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Annotation of /pkg/ChangeLog

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1 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
2 :    
3 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
4 :    
5 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
6 :    
7 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
8 :     ssclme_update_mm
9 :    
10 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
11 :    
12 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
13 :     in the order of unconstrained and constrained parameters.
14 :     (ssclme_gradient): Added the gradients (not yet correct for
15 :     multidimensional, unconstrained case).
16 :    
17 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
18 :    
19 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
20 :    
21 :     * src/Makefile.win: Remove unneeded ranlib call
22 :    
23 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
24 :    
25 :     * DESCRIPTION (Version): New release
26 :    
27 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
28 :    
29 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
30 :    
31 :     * src/triplet_to_col.c: Create triplet_to_col as a native
32 :     function, not the version from umfpack. There were problems with
33 :     the configuration of UMFPACK for 64-bit processors and there was
34 :     only one umfpack routine being used so I moved it here.
35 :    
36 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
37 :    
38 :     * src/ssclme.c (ssclme_variances): New function.
39 :    
40 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
41 :    
42 :     * src/ssclme.c (ssclme_fitted): Added function.
43 :    
44 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
45 :    
46 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
47 :     store the dimnames in the XtX and bVar slots
48 :     (ssclme_update_mm): Change the dimensions of the bVar slot
49 :     components and the returned value from ssclme_ranef.
50 :    
51 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
52 :    
53 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
54 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
55 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
56 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
57 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
58 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
59 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
60 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
61 :     Moved the pdMat classes from the lme4 package.
62 :    
63 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
64 :    
65 :     * man/ssclme-class.Rd: Update definition and documentation of the
66 :     ssclme class to include the DIsqrt slot.
67 :    
68 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
69 :     (much faster using dsyrk, a level 3 BLAS routine).
70 :    
71 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
72 :    
73 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
74 :    
75 :     * tests/ssclme.R: Modify the test to account for the permutation
76 :     of the levels of the grouping factors.
77 :    
78 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
79 :    
80 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
81 :     directly into the ssclme class definition.
82 :    
83 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
84 :    
85 :     * DESCRIPTION (Date): New release
86 :    
87 :     * man/ssclme-class.Rd: new file.
88 :    
89 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
90 :     works and it's fast!
91 :    
92 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
93 :    
94 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
95 :    
96 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
97 :    
98 :     * DESCRIPTION (Date): New release
99 :    
100 :     * NAMESPACE: Don't export ssclme.
101 :    
102 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
103 :     school data.
104 :    
105 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
106 :    
107 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
108 :     keep track of the fixed-effects and the response. Counts also
109 :     gets an extra element, which is always one.
110 :    
111 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
112 :    
113 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
114 :    
115 :     * src/cscMatrix.c (csc_transpose): new function
116 :    
117 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
118 :     (csc_components_transpose): new function
119 :    
120 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
121 :    
122 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
123 :     triplets
124 :    
125 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
126 :    
127 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
128 :    
129 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
130 :     and all other .h files in src.
131 :    
132 :     * src/Makefile.win: This and other Makefile.win files contributed
133 :     by Brian Ripley.
134 :    
135 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
136 :    
137 :     * R/syMatrix.R: Added methods for "%*%".
138 :    
139 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
140 :     poMatrix object.
141 :    
142 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
143 :    
144 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
145 :    
146 :     2004-01-25 Douglas Bates <bates@bates2_home>
147 :    
148 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
149 :    
150 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
151 :     of nrow.
152 :    
153 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
154 :    
155 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
156 :     subdirectories.
157 :    
158 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
159 :    
160 :     * src/taucs.h: Accidently referred to global header files
161 :     instead of local files.
162 :    
163 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
164 :    
165 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
166 :     and methods and replaced all classes with S4 classes.
167 :    
168 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
169 :    
170 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
171 :    
172 :     * src/R_LapackPP.cc: Change method of calculating determinants
173 :    
174 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
175 :    
176 :     * DESCRIPTION (Version): removed empty data directory as requested
177 :     by CRAN maintainers. Changed version number and date.
178 :    
179 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
180 :    
181 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
182 :     under Windows.
183 :    
184 :     * Added configure.win and src/Makevars.win as requested by Brian
185 :     Ripley.
186 :    
187 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
188 :    
189 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
190 :     Hornik.
191 :    
192 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
193 :    
194 :     * configure.ac: Replaced configure.in with configure.ac
195 :     contributed by Kurt Hornik.
196 :    
197 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
198 :     version for R-1.5.0
199 :    
200 :    
201 :     2001-12-10 Douglas Bates <bates@stat.wisc.edu>
202 :    
203 :     * man/eigen.Rd: Removed the .Alias in the example

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