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[matrix] Annotation of /pkg/ChangeLog
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Annotation of /pkg/ChangeLog

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1 : bates 229 2004-06-15 Douglas Bates <bates@bates7>
2 :    
3 :     * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
4 :    
5 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
6 :    
7 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
8 :    
9 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
10 :    
11 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
12 :     ssclme_update_mm
13 :    
14 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
15 :    
16 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
17 :     in the order of unconstrained and constrained parameters.
18 :     (ssclme_gradient): Added the gradients (not yet correct for
19 :     multidimensional, unconstrained case).
20 :    
21 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
22 :    
23 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
24 :    
25 :     * src/Makefile.win: Remove unneeded ranlib call
26 :    
27 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
28 :    
29 :     * DESCRIPTION (Version): New release
30 :    
31 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
32 :    
33 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
34 :    
35 :     * src/triplet_to_col.c: Create triplet_to_col as a native
36 :     function, not the version from umfpack. There were problems with
37 :     the configuration of UMFPACK for 64-bit processors and there was
38 :     only one umfpack routine being used so I moved it here.
39 :    
40 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
41 :    
42 :     * src/ssclme.c (ssclme_variances): New function.
43 :    
44 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
45 :    
46 :     * src/ssclme.c (ssclme_fitted): Added function.
47 :    
48 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
49 :    
50 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
51 :     store the dimnames in the XtX and bVar slots
52 :     (ssclme_update_mm): Change the dimensions of the bVar slot
53 :     components and the returned value from ssclme_ranef.
54 :    
55 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
56 :    
57 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
58 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
59 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
60 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
61 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
62 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
63 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
64 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
65 :     Moved the pdMat classes from the lme4 package.
66 :    
67 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
68 :    
69 :     * man/ssclme-class.Rd: Update definition and documentation of the
70 :     ssclme class to include the DIsqrt slot.
71 :    
72 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
73 :     (much faster using dsyrk, a level 3 BLAS routine).
74 :    
75 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
76 :    
77 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
78 :    
79 :     * tests/ssclme.R: Modify the test to account for the permutation
80 :     of the levels of the grouping factors.
81 :    
82 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
83 :    
84 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
85 :     directly into the ssclme class definition.
86 :    
87 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
88 :    
89 :     * DESCRIPTION (Date): New release
90 :    
91 :     * man/ssclme-class.Rd: new file.
92 :    
93 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
94 :     works and it's fast!
95 :    
96 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
97 :    
98 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
99 :    
100 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
101 :    
102 :     * DESCRIPTION (Date): New release
103 :    
104 :     * NAMESPACE: Don't export ssclme.
105 :    
106 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
107 :     school data.
108 :    
109 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
110 :    
111 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
112 :     keep track of the fixed-effects and the response. Counts also
113 :     gets an extra element, which is always one.
114 :    
115 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
116 :    
117 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
118 :    
119 :     * src/cscMatrix.c (csc_transpose): new function
120 :    
121 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
122 :     (csc_components_transpose): new function
123 :    
124 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
125 :    
126 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
127 :     triplets
128 :    
129 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
130 :    
131 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
132 :    
133 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
134 :     and all other .h files in src.
135 :    
136 :     * src/Makefile.win: This and other Makefile.win files contributed
137 :     by Brian Ripley.
138 :    
139 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
140 :    
141 :     * R/syMatrix.R: Added methods for "%*%".
142 :    
143 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
144 :     poMatrix object.
145 :    
146 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
147 :    
148 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
149 :    
150 :     2004-01-25 Douglas Bates <bates@bates2_home>
151 :    
152 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
153 :    
154 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
155 :     of nrow.
156 :    
157 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
158 :    
159 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
160 :     subdirectories.
161 :    
162 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
163 :    
164 :     * src/taucs.h: Accidently referred to global header files
165 :     instead of local files.
166 :    
167 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
168 :    
169 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
170 :     and methods and replaced all classes with S4 classes.
171 :    
172 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
173 :    
174 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
175 :    
176 :     * src/R_LapackPP.cc: Change method of calculating determinants
177 :    
178 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
179 :    
180 :     * DESCRIPTION (Version): removed empty data directory as requested
181 :     by CRAN maintainers. Changed version number and date.
182 :    
183 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
184 :    
185 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
186 :     under Windows.
187 :    
188 :     * Added configure.win and src/Makevars.win as requested by Brian
189 :     Ripley.
190 :    
191 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
192 :    
193 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
194 :     Hornik.
195 :    
196 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
197 :    
198 :     * configure.ac: Replaced configure.in with configure.ac
199 :     contributed by Kurt Hornik.
200 :    
201 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
202 :     version for R-1.5.0
203 :    
204 :    
205 :     2001-12-10 Douglas Bates <bates@stat.wisc.edu>
206 :    
207 :     * man/eigen.Rd: Removed the .Alias in the example

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