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1 : bates 1316 2006-07-11 Douglas Bates <Douglas.Bates@R-project.org>
2 :    
3 :     * src/dsTMatrix.c (dsTMatrix_as_dgTMatrix): Fix a case of INTEGER
4 :     being applied to the x slot (detected by Brian Ripley). Possible
5 :     problem with copying the diagonal elements twice?
6 :    
7 : maechler 1315 2006-07-10 Martin Maechler <maechler@stat.math.ethz.ch>
8 :    
9 :     * src/dgCMatrix.c (dgCMatrix_validate): 'p' slot must have correct length.
10 :    
11 :     * R/Auxiliaries.R (isTriC): fix buglet (we were 1-based!)
12 :    
13 :     2006-07-08 Martin Maechler <maechler@stat.math.ethz.ch>
14 :    
15 :     * src/lgCMatrix.c (lgCMatrix_diag): new function
16 :     * R/lgCMatrix.R (diag): for new method
17 :    
18 :     * R/AllClass.R (TsparseMatrix): do use Tsparse_validate
19 :     ==> construction of illegal "*gTMatrix" via new() should
20 :     now be much less easy:
21 :     * tests/Class+Meth.R: assertError() for some illegal "dgT*"
22 :    
23 :     * R/Matrix.R (Matrix): Matrix(0, nrow,ncol) now "goes sparse"
24 :     directly.
25 :     * man/Matrix.Rd: documents it.
26 :    
27 : bates 1311 2006-07-06 Douglas Bates <bates@R-project.org>
28 :    
29 :     * src/pedigree.c (pedigree_inbreeding): Correction in
30 :     initialization. This function is not currently being used and is
31 :     not fully tested.
32 :    
33 : bates 1312 * NAMESPACE, R/{AllClass.R,lmer.R}, src/{init.c,lmer.c}:
34 :     Introduced the glmer class. Added code for mcmcmsamp on glmer
35 :     objects. Modified validity check on pedigree objects to account
36 :     for nonparallel patterns of missingness of parents.
37 : bates 1311
38 : bates 1313 * man/{lmer-class.Rd,mcmcsamp.Rd}: Update documentation for glmer
39 :     class.
40 : maechler 1315
41 :     2006-07-01 Martin Maechler <maechler@stat.math.ethz.ch>
42 :    
43 :     * R/pMatrix.R: coercion pMatrix -> Tsparse
44 :    
45 : bates 1300 2006-06-12 Douglas Bates <bates@R-project.org>
46 :    
47 :     * R/lmer.R (mcmcsamp method): Corrected arrangments of names on
48 :     the output from mcmcsamp.
49 :    
50 : bates 1298 2006-06-10 Douglas Bates <bates@R-project.org>
51 :    
52 : bates 1300 * R/lmer.R (simulestimate): added C code for calculating the trace
53 :     of the hat matrix.
54 : bates 1298
55 : maechler 1295 2006-06-09 Martin Maechler <maechler@stat.math.ethz.ch>
56 :    
57 :     * R/diagMatrix.R (setAs): define coercion methods to sparse matrix
58 :     classes.
59 : maechler 1315 * R/sparseMatrix.R etc: multiplication of diagonal and sparse
60 : maechler 1295
61 : maechler 1290 2006-06-08 Martin Maechler <maechler@stat.math.ethz.ch>
62 :    
63 :     * R/dgTMatrix.R (colSums): etc. All four of
64 :     colSums(), rowSums(), colMeans(), rowMeans() now should work for
65 :     all "Matrices".
66 :    
67 : bates 1288 2006-06-01 Douglas Bates <bates@stat.wisc.edu>
68 :    
69 :     * R/lmer.R (panel.ci): Add a reference line at zero and a
70 :     background grid to the qqmath plot of ranef.lmer.
71 :    
72 : bates 1287 2006-05-30 Douglas Bates <bates@stat.wisc.edu>
73 : bates 1284
74 : bates 1287 * R/lmer.R (expandSlash): Functions (non-exported) to allow nested
75 :     grouping factors to be specified in the formula as (1|foo/bar).
76 :    
77 :     2006-05-27 Douglas Bates <bates@stat.wisc.edu>
78 :    
79 : bates 1284 * R/lmer.R (findbars and others): Change check of is.numeric to
80 :     !is.language to resolve the bug reported by Jacob Wegelin.
81 :    
82 :     * src/pedigree.c (pedigree_inbreeding): Initial implementation of
83 :     code to evaluate inbreeding coefficients without calculating T,
84 :     based on code in Sargolzaei and Iwaisaki's paper.
85 :    
86 : bates 1283 2006-05-27 Douglas Bates <bates@stat.wisc.edu>
87 :    
88 :     * R/{lmer.R,AllGeneric.R}, src/{init.c,lmer.[ch]}: Added local
89 :     generic and mer methods for isNested and denomDF. This denomDF was
90 :     an attempt to emulate that in lme but I don't think that makes
91 :     sense. Use the trace of the hat matrix instead.
92 :    
93 : maechler 1271 2006-05-17 Martin Maechler <maechler@stat.math.ethz.ch>
94 :    
95 :     * R/sparseMatrix.R: Matrix <-> graph methods: can no longer use
96 :     the C code depending on a slot structure that's no longer valid.
