local files.
170 :    
171 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
172 :    
173 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
174 :     and methods and replaced all classes with S4 classes.
175 :    
176 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
177 :    
178 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
179 :    
180 :     * src/R_LapackPP.cc: Change method of calculating determinants
181 :    
182 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
183 :    
184 :     * DESCRIPTION (Version): removed empty data directory as requested
185 :     by CRAN maintainers. Changed version number and date.
186 :    
187 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
188 :    
189 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
190 :     under Windows.
191 :    
192 :     * Added configure.win and src/Makevars.win as requested by Brian
193 :     Ripley.
194 :    
195 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
196 :    
197 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
198 :     Hornik.
199 :    
200 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
201 :    
202 :     * configure.ac: Replaced configure.in with configure.ac
203 :     contributed by Kurt Hornik.
204 :    
205 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
206 :     version for R-1.5.0
207 :    
208 :    
209 :     2001-12-10 Douglas Bates <bates@stat.wisc.edu>
210 :    
211 :     * man/eigen.Rd: Removed the .Alias in the example

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