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Revision 2915 - Directory Listing
Modified Mon Sep 16 14:09:21 2013 UTC (6 years, 2 months ago) by mmaechler
get latest SuiteSparse from Tim Davis, UFlorida (and patch, adapt..)

Revision 2914 - Directory Listing
Modified Mon Sep 16 14:07:11 2013 UTC (6 years, 2 months ago) by mmaechler
new download+patch script; adapt some *.patch files

Revision 2913 - Directory Listing
Modified Mon Sep 16 09:54:19 2013 UTC (6 years, 2 months ago) by mmaechler
improve "printf" patch: (void), not (int)

Revision 2912 - Directory Listing
Modified Sat Sep 14 17:09:49 2013 UTC (6 years, 2 months ago) by mmaechler
also fix the r2910-related solve(<dsC.>, <dense>) bug; more testing if(doExtras), "As" example as *.rda

Revision 2911 - Directory Listing
Modified Sat Sep 14 10:04:11 2013 UTC (6 years, 2 months ago) by mmaechler
add MM-only former AAA_index.R  inside  if(doExtras) { .... }

Revision 2910 - Directory Listing
Modified Fri Sep 13 15:42:07 2013 UTC (6 years, 2 months ago) by mmaechler
now we have fixed the long standing underlying solve(<dsC>)-bug,
we also revert the 1.0-13 __ 1.0-14 stop-gap fix from yesterday

Revision 2909 - Directory Listing
Modified Fri Sep 13 12:51:21 2013 UTC (6 years, 2 months ago) by mmaechler
regression checks for the long-time undetected solve(<dsC..>, *) bug

Revision 2908 - Directory Listing
Modified Fri Sep 13 12:50:06 2013 UTC (6 years, 2 months ago) by mmaechler
solve.dsC.dC(): long-lasting undetected bug: We forget the Q in P'LUQ
-------------  --> now use .solve.sparse.dgC() anyway

Revision 2907 - Directory Listing
Modified Thu Sep 12 22:22:41 2013 UTC (6 years, 2 months ago) by mmaechler
partly revert the solve(<sparse>, .) changes

Revision 2906 - Directory Listing
Modified Thu Sep 12 22:22:09 2013 UTC (6 years, 2 months ago) by mmaechler
all.equal() no longer returns c("TRUE", "...difference..")

Revision 2905 - Directory Listing
Modified Thu Sep 12 21:53:08 2013 UTC (6 years, 2 months ago) by mmaechler
for checking the solve() problem[s]

Revision 2904 - Directory Listing
Modified Tue Sep 10 19:43:53 2013 UTC (6 years, 2 months ago) by mmaechler
export isDiagonal() and isTriangular(): other package like to use them

Revision 2903 - Directory Listing
Modified Tue Sep 10 16:21:29 2013 UTC (6 years, 2 months ago) by mmaechler
less tight test so it works with --disable-long-double

Revision 2902 - Directory Listing
Modified Tue Sep 10 10:56:46 2013 UTC (6 years, 2 months ago) by mmaechler
skip tests that fail on Solaris, for now

Revision 2901 - Directory Listing
Modified Tue Sep 10 10:45:25 2013 UTC (6 years, 2 months ago) by mmaechler
new  Csparse_to_vector() in C --> faster as(*, "vector") methods

Revision 2900 - Directory Listing
Modified Wed Sep 4 08:30:53 2013 UTC (6 years, 2 months ago) by mmaechler
generalize "indMatrix" to allow "0 samples"; colSums() etc; rbind2().
A  %*% tweak for <ldense> o <lsparse>

Revision 2899 - Directory Listing
Modified Tue Sep 3 13:31:16 2013 UTC (6 years, 2 months ago) by mmaechler
pMatrix -> matrix  now from indMatrix method

Revision 2898 - Directory Listing
Modified Mon Sep 2 15:48:30 2013 UTC (6 years, 2 months ago) by mmaechler
3 new C-->R utilities; notably R_set_factors() -> .set.factors() for caching also from R, not just in C

Revision 2897 - Directory Listing
Modified Mon Sep 2 15:46:24 2013 UTC (6 years, 2 months ago) by mmaechler
reformatted ("-" --> "**"); a few new items

Revision 2896 - Directory Listing
Modified Sun Sep 1 18:50:16 2013 UTC (6 years, 2 months ago) by mmaechler
use local variable rather than  dontCheck()

Revision 2895 - Directory Listing
Modified Sat Aug 31 21:51:18 2013 UTC (6 years, 2 months ago) by mmaechler
move all solve() docu in new solve-methods.Rd

Revision 2894 - Directory Listing
Modified Thu Aug 29 20:10:08 2013 UTC (6 years, 2 months ago) by mmaechler
indMatrix - related updates; notably MatrixClass() was "wrong"

Revision 2893 - Directory Listing
Modified Thu Aug 29 20:09:06 2013 UTC (6 years, 2 months ago) by mmaechler
fix two buglets:
- had "perm" instead of "index";
- tabulate() needs nbin = <.> in some cases

Revision 2892 - Directory Listing
Modified Thu Aug 29 09:58:34 2013 UTC (6 years, 2 months ago) by mmaechler
new indMatrix class from Fabian Scheibl

Revision 2891 - Directory Listing
Modified Fri Aug 16 14:09:01 2013 UTC (6 years, 3 months ago) by mmaechler
determinant(<dpoMatrix>) now goes via chol(), i.e. also just using an existing (cached) Cholesky factor

Revision 2890 - Directory Listing
Modified Thu Aug 15 17:34:48 2013 UTC (6 years, 3 months ago) by mmaechler
- fix thinko at at end of solve.sparse.dgC()
- add 'tol' to solve.dgC() and the dependent solve() methods

Revision 2889 - Directory Listing
Modified Thu Aug 8 21:06:22 2013 UTC (6 years, 3 months ago) by mmaechler
Provide  sparse solve() methods for <dgCMatrix> that work via LU decomp.
"Cheap" fix for the lu() -> sometimes/occasionally unsorted columns in resulting L / U matrix bug:
In C, have new  Csparse_sort2(.) version of Csparse_validate() and in 
R a .sortCsparse(.) using .Call(Csparse_sort, x) -- seems to work ok... but want tests and docu;
also can be quite a bit more efficient already in C; -- TODOs

Revision 2888 - Directory Listing
Modified Wed Aug 7 13:56:43 2013 UTC (6 years, 3 months ago) by mmaechler
\link typo; white space

Revision 2887 - Directory Listing
Modified Wed Aug 7 08:50:55 2013 UTC (6 years, 3 months ago) by mmaechler
explain much more (so we can point users here..)