97 :     * src/dgTMatrix.c: dito (also: src/init.c src/dgTMatrix.h)
98 :    
99 :    
100 : bates 1268 2006-05-17 Douglas Bates <bates@stat.wisc.edu>
101 :    
102 :     * R/{AllGeneric.R,Csparse.R},man/band.Rd,NAMESPACE: changed name
103 :     of lowerTriMatrix generic and methods to tril (also upper to triu)
104 :     and added a general band extractor.
105 :    
106 : bates 1267 2006-05-16 Douglas Bates <bates@stat.wisc.edu>
107 :    
108 :     * R/pedigree.R (pedigree): Replace sire and dam values outside the
109 :     allowable range with NAs. Added a corresponding check in the
110 :     validity check for the pedigree class.
111 :    
112 :     * R/[CT]sparse.R ([t]crossprod): The result of single-argument
113 :     crossprod methods now inherits from symmetricMatrix.
114 :    
115 : bates 1265 2006-05-15 Douglas Bates <bates@stat.wisc.edu>
116 :    
117 :     * R/AllGeneric.R (lowerTriMatrix): Added (but did not export)
118 :     generics lowerTriMatrix and upperTriMatrix along with methods for
119 :     the Csparse virtual class. Also added a C function Csparse_band
120 :     that implements these methods by calling cholmod_band.
121 :    
122 : maechler 1264 2006-05-15 Martin Maechler <maechler@stat.math.ethz.ch>
123 :    
124 :     * R/Tsparse.R ("["): column or row subsetting; @Dimnames[k] got
125 :     erased when it was NULL. This led to invalid subselections!
126 :    
127 : bates 1259 2006-04-25 Douglas Bates <bates@stat.wisc.edu>
128 :    
129 :     * R/dtCMatrix.R: avoid coercion of dtCMatrix object to dgCMatrix
130 :     in method for "t" so as not to lose the unit diagonal property.
131 :    
132 : bates 1257 2006-04-19 Douglas Bates <bates@stat.wisc.edu>
133 :    
134 :     * R/lmer.R, R/AllGeneric.R, NAMESPACE: Remove the postVar generic
135 :     and methods. This is now an option to the ranef method for the
136 :     mer class.
137 :    
138 :     * src/cs_utils.c: Ensure that the nz component is -1 for a
139 :     compressed column-oriented matrix. Minor formatting cleanup.
140 :    
141 :     * man/lmer-class.Rd: Document the qqmath method for ranef.lmer
142 :     objects.
143 :    
144 : maechler 1253 2006-04-19 Martin Maechler <maechler@stat.math.ethz.ch>
145 :    
146 :     * R/Auxiliaries.R (diagU2N): new for the solve() methods in
147 :     * R/dtCMatrix.R: where dgC -> dgT coercion now preserves diag = "U".
148 :    
149 : bates 1251 2006-04-15 Douglas Bates <bates@stat.wisc.edu>
150 :    
151 :     * src/cs.[ch],src/cs_utils.[ch] : Added Tim Davis' CSparse library
152 :     in cs.[ch] and utilities to interface to that code in cs_utils.[ch].
153 :    
154 :     * R/dtCMatrix.R, src/dtCMatrix.[ch] : CSparse-based solve methods
155 :     for the dtCMatrix class.
156 : maechler 1253
157 : bates 1247 2006-04-12 Douglas Bates <bates@stat.wisc.edu>
158 :    
159 :     * R/pedigree.R, R/AllClass.R, NAMESPACE: added a pedigree class
160 :     and methods for it.
161 :    
162 : maechler 1245 2006-04-12 Martin Maechler <maechler@stat.math.ethz.ch>
163 :    
164 :     * R/dgCMatrix.R: add storage.mode(.) <- "double" for "matrix"
165 :     arguments, such that M %*% 1:6 now works
166 :     * Tests/matprod.R: test the above
167 :    
168 : bates 1244 2006-04-03 Douglas Bates <bates@stat.wisc.edu>
169 : bates 1243
170 :     * R/lmer.R (qqmath,ranef.lmer-method): added a qqmath method for
171 :     the ranef.lmer class.
172 :    
173 :     * R/AllClass.R, NAMESPACE, R/lmer.R: Added a postVar generic and
174 :     methods to extract the posterior variances from the bVar slot.
175 :    
176 : maechler 1238 2006-03-30 Martin Maechler <maechler@stat.math.ethz.ch>
177 :    
178 :     * R/dtCMatrix.R: allow coercion from dgC* to triangular (dtC*)
179 :     * R/dsCMatrix.R: and symmetric (dsC*) 'Csparse' matrices.
180 :    
181 :     * R/Tsparse.R: Tsparse* -> Csparse* coercion now works and is tested in
182 :     * tests/simple: (extended)
183 :    
184 :     * R/sparseMatrix.R (isTriangular): now using much improved
185 :     * R/Auxiliaries.R (isTriC): new triangularity check for *CMatrix
186 :    
187 : bates 1236 2006-03-23 Douglas Bates <bates@stat.wisc.edu>
188 :    
189 :     * src/dsyMatrix.c (dsyMatrix_as_dspMatrix): Propagate DimNames
190 :     (problem report from Franklin Parlamis). This should be done
191 : maechler 1238 generally.
192 : bates 1236
193 : bates 1234 2006-03-21 Douglas Bates <bates@stat.wisc.edu>
194 :    
195 :     * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
196 :     ranef.lmer (like summary.lmer). Add the coef.lmer class and
197 :     update the plot methods.
