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Annotation of /pkg/ChangeLog

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1 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
2 :    
3 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
4 :     in the order of unconstrained and constrained parameters.
5 :     (ssclme_gradient): Added the gradients (not yet correct for
6 :     multidimensional, unconstrained case).
7 :    
8 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
9 :    
10 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
11 :    
12 :     * src/Makefile.win: Remove unneeded ranlib call
13 :    
14 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
15 :    
16 :     * DESCRIPTION (Version): New release
17 :    
18 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
19 :    
20 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
21 :    
22 :     * src/triplet_to_col.c: Create triplet_to_col as a native
23 :     function, not the version from umfpack. There were problems with
24 :     the configuration of UMFPACK for 64-bit processors and there was
25 :     only one umfpack routine being used so I moved it here.
26 :    
27 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
28 :    
29 :     * src/ssclme.c (ssclme_variances): New function.
30 :    
31 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
32 :    
33 :     * src/ssclme.c (ssclme_fitted): Added function.
34 :    
35 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
36 :    
37 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
38 :     store the dimnames in the XtX and bVar slots
39 :     (ssclme_update_mm): Change the dimensions of the bVar slot
40 :     components and the returned value from ssclme_ranef.
41 :    
42 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
43 :    
44 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
45 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
46 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
47 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
48 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
49 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
50 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
51 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
52 :     Moved the pdMat classes from the lme4 package.
53 :    
54 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
55 :    
56 :     * man/ssclme-class.Rd: Update definition and documentation of the
57 :     ssclme class to include the DIsqrt slot.
58 :    
59 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
60 :     (much faster using dsyrk, a level 3 BLAS routine).
61 :    
62 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
63 :    
64 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
65 :    
66 :     * tests/ssclme.R: Modify the test to account for the permutation
67 :     of the levels of the grouping factors.
68 :    
69 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
70 :    
71 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
72 :     directly into the ssclme class definition.
73 :    
74 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
75 :    
76 :     * DESCRIPTION (Date): New release
77 :    
78 :     * man/ssclme-class.Rd: new file.
79 :    
80 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
81 :     works and it's fast!
82 :    
83 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
84 :    
85 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
86 :    
87 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
88 :    
89 :     * DESCRIPTION (Date): New release
90 :    
91 :     * NAMESPACE: Don't export ssclme.
92 :    
93 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
94 :     school data.
95 :    
96 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
97 :    
98 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
99 :     keep track of the fixed-effects and the response. Counts also
100 :     gets an extra element, which is always one.
101 :    
102 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
103 :    
104 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
105 :    
106 :     * src/cscMatrix.c (csc_transpose): new function
107 :    
108 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
109 :     (csc_components_transpose): new function
110 :    
111 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
112 :    
113 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
114 :     triplets
115 :    
116 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
117 :    
118 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
119 :    
120 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
121 :     and all other .h files in src.
122 :    
123 :     * src/Makefile.win: This and other Makefile.win files contributed
124 :     by Brian Ripley.
125 :    
126 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
127 :    
128 :     * R/syMatrix.R: Added methods for "%*%".
129 :    
130 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
131 :     poMatrix object.
132 :    
133 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
134 :    
135 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
136 :    
137 :     2004-01-25 Douglas Bates <bates@bates2_home>
138 :    
139 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
140 :    
141 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
142 :     of nrow.
143 :    
144 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
145 :    
146 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
147 :     subdirectories.
148 :    
149 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
150 :    
151 :     * src/taucs.h: Accidently referred to global header files
152 :     instead of local files.
153 :    
154 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
155 :    
156 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
157 :     and methods and replaced all classes with S4 classes.
158 :    
159 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
160 :    
161 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
162 :    
163 :     * src/R_LapackPP.cc: Change method of calculating determinants
164 :    
165 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
166 :    
167 :     * DESCRIPTION (Version): removed empty data directory as requested
168 :     by CRAN maintainers. Changed version number and date.
169 :    
170 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
171 :    
172 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
173 :     under Windows.
174 :    
175 :     * Added configure.win and src/Makevars.win as requested by Brian
176 :     Ripley.
177 :    
178 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
179 :    
180 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
181 :     Hornik.
182 :    
183 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
184 :    
185 :     * configure.ac: Replaced configure.in with configure.ac
186 :     contributed by Kurt Hornik.
187 :    
188 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
189 :     version for R-1.5.0
190 :    
191 :    
192 :     2001-12-10 Douglas Bates <bates@stat.wisc.edu>
193 :    
194 :     * man/eigen.Rd: Removed the .Alias in the example

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