Revision 2886 - Directory Listing
Modified Wed Jul 31 08:33:52 2013 UTC (6 years, 3 months ago) by mmaechler
new optional argument  conv.norm.type="I" 

Revision 2885 - Directory Listing
Modified Fri Jul 26 20:49:21 2013 UTC (6 years, 3 months ago) by mmaechler
solve(<sparse> a, <sparse> b): now if a is symmetric, compute *sparse* result

Revision 2884 - Directory Listing
Modified Fri Jul 5 13:04:05 2013 UTC (6 years, 4 months ago) by mmaechler
update

Revision 2883 - Directory Listing
Modified Thu Jul 4 13:53:50 2013 UTC (6 years, 4 months ago) by mmaechler
update

Revision 2882 - Directory Listing
Modified Thu Jul 4 13:52:42 2013 UTC (6 years, 4 months ago) by mmaechler
using  dontCheck(.)  for latest CRAN checks .. 
but it seems, in vain, for the moment

Revision 2881 - Directory Listing
Modified Wed Jul 3 10:14:19 2013 UTC (6 years, 4 months ago) by mmaechler
provide anyNA(.) methods, for R >= 3.1.0

Revision 2880 - Directory Listing
Modified Wed Jul 3 10:13:08 2013 UTC (6 years, 4 months ago) by mmaechler
rankMatrix(): method="qr.." no longer needs sval --> even more useful for large sparse

Revision 2879 - Directory Listing
Modified Tue Jun 18 07:01:11 2013 UTC (6 years, 5 months ago) by mmaechler
use  lengthgets()  instead of SETLENGTH(): 
[=> advantage: names are dealt with automatically]

Revision 2878 - Directory Listing
Modified Sat May 18 11:27:53 2013 UTC (6 years, 6 months ago) by mmaechler
assert.EQ(): new 'giveRE' argument

Revision 2877 - Directory Listing
Modified Wed May 8 20:59:04 2013 UTC (6 years, 6 months ago) by mmaechler
fix "M[] <- v" bug for unitriangular M

Revision 2876 - Directory Listing
Modified Wed May 8 20:57:08 2013 UTC (6 years, 6 months ago) by mmaechler
cosmetic

Revision 2875 - Directory Listing
Modified Tue May 7 13:26:35 2013 UTC (6 years, 6 months ago) by mmaechler
new KhatriRao()

Revision 2874 - Directory Listing
Modified Fri Apr 12 06:35:25 2013 UTC (6 years, 7 months ago) by mmaechler
update

Revision 2873 - Directory Listing
Modified Fri Apr 12 06:35:15 2013 UTC (6 years, 7 months ago) by mmaechler
factor out assert.EQ()

Revision 2872 - Directory Listing
Modified Tue Mar 26 15:38:09 2013 UTC (6 years, 7 months ago) by mmaechler
translation updates via tools::update_pkg_po(); test output; cosmetic

Revision 2871 - Directory Listing
Modified Tue Mar 26 15:24:42 2013 UTC (6 years, 7 months ago) by mmaechler
re-add a space lost by Lukasz (easier translatable) patches

Revision 2870 - Directory Listing
Modified Sat Mar 23 09:02:59 2013 UTC (6 years, 8 months ago) by mmaechler
+ roxygen

Revision 2869 - Directory Listing
Modified Mon Feb 25 09:30:40 2013 UTC (6 years, 8 months ago) by mmaechler
Remove 'svn rev' check as it is almost surely not triggering nowadays,
[helping Hin-Tak to build R in a way that is explicitly not supported... ]

Revision 2868 - Directory Listing
Modified Sat Feb 2 19:38:06 2013 UTC (6 years, 9 months ago) by mmaechler
now *warn*, when Q is needed in the "struct.rank deficient" case

Revision 2867 - Directory Listing
Modified Sat Feb 2 18:31:28 2013 UTC (6 years, 9 months ago) by mmaechler
Schur(m) now also works for a traditional matrix m

Revision 2866 - Directory Listing
Modified Wed Jan 30 17:09:10 2013 UTC (6 years, 9 months ago) by mmaechler
correct #{arguments} for External Mmatrix

Revision 2865 - Directory Listing
Modified Wed Jan 30 11:14:48 2013 UTC (6 years, 9 months ago) by mmaechler
new utility  is.null.DN() - also used for Matrix construction

Revision 2864 - Directory Listing
Modified Tue Jan 29 21:45:16 2013 UTC (6 years, 9 months ago) by mmaechler
mini patch for "race condition" bug with parallel make: https://r-forge.r-project.org/tracker/?func=detail&atid=294&aid=1723&group_id=61]

Revision 2863 - Directory Listing
Modified Mon Dec 31 20:21:11 2012 UTC (6 years, 10 months ago) by mmaechler
more easily translatable message - "as" from Lukasz Daniel (e: Dec.12, 2012)

Revision 2862 - Directory Listing
Modified Mon Dec 31 14:38:40 2012 UTC (6 years, 10 months ago) by mmaechler
cosmetic; more qr(<rank deficient>) examples

Revision 2861 - Directory Listing
Modified Mon Dec 31 14:36:09 2012 UTC (6 years, 10 months ago) by mmaechler
part 2 of vignettes now in vignettes/

Revision 2860 - Directory Listing
Modified Mon Dec 31 14:35:37 2012 UTC (6 years, 10 months ago) by mmaechler
(comments only)

Revision 2859 - Directory Listing
Modified Mon Dec 31 10:14:20 2012 UTC (6 years, 10 months ago) by mmaechler
start using ./vignettes/ as we require "new R" anyway

Revision 2858 - Directory Listing
Modified Mon Dec 31 10:03:19 2012 UTC (6 years, 10 months ago) by mmaechler
be sure to obey 'dofree'  also in error(..) signalling cases.
(thanks to Henrik Friberg's notice)

Revision 2857 - Directory Listing
Modified Fri Dec 28 08:57:10 2012 UTC (6 years, 10 months ago) by mmaechler
use "domain = NA" wherever  gettextf() is used in stop/warning/message

Revision 2856 - Directory Listing
Modified Sat Dec 8 20:30:52 2012 UTC (6 years, 11 months ago) by mmaechler
as(., "dsCMatrix")  -- deprecation *every* time

Revision 2855 - Directory Listing
Modified Fri Dec 7 07:44:54 2012 UTC (6 years, 11 months ago) by mmaechler
new isSeq(i, n) ( <==> identical(i, 0:n) ) primitive; qr.qy(qq,y) now returns "vector" when y is one

Revision 2854 - Directory Listing
Modified Thu Nov 22 07:54:41 2012 UTC (7 years ago) by mmaechler
qr(<sparse>) --> <sparseQR> : finally address the structurally rank-deficient case where cs_sqr() produces "spurious" extra rows in Q i.e. V, and R; add checking code for that case

Revision 2853 - Directory Listing
Modified Thu Nov 22 07:52:08 2012 UTC (7 years ago) by mmaechler
provide fast C version and export  invPerm()

Revision 2852 - Directory Listing
Modified Sun Nov 18 16:58:18 2012 UTC (7 years ago) by mmaechler
finally *activate* the sparseQR validity method that Doug wrote in Aug.2006 (!)