198 :    
199 : bates 1232 2006-03-20 Douglas Bates <bates@stat.wisc.edu>
200 :    
201 :     * R/lmer.R (resid and ranef methods): Added methods for the
202 :     "residuals" and "resid" generic but only for linear mixed model
203 :     fits. Changed the ranef method to return a list of data frames so
204 :     that the plot methods now work.
205 :    
206 : bates 1230 2006-03-16 Douglas Bates <bates@bates2>
207 :    
208 :     * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
209 :     dpotrf - otherwise the BLAS on Mac OS X complains and quits.
210 :    
211 :     * DESCRIPTION (Date): New release
212 :    
213 : maechler 1228 2006-03-15 Martin Maechler <maechler@stat.math.ethz.ch>
214 :    
215 :     * DESCRIPTION (Version): 0.995-6 -- to be released to CRAN
216 :    
217 :     * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
218 :     * man/KNex.Rd: and other help files
219 :     * tests/*.R: several ones needed adaption
220 :     * inst/doc/Comparisons.Rnw: dito
221 :    
222 : maechler 1226 2006-03-11 Martin Maechler <maechler@stat.math.ethz.ch>
223 :    
224 :     * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
225 :    
226 :     * tests/indexing.R: tests for new [<- methods for sparse matrices.
227 :    
228 :     2006-03-10 Martin Maechler <maechler@stat.math.ethz.ch>
229 :    
230 :     * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
231 :    
232 :     * R/Tsparse.R (.ind.prep): fix out-of-range indexing
233 :    
234 :     2006-03-08 Martin Maechler <maechler@stat.math.ethz.ch>
235 :    
236 :     * R/dMatrix.R: enable things like M [ M < 10 ]
237 :     * R/dgeMatrix.R: implement it
238 :    
239 : maechler 1222 2006-03-06 Martin Maechler <maechler@stat.math.ethz.ch>
240 :    
241 :     * R/AllClass.R: define "summary.mer" and "*.lmer"
242 :     * R/lmer.R (summary): summary(<mer>) computes & returns the above;
243 :     * R/lmer.R (show): now works with summary()
244 :    
245 :     2006-03-04 Martin Maechler <maechler@stat.math.ethz.ch>
246 :    
247 :     * R/dgCMatrix.R: finally direct "Arith" dgC o dgC
248 :     * R/Auxiliaries.R (WhichintersectInd): and other utilities to
249 :     support the above
250 :    
251 : bates 1213 2006-02-07 Douglas Bates <bates@stat.wisc.edu>
252 :    
253 :     * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.
254 :     Use glmFit$prior.weights for weights in a glmm.
255 :     Allow an option usePQL = FALSE to skip the PQL steps for the
256 :     Laplace method (and, in time, the AGQ method).
257 :    
258 :     * src/lmer.c (mer_factor): Move downdating and factoring of XtX
259 :     into a separate function internal_mer_Xfactor to be able to call
260 :     it from internal_bhat.
261 :    
262 : maechler 1200 2006-01-23 Martin Maechler <maechler@stat.math.ethz.ch>
263 :    
264 :     * tests/Class+Meth.R (tstMatrixClass): function for much better
265 :     testing; now again of all actual classes.
266 :    
267 :     * src/Mutils.c (MAKE_TRIANGULAR_BODY, MAKE_SYMMETRIC_BODY):
268 :     use macros and define make_d_matrix_* and make_i_matrix_*
269 :     where _i_ is for the ldense routines:
270 :    
271 :     * src/ldense.c (ltrMatrix_as_lgeMatrix): provide functions
272 :     * src/ldense.c (lsyMatrix_as_lgeMatrix):
273 :    
274 :     * R/ldenseMatrix.R: use the above in setAs(*,"lgeMatrix")
275 :    
276 :    
277 : maechler 1174 2006-01-16 Martin Maechler <maechler@stat.math.ethz.ch>
278 :    
279 :     * R/Matrix.R (Matrix): has become much "smarter" now auto-producing
280 :     many different kinds of matrices.
281 :     * R/*.R: quite a few new methods were needed for R CMD check with
282 :     new Matrix(). Very good for users playing around.
283 :    
284 :    
285 : maechler 1165 2006-01-15 Martin Maechler <maechler@stat.math.ethz.ch>
286 :    
287 :     * src/dgeMatrix.c (dMatrix_validate): new
288 :     * src/Mutils.c (dense_nonpacked_validate): new
289 :    
290 :     * src/dtrMatrix.c (dtrMatrix_validate): improved/fixed
291 :    
292 :    
293 :     2006-01-14 Douglas Bates <bates@stat.wisc.edu>
294 :    
295 :     * R/AllClass.R (compMatrix), (generalMatrix): new virtual classes
296 :    
297 : bates 1123 2006-01-07 Douglas Bates <bates@stat.wisc.edu>
298 : bates 1119
299 : maechler 1127 * DESCRIPTION (Version): 0.99-6 released to CRAN
300 :    
301 : bates 1119 * src/dgBCMatrix.c (cscb_trcbsm): Fix due to Peter Dalgaard for
302 :     segfault in cases with multiple non-nested grouping factors.