Revision 2851 - Directory Listing
Modified Mon Nov 12 14:17:09 2012 UTC (7 years ago) by mmaechler
 as(<csr>, "dgCMatrix") works again; Matrix now *runs* in older R even if installed in R >= 2.15.2

Revision 2850 - Directory Listing
Modified Mon Oct 22 13:00:35 2012 UTC (7 years, 1 month ago) by mmaechler
an extra check needed for R-devel (2.16.0) on 32-bit Windows

Revision 2849 - Directory Listing
Modified Sat Oct 20 09:15:33 2012 UTC (7 years, 1 month ago) by mmaechler
cannot use R_SVN_REVISION (inside #if ..) yet

Revision 2848 - Directory Listing
Modified Fri Oct 19 15:17:02 2012 UTC (7 years, 1 month ago) by mmaechler
use R_SVN_REVISION (instead of less precise R_VERSION)

Revision 2847 - Directory Listing
Modified Thu Oct 18 22:59:33 2012 UTC (7 years, 1 month ago) by mmaechler
fix determinant(update()) example : factor 2 !!

Revision 2846 - Directory Listing
Modified Thu Oct 18 22:08:32 2012 UTC (7 years, 1 month ago) by mmaechler
declare La_norm_type / La_rcond_type

Revision 2845 - Directory Listing
Modified Tue Oct 16 07:01:14 2012 UTC (7 years, 1 month ago) by mmaechler
update (before release)

Revision 2844 - Directory Listing
Modified Tue Oct 16 06:53:20 2012 UTC (7 years, 1 month ago) by mmaechler
update: methods' "Note"s changed slightly

Revision 2843 - Directory Listing
Modified Mon Oct 15 16:15:05 2012 UTC (7 years, 1 month ago) by mmaechler
using .External(Mmatrix, ...) instead of .Internal(matrix(...))

Revision 2842 - Directory Listing
Modified Fri Oct 12 17:32:33 2012 UTC (7 years, 1 month ago) by mmaechler
+ ByteCompile: yes {as it is 'recommended'}

Revision 2841 - Directory Listing
Modified Fri Oct 5 23:42:48 2012 UTC (7 years, 1 month ago) by mmaechler
man "toeplitz" entry for "old R" versions

Revision 2840 - Directory Listing
Modified Fri Oct 5 22:18:37 2012 UTC (7 years, 1 month ago) by mmaechler
.sparseDiagonal() & solve() tweaks (which were not really necessary, but should slightly speed up

Revision 2839 - Directory Listing
Modified Mon Oct 1 14:04:10 2012 UTC (7 years, 1 month ago) by mmaechler
final (R 2.15.2) de-translations from Detlef

Revision 2838 - Directory Listing
Modified Mon Oct 1 14:02:58 2012 UTC (7 years, 1 month ago) by mmaechler
final (R 2.15.2) de-translations from Detlef

Revision 2837 - Directory Listing
Modified Mon Sep 10 21:46:15 2012 UTC (7 years, 2 months ago) by mmaechler
toeplitz(<sparseVector>);  more use of  paste0 ()

Revision 2836 - Directory Listing
Modified Mon Sep 10 21:44:26 2012 UTC (7 years, 2 months ago) by mmaechler
translation updates (after new "de" from Detlef)

Revision 2835 - Directory Listing
Modified Wed Sep 5 08:59:22 2012 UTC (7 years, 2 months ago) by mmaechler
use attr<- instead of  .Call("R_set_slot", .. PACKAGE="methods")

Revision 2834 - Directory Listing
Modified Mon Sep 3 10:30:03 2012 UTC (7 years, 2 months ago) by mmaechler
fix a "too early UNPROTECT()" from Andrew Runnalls

Revision 2833 - Directory Listing
Modified Mon Sep 3 07:34:21 2012 UTC (7 years, 2 months ago) by mmaechler
allow writeMM("~/...")

Revision 2832 - Directory Listing
Modified Sat Sep 1 22:10:51 2012 UTC (7 years, 2 months ago) by mmaechler
fix "sparseMatrix" / "numeric"  inefficiency; new sparseVector() constructor

Revision 2831 - Directory Listing
Modified Sat Sep 1 14:28:35 2012 UTC (7 years, 2 months ago) by mmaechler
add rSparseMatrix() to example

Revision 2830 - Directory Listing
Modified Fri Aug 31 23:31:32 2012 UTC (7 years, 2 months ago) by mmaechler
try disabling SparseSuite_time() "timer" by defining NTIMER

Revision 2829 - Directory Listing
Modified Mon Aug 27 13:50:18 2012 UTC (7 years, 2 months ago) by mmaechler
allow solve(<matrix>) to keep list(NULL,NULL) dimnames

Revision 2828 - Directory Listing
Modified Sat Aug 25 19:52:16 2012 UTC (7 years, 2 months ago) by mmaechler
CRAN policy compatible maintainer

Revision 2827 - Directory Listing
Modified Sat Aug 25 19:46:23 2012 UTC (7 years, 2 months ago) by mmaechler
need name in 'Maintainer'

Revision 2826 - Directory Listing
Modified Sat Aug 25 19:42:13 2012 UTC (7 years, 2 months ago) by mmaechler
Polish  translation updates

Revision 2825 - Directory Listing
Modified Sat Aug 25 19:37:12 2012 UTC (7 years, 2 months ago) by mmaechler
CRAN policy compatible maintainer

Revision 2824 - Directory Listing
Modified Tue Aug 21 21:01:17 2012 UTC (7 years, 3 months ago) by mmaechler
also add  inst/po/pl (polish), plus updates; see r2823

Revision 2823 - Directory Listing
Modified Tue Aug 21 20:43:09 2012 UTC (7 years, 3 months ago) by mmaechler
add polish translation from Lukasz; and update

Revision 2822 - Directory Listing
Modified Tue Aug 21 20:42:19 2012 UTC (7 years, 3 months ago) by mmaechler
stop() messages made translatable

Revision 2821 - Directory Listing
Modified Mon Aug 20 15:19:36 2012 UTC (7 years, 3 months ago) by mmaechler
small de updates (by me)

Revision 2820 - Directory Listing
Modified Mon Aug 20 14:06:23 2012 UTC (7 years, 3 months ago) by mmaechler
make arithmetic (and "Ops") considerably more efficient for large diagonal matrices {thanks to a report by Harold Doran}

Revision 2819 - Directory Listing
Modified Thu Aug 16 08:51:47 2012 UTC (7 years, 3 months ago) by mmaechler
Version 1.0-9 - for release

Revision 2818 - Directory Listing
Modified Sat Aug 11 23:42:49 2012 UTC (7 years, 3 months ago) by mmaechler
fix "Summary" methods, and nnzero() for "non-uniqueT" matrices