303 :    
304 : maechler 1109 2006-01-03 Martin Maechler <maechler@stat.math.ethz.ch>
305 :    
306 :     * DESCRIPTION (Version): 0.99-4 to be released to CRAN
307 :     (Depends): also on 'utils'
308 :    
309 :     * R/AllClass.R (diagonalMatrix): new class with "ddi*" and "ldi*"
310 :     * R/diagMatrix.R (Diagonal): constructor and methods for
311 :     diagonal matrices
312 :    
313 :     * R/ltTMatrix.R: new "minimal methods"
314 :    
315 : maechler 1091 2005-12-12 Martin Maechler <maechler@stat.math.ethz.ch>
316 :    
317 :     * R/AllGeneric.R (tcrossprod): 2-argument version; here, and for
318 :     all methods (and help files).
319 :    
320 : maechler 1084 2005-12-09 Martin Maechler <maechler@stat.math.ethz.ch>
321 :    
322 :     * R/Auxiliaries.R (dimNamesCheck): fixed thinko -> bug
323 :     for case (dimn. op no_dimn.)
324 :    
325 :     2005-11-14 Douglas Bates <bates@stat.wisc.edu>
326 :    
327 : maechler 1174 * DESCRIPTION (Version): 0.99-2 released to CRAN
328 : maechler 1084
329 : bates 988 2005-10-21 Douglas Bates <bates@stat.wisc.edu>
330 :    
331 :     * R/lmer.R (simulate method): Fixed a drop=FALSE problem reported
332 :     by Julian Faraway.
333 :    
334 : maechler 976 2005-10-06 Martin Maechler <maechler@stat.math.ethz.ch>
335 :    
336 :     * R/Auxiliaries.R (try_as): new utility
337 :     * R/sparseMatrix.R: use try_as() in coercion to original class
338 :    
339 : maechler 956 2005-09-30 Martin Maechler <maechler@stat.math.ethz.ch>
340 :    
341 :     * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
342 :    
343 :     2005-09-29 Martin Maechler <maechler@stat.math.ethz.ch>
344 :    
345 :     * R/Auxiliaries.R (dimNamesCheck): added
346 :    
347 :     * R/Matrix.R (as.array), (as.vector): new
348 :    
349 : maechler 954 2005-09-28 Martin Maechler <maechler@stat.math.ethz.ch>
350 :    
351 :     * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
352 : maechler 956 default.
353 :     * R/AllClass.R: move 'factors' slot toplevel "Matrix";
354 :     "pMatrix" now contains "sparseMatrix"
355 : maechler 954
356 : maechler 948 2005-09-26 Martin Maechler <maechler@stat.math.ethz.ch>
357 :    
358 :     * tests/Class+Meth.R: new tests; t(t(m)) == m
359 :    
360 :     * src/dtCMatrix.c (tsc_transpose): add forgotten "diag" slot
361 :    
362 :     * src/dsTMatrix.c (dsTMatrix_as_dsCMatrix): bad typo (segfault!)
363 :     * src/dtTMatrix.c (dtTMatrix_as_dtCMatrix): new
364 :    
365 :     * R/dspMatrix.R: typo in "t" method
366 :    
367 : maechler 925 2005-09-18 Douglas Bates <bates@wisc.edu>
368 :    
369 :     * R/AllClass.R (TsparseMatrix), CsparseM* and RsparseM*
370 :     * R/Tsparse.R: instead of R/gTMatrix.R
371 :     * R/Csparse.R: new
372 :     * src/Tsparse.c (Tsparse_to_Csparse): new; -> cholmod_()
373 :     * src/Tsparse.c: new; many trivial methods calling cholmod_()
374 :     * src/Csparse.c (Csparse_to_Tsparse), transpose, (mat|cross)prod:
375 :     via cholmod
376 :    
377 :     2005-09-16 Martin Maechler <maechler@stat.math.ethz.ch>
378 :    
379 :     * R/Auxiliaries.R (non0ind): new function using new C code
380 :     * src/dgCMatrix.c (compressed_non_0_ij): new utility
381 :    
382 : bates 917 2005-09-15 Douglas Bates <bates@localhost.localdomain>
383 :    
384 :     * src/chm_common.h: header file required by all C sources that
385 : maechler 1174 call CHOLMOD functions. It defines a cholmod_common structure
386 : bates 917 called 'c' whose address is passed as the last argument to
387 :     (virtually) every CHOLMOD function.
388 :    
389 :     * src/Pattern.c: Simple example of the use of CHOLMOD.
390 :    
391 :     * src/init.c: initialize and finalize the cholmod_common structure.
392 :    
393 :     * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
394 :     LDL and CCOLAMD from the U. of Florida sparse matrix library.
395 :    
396 : maechler 908 2005-09-08 Martin Maechler <maechler@stat.math.ethz.ch>
397 :    
398 :     * inst/test-tools.R: new file collecting the utility functions used
399 :     in ./tests/*.R
400 :    
401 :     * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
402 :     * R/Matrix.R (cbind2): methods for NULL and missing
403 :    
404 : maechler 886 2005-08-31 Martin Maechler <maechler@stat.math.ethz.ch>
405 :    
406 :     * R/AllClass.R: new "index" class for "[" and "[<-":
407 :     First cut at "symmetricMatrix" and "triangularMatrix"
408 :     * R/gTMatrix.R (.ind.prep): new function;
409 : maechler 1174 Logical and character indexing now work too.
410 : maechler 886 * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
411 :     * tests/indexing.R: new, including *.Rout.save
412 :     * tests/dgTMatrix.R: new
413 :    
414 : bates 876 2005-08-29 Douglas Bates <bates@wisc.edu>
415 :    
416 :     * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
417 :     indicator pos not being updated. Also enforced upper triangular
418 :     for symmetric case. Need to coerce edges component of elements of
419 :     edge list - grr! (Why don't they define their classes cleanly?)