Revision 2817 - Directory Listing
Modified Sat Aug 11 23:41:46 2012 UTC (7 years, 3 months ago) by mmaechler
forceSymmetric(<non-square>) gives easier error msg

Revision 2816 - Directory Listing
Modified Tue Jul 24 22:21:35 2012 UTC (7 years, 3 months ago) by mmaechler
add doExtras definition to test-tools; use in
 indexing.R, dpo-test.R and Class+Meth.R

Revision 2815 - Directory Listing
Modified Tue Jul 24 16:05:17 2012 UTC (7 years, 4 months ago) by mmaechler
+ \alias{}

Revision 2814 - Directory Listing
Modified Tue Jul 24 14:02:28 2012 UTC (7 years, 4 months ago) by mmaechler
more Ops are checked and work; new is.finite() and is.infinite() methods (+ checks for them)

Revision 2813 - Directory Listing
Modified Wed Jul 18 16:02:38 2012 UTC (7 years, 4 months ago) by mmaechler
check considerably more "Ops" - and fix, notably for "diagonalMatrix"

Revision 2812 - Directory Listing
Modified Mon Jul 16 16:04:26 2012 UTC (7 years, 4 months ago) by mmaechler
update

Revision 2811 - Directory Listing
Modified Mon Jul 16 15:50:31 2012 UTC (7 years, 4 months ago) by mmaechler
denseMatrix methods for  'diag<-' which preserve (uni)triangularity, symmetry,
etc and are fast via C *_setDiag() functions.
Further, more Ops, e.g. preserving symmetry for  <symmetric> o <diagonal>

Revision 2810 - Directory Listing
Modified Tue Jul 3 16:40:15 2012 UTC (7 years, 4 months ago) by mmaechler
revert 2809 - it`s a bug in that version of R

Revision 2809 - Directory Listing
Modified Mon Jul 2 17:15:44 2012 UTC (7 years, 4 months ago) by dmbates
By-pass test failure under R-devel on Ubuntu 12.04 amd64

Revision 2808 - Directory Listing
Modified Sat Jun 30 17:37:31 2012 UTC (7 years, 4 months ago) by mmaechler
typesetting improvements from Rodney Sparapani

Revision 2807 - Directory Listing
Modified Sat Jun 30 17:28:42 2012 UTC (7 years, 4 months ago) by mmaechler
new pack(); more unpack() methods

Revision 2806 - Directory Listing
Modified Sat Jun 30 17:27:38 2012 UTC (7 years, 4 months ago) by mmaechler
Many  <op>  now preserve  symmetric and triangular  matrices

Revision 2805 - Directory Listing
Modified Sat Jun 30 17:25:45 2012 UTC (7 years, 4 months ago) by mmaechler
more as(.,.) methods keep dimnames

Revision 2804 - Directory Listing
Modified Thu Jun 28 13:45:01 2012 UTC (7 years, 4 months ago) by dmbates
Patch for problem with definition of strdup.

Revision 2803 - Directory Listing
Modified Tue Jun 26 20:13:08 2012 UTC (7 years, 4 months ago) by dmbates
More tweaking Makefiles, etc.  This version will install on my system.

Revision 2802 - Directory Listing
Modified Tue Jun 26 18:38:59 2012 UTC (7 years, 4 months ago) by dmbates
Stay with the old organization

Revision 2801 - Directory Listing
Modified Tue Jun 26 17:55:43 2012 UTC (7 years, 4 months ago) by dmbates
Rename inst/doc/UFsparse to inst/doc/SuiteSparse

Revision 2800 - Directory Listing
Modified Mon Jun 25 07:32:50 2012 UTC (7 years, 4 months ago) by mmaechler
validity for "corMatrix" {failed when sd was NA; happened in lme4 non-convergence}

Revision 2799 - Directory Listing
Modified Wed Jun 20 17:35:50 2012 UTC (7 years, 5 months ago) by dmbates
Remove src/UFconfig directory

Revision 2798 - Directory Listing
Modified Wed Jun 20 17:17:57 2012 UTC (7 years, 5 months ago) by dmbates
SuiteSparse-4.0.0 (not yet compiling)

Revision 2797 - Directory Listing
Modified Wed Jun 20 15:31:41 2012 UTC (7 years, 5 months ago) by dmbates
Adjust script to location in Matrix/src/scripts

Revision 2796 - Directory Listing
Modified Tue Jun 19 22:32:37 2012 UTC (7 years, 5 months ago) by dmbates


Revision 2795 - Directory Listing
Modified Tue Jun 19 22:29:52 2012 UTC (7 years, 5 months ago) by dmbates
Create AMD/Lib

Revision 2794 - Directory Listing
Modified Tue Jun 19 22:27:37 2012 UTC (7 years, 5 months ago) by dmbates
Rename UFconfig to SuiteSparse_config

Revision 2793 - Directory Listing
Modified Tue Jun 19 22:25:35 2012 UTC (7 years, 5 months ago) by dmbates
Rename UFconfig to SuiteSparse_config

Revision 2792 - Directory Listing
Modified Tue Jun 19 22:23:32 2012 UTC (7 years, 5 months ago) by dmbates
Rename UFconfig to SuiteSparse_config, create AMD/Lib directory

Revision 2791 - Directory Listing
Modified Tue Jun 19 21:33:40 2012 UTC (7 years, 5 months ago) by dmbates
Modifications to scripts for SuiteSparse (not yet complete)

Revision 2790 - Directory Listing
Modified Tue Jun 19 19:39:30 2012 UTC (7 years, 5 months ago) by dmbates
CSparse from SuiteSparse 4.0.0 and modifications to scripts for this version.

Revision 2789 - Directory Listing
Modified Tue Jun 19 16:20:32 2012 UTC (7 years, 5 months ago) by mmaechler
update(<Cholesky>, non-symmetric) restored to previous behavior; more docu and tests

Revision 2788 - Directory Listing
Modified Wed Jun 13 19:05:16 2012 UTC (7 years, 5 months ago) by mmaechler
make use of the increased "smartness" of dgeMatrix_matrix_crossprod()

Revision 2787 - Directory Listing
Modified Wed Jun 13 12:26:13 2012 UTC (7 years, 5 months ago) by mmaechler
ensure dimnames are kept in %*% and [t]crossprod() in all (?) cases.

Revision 2786 - Directory Listing
Modified Wed Jun 13 12:11:37 2012 UTC (7 years, 5 months ago) by mmaechler
remove "old" R_VERSION dependencies

Revision 2785 - Directory Listing
Modified Fri Jun 8 19:33:35 2012 UTC (7 years, 5 months ago) by mmaechler
date (prepare "build")

Revision 2784 - Directory Listing
Modified Fri Jun 8 17:01:25 2012 UTC (7 years, 5 months ago) by mmaechler
update(Cholesky(.), <dgCMatrix>) now warns and coerces;
many small comments and some more docu for Cholesky() and update(); --> TODO

Revision 2783 - Directory Listing
Modified Wed Jun 6 06:53:52 2012 UTC (7 years, 5 months ago) by mmaechler
More docs/examples on chol()/Cholesky()
 new chk.s() "check dots" utility

Revision 2782 - Directory Listing
Modified Tue May 15 21:59:58 2012 UTC (7 years, 6 months ago) by dmbates
Spurious characters in a comment.  No harm, no foul but still clean up.

Revision 2781 - Directory Listing
Modified Tue Apr 24 16:33:29 2012 UTC (7 years, 6 months ago) by mmaechler
updated \alias{updown, *}

Revision 2780 - Directory Listing
Modified Wed Apr 18 12:20:47 2012 UTC (7 years, 7 months ago) by mmaechler
new  updown() [interface to CHOLMOD_updown] for up-/down-dating a Cholesky decomposition

Revision 2779 - Directory Listing
Modified Mon Apr 16 19:18:40 2012 UTC (7 years, 7 months ago) by mmaechler
add test for  symmetric=TRUE  &  uplo = "L"  case

Revision 2778 - Directory Listing
Modified Mon Apr 16 19:04:10 2012 UTC (7 years, 7 months ago) by mmaechler
more use of paste0()

Revision 2777 - Directory Listing
Modified Mon Apr 16 19:01:52 2012 UTC (7 years, 7 months ago) by mmaechler
fix the sparseMatrix(*, symmetric=TRUE) bug that Terry found

Revision 2776 - Directory Listing
Modified Fri Mar 30 16:38:10 2012 UTC (7 years, 7 months ago) by mmaechler
PROTECT()++ thanks to Andrew Runnalls

Revision 2775 - Directory Listing
Modified Fri Mar 16 07:40:54 2012 UTC (7 years, 8 months ago) by mmaechler
version requiring  R >= 2.15.0

Revision 2773 - Directory Listing
Modified Thu Mar 15 14:24:52 2012 UTC (7 years, 8 months ago) by mmaechler
made sparse2int.R()  recursion-free which helps only little for sparse.model.matrix() high-interaction factors

Revision 2772 - Directory Listing
Modified Wed Mar 7 13:47:37 2012 UTC (7 years, 8 months ago) by mmaechler
add missing PROTECT in  Csparse_diagN2U()

Revision 2771 - Directory Listing
Modified Tue Mar 6 16:06:10 2012 UTC (7 years, 8 months ago) by mmaechler
translation updates

Revision 2770 - Directory Listing
Modified Mon Mar 5 13:41:23 2012 UTC (7 years, 8 months ago) by mmaechler
fix solve(<dtCMatrix>) seg.fault by using Calloc() instead of Alloca() .. hmm

Revision 2769 - Directory Listing
Modified Sat Mar 3 15:30:26 2012 UTC (7 years, 8 months ago) by mmaechler
sparse.model.matrix(*, verbose) {and cleanup of old stuff}

Revision 2768 - Directory Listing
Modified Mon Feb 27 22:47:08 2012 UTC (7 years, 8 months ago) by mmaechler
leftover

Revision 2767 - Directory Listing
Modified Mon Feb 27 22:20:34 2012 UTC (7 years, 8 months ago) by mmaechler
<sparseMatrix> o <numeric> fixed Florent`s bug

Revision 2766 - Directory Listing
Modified Fri Feb 24 23:54:44 2012 UTC (7 years, 8 months ago) by mmaechler
plug memory leak (only in error case!) reported by Kasper Kristensen

Revision 2765 - Directory Listing
Modified Tue Feb 21 17:30:39 2012 UTC (7 years, 9 months ago) by mmaechler
mini cleanup before release

Revision 2764 - Directory Listing
Modified Fri Feb 17 19:58:29 2012 UTC (7 years, 9 months ago) by mmaechler
fix  -Diagonal(3)

Revision 2763 - Directory Listing
Modified Fri Feb 3 20:07:35 2012 UTC (7 years, 9 months ago) by mmaechler
(cosmetic): testing svn / R-forge

Revision 2762 - Directory Listing
Modified Thu Jan 19 08:51:17 2012 UTC (7 years, 10 months ago) by mmaechler
regression test for the fix in r2759

Revision 2761 - Directory Listing
Modified Thu Jan 19 08:50:44 2012 UTC (7 years, 10 months ago) by mmaechler
r2760 was too much: had <Rversion.h> already since 2746

Revision 2760 - Directory Listing
Modified Wed Jan 18 19:50:57 2012 UTC (7 years, 10 months ago) by dmbates
Rversion.h needed for Matrix_stubs while keying on version numbers

Revision 2759 - Directory Listing
Modified Wed Jan 18 19:47:32 2012 UTC (7 years, 10 months ago) by dmbates
Correct the calculation of nonzero indices for row-major sparse matrices.

Revision 2758 - Directory Listing
Modified Sat Jan 14 21:47:55 2012 UTC (7 years, 10 months ago) by mmaechler
update .Rbuildignore and add .Rinstignore

Revision 2757 - Directory Listing
Modified Fri Jan 13 11:57:51 2012 UTC (7 years, 10 months ago) by mmaechler
finally got rid of remaining printf(); and updated patch files/scripts

Revision 2756 - Directory Listing
Modified Fri Jan 13 10:40:13 2012 UTC (7 years, 10 months ago) by mmaechler
revert 2751 (Rprintf) - will solve via cs.h

Revision 2755 - Directory Listing
Modified Fri Jan 13 09:38:48 2012 UTC (7 years, 10 months ago) by mmaechler
rm

Revision 2754 - Directory Listing
Modified Fri Jan 13 09:37:01 2012 UTC (7 years, 10 months ago) by mmaechler
make printf() be Rprintf()

Revision 2753 - Directory Listing
Modified Fri Jan 13 09:16:12 2012 UTC (7 years, 10 months ago) by mmaechler
disable printf() for AMD

Revision 2752 - Directory Listing
Modified Fri Jan 13 08:55:27 2012 UTC (7 years, 10 months ago) by mmaechler
use Rprintf, not printf

Revision 2751 - Directory Listing
Modified Fri Jan 13 08:55:12 2012 UTC (7 years, 10 months ago) by mmaechler
use Rprintf, not printf

Revision 2750 - Directory Listing
Modified Thu Jan 12 15:11:09 2012 UTC (7 years, 10 months ago) by mmaechler
get rid of "maybe getCall()" and hence require R >= 2.14.0

Revision 2749 - Directory Listing
Modified Thu Jan 12 15:02:34 2012 UTC (7 years, 10 months ago) by mmaechler
releasing 1.0-3

Revision 2748 - Directory Listing
Modified Thu Jan 12 14:05:11 2012 UTC (7 years, 10 months ago) by mmaechler
we use one MASS data set in one vignette