420 :    
421 : maechler 871 2005-08-26 Martin Maechler <maechler@stat.math.ethz.ch>
422 :    
423 :     * R/Matrix.R: added first "[<-" methods; not yet functional
424 :     * R/denseMatrix.R: dito
425 :     * man/Subassign-methods.Rd: new help file for these
426 :    
427 :     2005-08-25 Martin Maechler <maechler@stat.math.ethz.ch>
428 :    
429 :     * DESCRIPTION (Version): 0.98-6
430 :    
431 :     * R/denseMatrix.R: new file for "[" fallback methods for all dense
432 :     matrices.
433 :    
434 : maechler 868 2005-08-19 Martin Maechler <maechler@stat.math.ethz.ch>
435 :    
436 :     * src/lgCMatrix.c (lcsc_to_matrix): new; need for
437 :     as( <logical>, "matrix")
438 :    
439 :     * R/pMatrix.R: coercion to "lgTMatrix"
440 :    
441 :     * R/gTMatrix.R: new virtual class to define "[" methods for.
442 :     * man/gTMatrix-class.Rd:
443 :     * General slight re-organization of where "[" methods are defined.
444 :     more to come.
445 :    
446 : maechler 871 2005-08-18 Douglas Bates <bates@wisc.edu>
447 : maechler 868
448 : maechler 1174 * DESCRIPTION (Version): 0.98-5 released to CRAN
449 : maechler 871
450 :     * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
451 :     * .....
452 :    
453 : bates 863 2005-08-18 Douglas Bates <bates@localhost.localdomain>
454 :    
455 :     * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
456 :     or glmer objects.
457 :    
458 : maechler 860 2005-08-17 Martin Maechler <maechler@stat.math.ethz.ch>
459 :    
460 :     * DESCRIPTION (Version): 0.98-4 : upload to CRAN
461 :    
462 :     2005-08-16 Douglas Bates <bates@localhost.localdomain>
463 :    
464 :     * R/HBMM.R: finish re-writing R-only code.
465 :    
466 : bates 854 2005-08-15 Douglas Bates <bates@localhost.localdomain>
467 :    
468 :     * man/externalFormats.Rd: move documentation for writeHB and
469 :     writeMM here.
470 :    
471 :     * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
472 :     (suggested by Paul Roecker).
473 :    
474 :     * tests/validObj.R (assertError): Comment out test that is failing
475 :     after recent changes in r-devel.
476 :    
477 : maechler 860
478 : maechler 848 2005-08-11 Martin Maechler <maechler@stat.math.ethz.ch>
479 :    
480 :     * R/AllClass.R: intermediate virtual class "denseMatrix"
481 :     * man/denseMatrix-class.Rd
482 :     * NAMESPACE: export it, and also export
483 :     * man/unused-classes.Rd: "iMatrix", "zMatrix" and "ldenseMatrix"
484 :    
485 : bates 846 2005-08-10 Douglas Bates <bates@wisc.edu>
486 :    
487 : maechler 848 * DESCRIPTION (Version): 0.98-3 to CRAN
488 :    
489 : bates 846 * src/dtrMatrix.c (dtrMatrix_validate): fixed up validation and
490 :     matrix_solve code (which was really, really wrong).
491 :    
492 : bates 835 2005-08-07 Douglas Bates <bates@wisc.edu>
493 : maechler 834
494 :     * DESCRIPTION (Version): 0.98-2
495 :    
496 :     * R/HBMM.R (readHB), (readMM): read Matrix Market formats
497 :    
498 :     * R/lmer.R (abbrvNms): new
499 :     * R/lmer.R (mcmcsamp): allow transformed parameters
500 : bates 835 * src/HBMM.c (Matrix_writeMatrixMarket): Added read/write routines
501 :     for the Harwell-Boeing and the MatrixMarket formats.
502 : maechler 834
503 :     2005-08-04 Martin Maechler <maechler@stat.math.ethz.ch>
504 :    
505 :     * man/dtrMatrix-class.Rd: add examples
506 : bates 835 * man/dtpMatrix-class.Rd: ditto; plus note about PROBLEM
507 : maechler 834
508 :     * TODO: note the dtpMatrix (docu) bug
509 :    
510 :     * R/zzz.R (.onLoad): assignInNamespace("as.matrix", *, "base")
511 :     in order to ensure that new as.matrix() is used by old functions,
512 :     e.g., svd(), qr(), eigen(), dist(),..;
513 :     apply(), also matplot() or pairs().
514 :    
515 :    
516 :     2005-08-03 Martin Maechler <maechler@stat.math.ethz.ch>
517 :    
518 :     * R/lmer.R: add 'fixme' comments and move the linear vs glm check;
519 :     add comments about 'control' / lmerControl() arguments
520 :    
521 : bates 835 2005-07-27 Douglas Bates <bates@wisc.edu>
522 : bates 820
523 : bates 835 * man/sleepstudy.Rd: Added the sleep data set.
524 : maechler 1174 * DESCRIPTION (Version): 0.98-1 released to CRAN
525 : bates 820
526 : bates 835 2005-07-12 Douglas Bates <bates@wisc.edu>
527 : maechler 834 * man/sleepstudy.Rd: Added the sleep data set.
528 :    
529 : bates 809 * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
530 :     .Call calls that were producing spurious output.
531 :    
532 : bates 835 2005-07-05 Douglas Bates <bates@wisc.edu>
533 : bates 801
534 :     * R/lmer.R (lmer): stored updated variance component estimates in
535 :     mer object for the generalized model. (Bug reported by Renaud
536 :     Lancelot).
537 :    
538 : bates 835 2005-07-03 Douglas Bates <bates@wisc.edu>
539 : bates 794
540 :     * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
541 :     unidimensional case.
542 :    
543 : bates 835 2005-06-08 Douglas Bates <bates@wisc.edu>
544 : maechler 791
545 :     * DESCRIPTION (Version): 0.96-1
546 :    
547 : maechler 1174 * moved lmer-class' R and C code moved from lme4 to here
548 : maechler 791
549 : bates 835 2005-06-04 Douglas Bates <bates@wisc.edu>
550 : bates 763
551 :     * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
552 :     (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
553 :    
554 : bates 835 2005-06-02 Douglas Bates <bates@wisc.edu>
555 : bates 763
556 :     * src/Makefile.win: Forgot to update this when Makefile changed.
557 :    
558 : bates 835 2005-05-11 Douglas Bates <bates@wisc.edu>
559 : bates 726
560 :     * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
561 :     bug reported by Kurt Hornik and Michael Hahsler.
562 :    
563 : bates 835 2005-05-10 Douglas Bates <bates@wisc.edu>
564 : bates 725
565 :     * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
566 :     logical sparse matrices. These will also be used in the symbolic
567 :     analysis for lmer objects.
568 :    
569 :     * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
570 :     of b to the result. Fixes bug reported by Jean.Coursol@math.u-psud.fr
571 : maechler 791
572 : bates 835 2005-05-06 Douglas Bates <bates@wisc.edu>
573 : bates 714
574 :     * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
575 :     colMeans, colSums, rowMeans and rowSums.
576 :    
577 : bates 835 2005-04-18 Douglas Bates <bates@wisc.edu>
578 : bates 692
579 :     * src/lgCMatrix.[ch]: code for _validate method and stub for
580 :     multiplication operation.
581 :    
582 :     * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
583 :     to dgetrs.
584 :    
585 :     * src/init.c: Fix cut-and-paste error in definition of
586 :     dgeMatrix_matrix_solve
587 :    
588 :     * src/{many files}: Tighten code by using ALLOC_SLOT.
589 :    
590 : bates 835 2005-04-15 Douglas Bates <bates@wisc.edu>
591 : bates 692
592 :     * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
593 :    
594 :     * DESCRIPTION: Eliminate import of stats.
595 :    
596 : maechler 791
597 : bates 835 2005-04-06 Douglas Bates <bates@wisc.edu>
598 : bates 692
599 :     * R/AllClass.R : add logical sparse matrix classes
600 :    
601 : maechler 687 2005-04-01 Martin Maechler <maechler@stat.math.ethz.ch>
602 :    
603 :     * R/dgTMatrix.R: add "[" method for triplet matrices
604 :     * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
605 :    
606 : bates 835 2005-03-31 Douglas Bates <bates@wisc.edu>
607 : maechler 687
608 :     * DESCRIPTION (Version): release 0.95-5 to CRAN
609 :    
610 :     * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
611 :     * R/sparseMatrix.R: %*%, crossprod()
612 :     * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
613 :     * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
614 :     * src/lmer.c (lmer_fitted): fix thinko
615 :    
616 : maechler 676 2005-03-26 Martin Maechler <maechler@stat.math.ethz.ch>
617 :    
618 :     * R/AllClass.R: add two virtual sparse classes ``on top''
619 :    
620 :     2005-03-24 Martin Maechler <maechler@stat.math.ethz.ch>
621 :    
622 :     * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
623 :     correspondingly fix examples and tests/ since new()
624 :     doesn't work for virtual classes.
625 :    
626 : maechler 658 2005-03-17 Martin Maechler <maechler@stat.math.ethz.ch>
627 :    
628 :     * R/Matrix.R (as.matrix): method and one for unname()
629 :     * tests/dpoMatrix.R: tests should now be less platform dependent;
630 :     also run for R 2.1.0; using as.matrix()
631 :    
632 : bates 835 2005-03-15 Douglas Bates <bates@wisc.edu>
633 : maechler 658
634 :     * R/pMatrix.R: "pMatrix" class added
635 :     * ....
636 :    
637 : bates 835 2005-03-14 Douglas Bates <bates@wisc.edu>
638 : bates 645
639 :     * R/dtpMatrix.R: Add unpack method and an example.
640 :    
641 :     * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
642 :     of general symmetric matrices and associated S4 methods.
643 :    
644 : maechler 658 2005-03-10 Martin Maechler <maechler@stat.math.ethz.ch>
645 :     +
646 :     2005-03-05 Martin Maechler <maechler@stat.math.ethz.ch>
647 :    
648 :     * R/dgeMatrix.R (setAs): and many other files: more coercion,
649 :     crossprod() and "%*%" methods added; tests, too.
650 :     * tests/matprod.R: new, for testing these
651 :    
652 : bates 835 2005-03-03 Douglas Bates <bates@wisc.edu>
653 : bates 599
654 :     * src/lmer.c (lmer_fitted): Added.