Revision 2747 - Directory Listing
Modified Thu Jan 12 14:03:54 2012 UTC (7 years, 10 months ago) by mmaechler
work around latest R CMD check false positive warning

Revision 2746 - Directory Listing
Modified Thu Jan 12 11:57:48 2012 UTC (7 years, 10 months ago) by mmaechler
need Rversion.h  when checking for R_VERSION etc

Revision 2745 - Directory Listing
Modified Sat Dec 31 21:11:48 2011 UTC (7 years, 10 months ago) by mmaechler
also import cbind2, rbind2

Revision 2744 - Directory Listing
Modified Fri Dec 30 18:51:18 2011 UTC (7 years, 10 months ago) by mmaechler
Matrix_check_class_etc() has been in R-devel for a while now;
NAMESPACE imports for border line situation

Revision 2743 - Directory Listing
Modified Fri Dec 30 16:46:38 2011 UTC (7 years, 10 months ago) by mmaechler
+ relErrV():  a vectorized (component-wise) relative error

Revision 2742 - Directory Listing
Modified Thu Dec 15 22:14:05 2011 UTC (7 years, 11 months ago) by mmaechler
paste0() is in R >= 2.15.0

Revision 2741 - Directory Listing
Modified Fri Dec 9 10:38:51 2011 UTC (7 years, 11 months ago) by mmaechler
.bdiag(<all "lMatrix">) now works too

Revision 2740 - Directory Listing
Modified Fri Dec 9 10:37:08 2011 UTC (7 years, 11 months ago) by mmaechler
use new base::paste0 when it's available

Revision 2739 - Directory Listing
Modified Sat Nov 19 22:55:40 2011 UTC (8 years ago) by mmaechler
skip other test in other-pkts.R; cosmetic

Revision 2738 - Directory Listing
Modified Fri Nov 4 21:37:07 2011 UTC (8 years ago) by mmaechler
no longer assignInNamespace when R >= 2.15.0

Revision 2737 - Directory Listing
Modified Sun Oct 30 20:32:57 2011 UTC (8 years ago) by mmaechler
workaround some "CRAN check errors" (Mac Encoding / Solaris seg.fault with SparseM)

Revision 2736 - Directory Listing
Modified Sat Oct 22 21:41:13 2011 UTC (8 years, 1 month ago) by mmaechler
add  qr.qt?y(<sparseQR>, <sparseMatrix>) methods for Terry

Revision 2735 - Directory Listing
Modified Sat Oct 22 20:29:27 2011 UTC (8 years, 1 month ago) by mmaechler
rankMatrix(x, "qr..") for sparse -- part 2

Revision 2734 - Directory Listing
Modified Sat Oct 22 20:07:02 2011 UTC (8 years, 1 month ago) by mmaechler
rankMatrix(x, "qr..") for sparse  x

Revision 2733 - Directory Listing
Modified Sat Oct 22 19:54:53 2011 UTC (8 years, 1 month ago) by mmaechler
mention options("Matrix.quiet" = TRUE) for qr.R()

Revision 2732 - Directory Listing
Modified Tue Oct 18 05:57:10 2011 UTC (8 years, 1 month ago) by mmaechler
ready for CRAN release

Revision 2731 - Directory Listing
Modified Mon Oct 17 18:07:09 2011 UTC (8 years, 1 month ago) by dmbates
Free the general copy of a symmetric argument to Csparse_submatrix

Revision 2730 - Directory Listing
Modified Fri Oct 14 19:59:47 2011 UTC (8 years, 1 month ago) by mmaechler
translation updates: part 2 - after running "update-me.sh"

Revision 2729 - Directory Listing
Modified Fri Oct 14 16:25:51 2011 UTC (8 years, 1 month ago) by mmaechler
new German translation - thanks to Detlef Steuer

Revision 2728 - Directory Listing
Modified Tue Oct 11 09:38:05 2011 UTC (8 years, 1 month ago) by mmaechler
modularize test-tools into two parts - back compatibly

Revision 2727 - Directory Listing
Modified Sat Oct 8 20:38:57 2011 UTC (8 years, 1 month ago) by mmaechler
update

Revision 2726 - Directory Listing
Modified Sat Oct 8 20:16:07 2011 UTC (8 years, 1 month ago) by mmaechler
typo

Revision 2725 - Directory Listing
Modified Sat Oct 8 19:48:44 2011 UTC (8 years, 1 month ago) by mmaechler
cbind2() and rbind2() methods for the mix of sparse & dense

Revision 2724 - Directory Listing
Modified Sat Oct 8 13:48:54 2011 UTC (8 years, 1 month ago) by mmaechler
drop pre-R-2.12.0 code

Revision 2723 - Directory Listing
Modified Fri Oct 7 12:41:20 2011 UTC (8 years, 1 month ago) by mmaechler
as_cholmod_triplet should also be callable - filling the quartet

Revision 2722 - Directory Listing
Modified Thu Oct 6 15:52:30 2011 UTC (8 years, 1 month ago) by mmaechler
doxygen "fixes"

Revision 2721 - Directory Listing
Modified Thu Oct 6 12:59:16 2011 UTC (8 years, 1 month ago) by mmaechler
after "doxygen -u" and "doxygen" and cleanup of www directory

Revision 2718 - Directory Listing
Modified Thu Oct 6 09:45:17 2011 UTC (8 years, 1 month ago) by mmaechler
after "doxygen -u", adding -*-sh-*-, and trying an svn-automated PROJECT_NUMBER

Revision 2717 - Directory Listing
Modified Tue Oct 4 08:01:18 2011 UTC (8 years, 1 month ago) by mmaechler
ready for 1.0-0

Revision 2716 - Directory Listing
Modified Thu Sep 29 10:37:52 2011 UTC (8 years, 1 month ago) by mmaechler
update headers --- helped by  "gcc ... -Wno-prototypes"

Revision 2715 - Directory Listing
Modified Tue Sep 27 14:56:52 2011 UTC (8 years, 1 month ago) by mmaechler
Matrix.h and *_stubs.c mismatch -- detected by Henrik Friberg

Revision 2714 - Directory Listing
Modified Tue Sep 27 14:55:52 2011 UTC (8 years, 1 month ago) by mmaechler
improved error msgs

Revision 2713 - Directory Listing
Modified Sat Sep 17 10:17:24 2011 UTC (8 years, 2 months ago) by mmaechler
make Matrix_check_class_etc callable from other packages C code

Revision 2712 - Directory Listing
Modified Sat Sep 17 09:56:13 2011 UTC (8 years, 2 months ago) by mmaechler
solve(<dsC>) -- now use LU if cholmod LDL failed

Revision 2711 - Directory Listing
Modified Sat Sep 17 09:34:27 2011 UTC (8 years, 2 months ago) by mmaechler
update (condest; Bunch-Kaufman)

Revision 2710 - Directory Listing
Modified Fri Sep 16 14:42:36 2011 UTC (8 years, 2 months ago) by mmaechler
define NPRINT -- so CHOLMOD should not print (to STDERR, etc) anymore.
after all, our error handler should get things

Revision 2709 - Directory Listing
Modified Thu Sep 15 20:37:56 2011 UTC (8 years, 2 months ago) by mmaechler
chol(<Tsparse>) fix

Revision 2708 - Directory Listing
Modified Thu Sep 15 10:07:32 2011 UTC (8 years, 2 months ago) by mmaechler
bandSparse(*, giveCsparse=TRUE) - option to return Tsparse, ditto for sparseMatrix()

Revision 2707 - Directory Listing
Modified Sat Sep 3 14:51:03 2011 UTC (8 years, 2 months ago) by mmaechler
get rid of "set but unused" warnings from gcc 4.6.0

Revision 2706 - Directory Listing
Modified Sat Sep 3 14:50:15 2011 UTC (8 years, 2 months ago) by mmaechler
people should see the "expm" package when using expm()

Revision 2705 - Directory Listing
Modified Fri Sep 2 21:32:09 2011 UTC (8 years, 2 months ago) by mmaechler
update() and getCall() import/export for R < / >= 2.14

Revision 2704 - Directory Listing
Modified Fri Aug 19 13:48:46 2011 UTC (8 years, 3 months ago) by mmaechler
only declare and export getCall() if (R version  < 2.14)

Revision 2703 - Directory Listing
Modified Fri Aug 19 07:38:39 2011 UTC (8 years, 3 months ago) by mmaechler
forgotten \alias  + note

Revision 2702 - Directory Listing
Modified Wed Aug 17 16:28:54 2011 UTC (8 years, 3 months ago) by mmaechler
export diagU2N() and diagN2U()

Revision 2701 - Directory Listing
Modified Sat Aug 13 12:52:48 2011 UTC (8 years, 3 months ago) by mmaechler
update before release

Revision 2700 - Directory Listing
Modified Fri Aug 12 20:53:54 2011 UTC (8 years, 3 months ago) by mmaechler
change the last (of three) instances where  REAL |-> LOGICAL 
hadn't been careful about NaN |-> NA
-- as in r2556 (by Brian Ripley -- triggered on Sparc Solaris)

Revision 2699 - Directory Listing
Modified Thu Aug 11 15:12:31 2011 UTC (8 years, 3 months ago) by mmaechler
Version -> *-3

Revision 2697 - Directory Listing
Modified Thu Aug 11 08:13:34 2011 UTC (8 years, 3 months ago) by mmaechler
importFrom(method, *) :  + coerce, show  
-- the latter necessary for  loadNamespace(epoc)  when methods is not loaded.

Revision 2696 - Directory Listing
Modified Wed Aug 10 15:41:35 2011 UTC (8 years, 3 months ago) by mmaechler
add URL

Revision 2695 - Directory Listing
Modified Tue Aug 9 19:43:57 2011 UTC (8 years, 3 months ago) by mmaechler
make sure assignInNamspace is "there"

Revision 2694 - Directory Listing
Modified Tue Aug 9 15:09:14 2011 UTC (8 years, 3 months ago) by mmaechler
rm .onLoad() - never used as shadowed by the one in zzz.R

Revision 2693 - Directory Listing
Modified Tue Aug 9 14:16:28 2011 UTC (8 years, 3 months ago) by mmaechler
do not use GNU-make-isms in Makefile

Revision 2692 - Directory Listing
Modified Mon Aug 8 18:38:02 2011 UTC (8 years, 3 months ago) by mmaechler
update+comments

Revision 2691 - Directory Listing
Modified Mon Aug 8 08:56:24 2011 UTC (8 years, 3 months ago) by mmaechler
replace s/FIXME/"FIXME"/

Revision 2690 - Directory Listing
Modified Mon Aug 8 08:02:16 2011 UTC (8 years, 3 months ago) by mmaechler
2nd part of "r2689" - translation DB update

Revision 2689 - Directory Listing
Modified Sat Aug 6 15:36:03 2011 UTC (8 years, 3 months ago) by mmaechler
update via 'update-me.sh'

Revision 2688 - Directory Listing
Modified Sat Aug 6 15:33:33 2011 UTC (8 years, 3 months ago) by mmaechler
 "[<-" : now also replTmat calls into Csparse_subassign for large replacement region

Revision 2687 - Directory Listing
Modified Sat Aug 6 13:24:21 2011 UTC (8 years, 3 months ago) by mmaechler
add sessionInfo() and more

Revision 2686 - Directory Listing
Modified Fri Aug 5 21:09:48 2011 UTC (8 years, 3 months ago) by mmaechler
add head(<sparseVector>, n) and tail(..) and use it, removing two FIXME`s

Revision 2685 - Directory Listing
Modified Fri Aug 5 19:52:10 2011 UTC (8 years, 3 months ago) by mmaechler
mv inclusion of <stdint.h> to Mutils.h, so it is also seen from t_sparseVector.c

Revision 2684 - Directory Listing
Modified Fri Aug 5 15:17:26 2011 UTC (8 years, 3 months ago) by mmaechler
<Csparse>[..] <- val   now goes via .Call()

Revision 2683 - Directory Listing
Modified Fri Aug 5 09:49:49 2011 UTC (8 years, 3 months ago) by mmaechler
modularize sublibs {in order to shortcut 2-platform development}

Revision 2682 - Directory Listing
Modified Thu Aug 4 10:28:21 2011 UTC (8 years, 3 months ago) by mmaechler
typo

Revision 2681 - Directory Listing
Modified Mon Aug 1 20:43:16 2011 UTC (8 years, 3 months ago) by mmaechler
Csparse_subassign() now also for dtCMatrix

Revision 2680 - Directory Listing
Modified Fri Jul 29 14:34:57 2011 UTC (8 years, 3 months ago) by mmaechler
support 'useRaster' argument for image() methods

Revision 2679 - Directory Listing
Modified Wed Jul 27 17:27:12 2011 UTC (8 years, 3 months ago) by mmaechler
nearPD(*, ensureSymmetry) - allowing a small speedup

Revision 2678 - Directory Listing
Modified Sat Jun 25 19:19:19 2011 UTC (8 years, 4 months ago) by mmaechler
finish: functionality of sparseVector.c now as "R_INLINE" in Mutils.h

Revision 2677 - Directory Listing
Modified Sat Jun 25 19:18:12 2011 UTC (8 years, 4 months ago) by mmaechler
finally a working C level Csparse_subassign() - to solve the memory-explode issue .. *BUT* it`s still too slow, even if I never remove but use drop0(.) in the end ... commit now before South America ... in case I get hit by a truck :-)

Revision 2676 - Directory Listing
Modified Sat Jun 25 19:14:05 2011 UTC (8 years, 4 months ago) by mmaechler
define S3 methods for as.array(), as.matrix() & as.vector()  *instead* of writing into base NS

Revision 2675 - Directory Listing
Modified Sat Jun 11 15:11:24 2011 UTC (8 years, 5 months ago) by mmaechler
note about using summary() {and write.table()}
for a simplistic  triplet export

Revision 2674 - Directory Listing
Modified Fri Jun 10 21:56:20 2011 UTC (8 years, 5 months ago) by mmaechler
fix <non-constant-Diagonal> %*% <dsCMatrix>

Revision 2673 - Directory Listing
Modified Fri May 20 16:19:18 2011 UTC (8 years, 6 months ago) by mmaechler
fix det(Matrix(0,1)) bug \\ misc.