655 :    
656 : bates 835 2005-03-02 Douglas Bates <bates@wisc.edu>
657 : bates 596
658 :     * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
659 :    
660 : bates 835 2005-02-28 Douglas Bates <bates@wisc.edu>
661 : bates 582
662 :     * src/*.c,po/,inst/po: Internationalization and localization of
663 :     the package.
664 :    
665 :     * src/ldl.[ch]: Removed these as their contents are referenced in the
666 :     R_ldl.c file.
667 :    
668 :     * src/flame.[ch]: Removed these source files.
669 : maechler 658
670 : bates 582 * src/dtrMatrix.c (make_array_triangular): Move to Mutils
671 :    
672 :     * src/LU.[ch],src/init.c: absorb in factorizations
673 :    
674 :     * src/Mutils.h: prepare for internationalization
675 :    
676 :     * src/cblas.h: move the enum definitions to Mutils.h and remove
677 :     this file
678 :    
679 : maechler 578 2005-02-26 Martin Maechler <maechler@stat.math.ethz.ch>
680 :    
681 : maechler 579 * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
682 :    
683 :     * R/dtrMatrix.R: fix t() method
684 :    
685 : maechler 578 * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
686 : maechler 658 * NAMESPACE: export them (and import generics from "methods")
687 : maechler 578 * tests/group-methods.R : and test them.
688 :    
689 :     * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
690 :     border case
691 :    
692 :     2005-02-24 Douglas Bates <bates@stat.wisc.edu>
693 :    
694 : maechler 658 * DESCRIPTION (Version): 0.95-2 released to CRAN
695 : maechler 578
696 :     * src/dgBCMatrix.c:
697 :     * src/lmer.c: many changes
698 :     * ...
699 :    
700 : maechler 512 2005-02-04 Martin Maechler <maechler@stat.math.ethz.ch>
701 :    
702 :     * R/Matrix.R: add more sophisticated show() method.
703 :    
704 : maechler 578 2005-02-02 Douglas Bates <bates@stat.wisc.edu>
705 :    
706 :     * */* : almost complete reorganization of classes.
707 :    
708 : bates 835 2005-01-26 Douglas Bates <bates@wisc.edu>
709 : bates 460
710 :     * R/AllGeneric.R: Added matrix exponential generic expm and a method
711 :     for the geMatrix class.
712 :    
713 : bates 835 2005-01-24 Douglas Bates <bates@wisc.edu>
714 : bates 460
715 :     * src/Makefile (clean): Remove *.a and *.so
716 :    
717 :     * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
718 :    
719 : bates 835 2005-01-23 Douglas Bates <bates@wisc.edu>
720 : bates 460
721 : maechler 658 * src/lmer.c (Lind): Definition of Lind was backwards. This only
722 : bates 460 had an effect in cases with more than 2 grouping factors.
723 :    
724 : bates 835 2005-01-03 Douglas Bates <bates@wisc.edu>
725 : bates 415
726 :     * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
727 :    
728 : bates 835 2004-12-23 Douglas Bates <bates@wisc.edu>
729 : bates 410
730 :     * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
731 :     and R_useDynamicSymbols (suggested by B.D.Ripley).
732 :    
733 : bates 835 2004-12-14 Douglas Bates <bates@wisc.edu>
734 : bates 392
735 :     * R/sscMatrix.R: Add determinant methods
736 :    
737 :     * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
738 :     for tripletMatrix to matrix.
739 :    
740 : bates 835 2004-12-13 Douglas Bates <bates@wisc.edu>
741 : bates 388
742 : bates 392 * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
743 :     no longer used.
744 :    
745 : bates 388 * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
746 :     with dynamic allocation of scratch arrays.
747 :    
748 :     * src/ssclme.c (ssclme_copy_ctab): Fixed bug in creation of ZtZ
749 :     for multivariate random effects with multiple grouping factors.
750 :     Fixes part but not all of #15.
751 :    
752 : bates 835 2004-12-03 Douglas Bates <bates@wisc.edu>
753 : bates 375
754 :     * src/lmeRep.c (lmeRep_factor): order of operations for multiple
755 :     scalar grouping factors corrected.
756 :    
757 : bates 835 2004-11-29 Douglas Bates <bates@wisc.edu>
758 : bates 375
759 :     * src/bCrosstab.c: remove diag_update which is no longer used
760 :    
761 : bates 835 2004-11-16 Douglas Bates <bates@wisc.edu>
762 : bates 350
763 :     * src/Metis_utils.c: Move metis.h include to C sources so that the
764 :     .h file can be included.
765 :    
766 : bates 835 2004-11-12 Douglas Bates <bates@wisc.edu>
767 : bates 342
768 : bates 350 * src/LU.c,geMatrix.c,trMatrix.c, etc.:
769 : bates 342 Complete allocation of slots in NEW_OBJECT.
770 :    
771 :     * src/Mutils.h: Moved list of symbols to an include file
772 :    
773 : bates 835 2004-11-11 Douglas Bates <bates@wisc.edu>
774 : bates 342
775 :     * src/geMutils.c (Matrix_init): remove unused function
776 :    
777 : bates 835 2004-11-10 Douglas Bates <bates@wisc.edu>
778 : bates 342
779 :     * src/cscMatrix.c (csc_to_imagemat): removed unused function
780 :    
781 : bates 835 2004-11-05 Douglas Bates <bates@wisc.edu>
782 : bates 327
783 :     * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
784 :    
785 : bates 835 2004-10-27 Douglas Bates <bates@wisc.edu>
786 : bates 303
787 :     * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
788 :    
789 : bates 835 2004-10-04 Douglas Bates <bates@wisc.edu>
790 : bates 296
791 :     * src/init.c: Created R_init_Matrix and added registration of C
792 :     routines.
793 :    
794 : bates 835 2004-10-02 Douglas Bates <bates@wisc.edu>
795 : bates 283
796 :     * R/tripletMatrix.R: Force a require(lattice) for the image methods.
797 :    
798 : bates 835 2004-06-15 Douglas Bates <bates@wisc.edu>
799 : bates 229
800 :     * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
801 :    
802 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
803 :    
804 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
805 :    
806 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
807 :    
808 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
809 :     ssclme_update_mm
810 :    
811 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
812 :    
813 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
814 :     in the order of unconstrained and constrained parameters.
815 :     (ssclme_gradient): Added the gradients (not yet correct for
816 :     multidimensional, unconstrained case).
817 :    
818 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
819 :    
820 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
821 :    
822 :     * src/Makefile.win: Remove unneeded ranlib call
823 :    
824 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
825 :    
826 :     * DESCRIPTION (Version): New release
827 :    
828 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
829 :    
830 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
831 :    
832 :     * src/triplet_to_col.c: Create triplet_to_col as a native
833 : maechler 658 function, not the version from umfpack. There were problems with
834 : bates 49 the configuration of UMFPACK for 64-bit processors and there was
835 :     only one umfpack routine being used so I moved it here.
836 :    
837 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
838 :    
839 :     * src/ssclme.c (ssclme_variances): New function.
840 :    
841 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
842 :    
843 :     * src/ssclme.c (ssclme_fitted): Added function.
844 :    
845 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
846 :    
847 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
848 :     store the dimnames in the XtX and bVar slots
849 :     (ssclme_update_mm): Change the dimensions of the bVar slot
850 :     components and the returned value from ssclme_ranef.
851 :    
852 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
853 :    
854 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
855 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
856 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
857 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
858 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
859 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
860 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
861 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
862 :     Moved the pdMat classes from the lme4 package.
863 :    
864 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
865 :    
866 :     * man/ssclme-class.Rd: Update definition and documentation of the
867 :     ssclme class to include the DIsqrt slot.
868 :    
869 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
870 :     (much faster using dsyrk, a level 3 BLAS routine).
871 :    
872 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
873 :    
874 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
875 :    
876 :     * tests/ssclme.R: Modify the test to account for the permutation
877 :     of the levels of the grouping factors.
878 :    
879 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
880 :    
881 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
882 :     directly into the ssclme class definition.
883 :    
884 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
885 :    
886 :     * DESCRIPTION (Date): New release
887 :    
888 :     * man/ssclme-class.Rd: new file.
889 :    
890 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
891 :     works and it's fast!
892 :    
893 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
894 :    
895 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
896 :    
897 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
898 :    
899 :     * DESCRIPTION (Date): New release
900 :    
901 :     * NAMESPACE: Don't export ssclme.
902 :    
903 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
904 :     school data.
905 :    
906 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
907 :    
908 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
909 :     keep track of the fixed-effects and the response. Counts also
910 :     gets an extra element, which is always one.
911 :    
912 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
913 :    
914 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
915 :    
916 :     * src/cscMatrix.c (csc_transpose): new function
917 :    
918 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
919 :     (csc_components_transpose): new function
920 :    
921 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
922 :    
923 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
924 :     triplets
925 :    
926 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
927 :    
928 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
929 :    
930 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
931 :     and all other .h files in src.
932 :    
933 :     * src/Makefile.win: This and other Makefile.win files contributed
934 :     by Brian Ripley.
935 :    
936 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
937 :    
938 :     * R/syMatrix.R: Added methods for "%*%".
939 :    
940 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
941 :     poMatrix object.
942 :    
943 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
944 :    
945 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
946 :    
947 :     2004-01-25 Douglas Bates <bates@bates2_home>
948 :    
949 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
950 :    
951 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
952 :     of nrow.
953 :    
954 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
955 :    
956 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
957 :     subdirectories.
958 :    
959 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
960 :    
961 :     * src/taucs.h: Accidently referred to global header files
962 :     instead of local files.
963 :    
964 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
965 :    
966 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
967 :     and methods and replaced all classes with S4 classes.
968 :    
969 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
970 :    
971 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
972 :    
973 :     * src/R_LapackPP.cc: Change method of calculating determinants
974 :    
975 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
976 :    
977 :     * DESCRIPTION (Version): removed empty data directory as requested
978 :     by CRAN maintainers. Changed version number and date.
979 :    
980 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
981 :    
982 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
983 :     under Windows.
984 :    
985 :     * Added configure.win and src/Makevars.win as requested by Brian
986 :     Ripley.
987 :    
988 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
989 :    
990 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
991 :     Hornik.
992 :    
993 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
994 :    
995 :     * configure.ac: Replaced configure.in with configure.ac
996 :     contributed by Kurt Hornik.
997 :    
998 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
999 :     version for R-1.5.0
1000 :    
1001 : maechler 512
1002 : bates 10 2001-12-10 Douglas Bates <bates@stat.wisc.edu>
1003 :    
1004 :     * man/eigen.Rd: Removed the .Alias in the example

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