Revision 2672 - Directory Listing
Modified Fri May 20 16:18:25 2011 UTC (8 years, 6 months ago) by mmaechler
"rationalize"/improve description of p slot

Revision 2671 - Directory Listing
Modified Fri May 20 16:17:58 2011 UTC (8 years, 6 months ago) by mmaechler
sparseMatrix(*, symmetric)

Revision 2670 - Directory Listing
Modified Tue Apr 19 09:58:13 2011 UTC (8 years, 7 months ago) by mmaechler
aargh.. strip.white=true -- correct

Revision 2669 - Directory Listing
Modified Tue Apr 19 07:20:49 2011 UTC (8 years, 7 months ago) by mmaechler
Sweave strip.white="true" -- R 2.14 compatibly correct

Revision 2667 - Directory Listing
Modified Fri Apr 8 15:40:47 2011 UTC (8 years, 7 months ago) by mmaechler
do not even test the "SparseM" example (aargh)

Revision 2666 - Directory Listing
Modified Thu Apr 7 14:06:32 2011 UTC (8 years, 7 months ago) by mmaechler
update the "UFsparse_download.sh" script; need new SparseM for example

Revision 2665 - Directory Listing
Modified Thu Apr 7 09:46:29 2011 UTC (8 years, 7 months ago) by mmaechler
'SparseM' (0.87) now has its data in a different place

Revision 2664 - Directory Listing
Modified Wed Apr 6 17:24:46 2011 UTC (8 years, 7 months ago) by dmbates
Change calls to cholmod_l_foo into calls to cholmod_foo

Revision 2663 - Directory Listing
Modified Wed Apr 6 07:03:09 2011 UTC (8 years, 7 months ago) by mmaechler
sparseVector subsetting in C (not yet used)

Revision 2662 - Directory Listing
Modified Wed Apr 6 07:01:41 2011 UTC (8 years, 7 months ago) by mmaechler
added sparseVector.o  target

Revision 2661 - Directory Listing
Modified Wed Apr 6 06:55:54 2011 UTC (8 years, 7 months ago) by mmaechler
use standard UFlong (instead of UFlong := int hack); updated CHOLMOD/SparseSuite Jan. -- version 0.9996875-0

Revision 2660 - Directory Listing
Modified Wed Apr 6 06:53:23 2011 UTC (8 years, 7 months ago) by mmaechler
cut & paste from different ../src/CHOLMOD/Include/ parts (and save the "Link")

Revision 2658 - Directory Listing
Modified Wed Mar 30 14:31:36 2011 UTC (8 years, 7 months ago) by dmbates
Install symbols before using them in defineVar.

Revision 2656 - Directory Listing
Modified Thu Mar 17 09:51:27 2011 UTC (8 years, 8 months ago) by mmaechler
work around current Sweave-keep.source=TRUE bug

Revision 2655 - Directory Listing
Modified Thu Feb 24 07:55:11 2011 UTC (8 years, 8 months ago) by mmaechler
newest versions of CHOLMOD ..

Revision 2654 - Directory Listing
Modified Thu Feb 24 07:47:52 2011 UTC (8 years, 8 months ago) by mmaechler
get newest versions of CHOLMOD etc from Tim Davis` site

Revision 2653 - Directory Listing
Modified Wed Feb 23 14:44:37 2011 UTC (8 years, 9 months ago) by mmaechler
expand(lu(<non-square dense>)) now works

Revision 2652 - Directory Listing
Modified Wed Feb 23 14:03:33 2011 UTC (8 years, 9 months ago) by mmaechler
simple solve(Pmatrix, A) methods

Revision 2651 - Directory Listing
Modified Wed Feb 23 14:02:32 2011 UTC (8 years, 9 months ago) by mmaechler
reset "factors" slot in t()

Revision 2650 - Directory Listing
Modified Mon Feb 21 10:57:56 2011 UTC (8 years, 9 months ago) by mmaechler
fix bug in  M[i,j] <- v for cases with *repeated* entries in j

Revision 2649 - Directory Listing
Modified Mon Feb 21 10:57:55 2011 UTC (8 years, 9 months ago) by mmaechler
add S4_2list()

Revision 2648 - Directory Listing
Modified Mon Feb 21 10:57:53 2011 UTC (8 years, 9 months ago) by mmaechler
sparseVector now with *sorted* i-slot

Revision 2647 - Directory Listing
Modified Mon Feb 21 10:57:51 2011 UTC (8 years, 9 months ago) by mmaechler
remainder of using "const" for valid[] ..

Revision 2646 - Directory Listing
Modified Mon Feb 21 10:57:49 2011 UTC (8 years, 9 months ago) by mmaechler
use "(static) const char*" for the valid[] strings in Matrix_check_class_*()

Revision 2645 - Directory Listing
Modified Mon Feb 21 10:57:47 2011 UTC (8 years, 9 months ago) by mmaechler
R >= 2.10.0: ==> no longer needing Matrix_make_named(); R >= 2.13.0 will have R_check_class_and_super()

Revision 2644 - Directory Listing
Modified Mon Feb 21 10:57:45 2011 UTC (8 years, 9 months ago) by mmaechler
print/format sparse Matrix: fix align="right" and improve docu

Revision 2643 - Directory Listing
Modified Thu Feb 17 21:13:26 2011 UTC (8 years, 9 months ago) by dmbates
*** empty log message ***

Revision 2642 - Directory Listing
Modified Thu Feb 17 21:13:07 2011 UTC (8 years, 9 months ago) by dmbates
*** empty log message ***

Revision 2641 - Directory Listing
Modified Thu Feb 17 20:25:29 2011 UTC (8 years, 9 months ago) by dmbates
Remove Encoding: directive.

Revision 2640 - Directory Listing
Modified Thu Feb 17 20:25:14 2011 UTC (8 years, 9 months ago) by dmbates
Remove Encoding: directive.

Revision 2639 - Directory Listing
Modified Thu Feb 10 17:41:34 2011 UTC (8 years, 9 months ago) by mmaechler
use png for large graphics (suggestion from Brian)

Revision 2638 - Directory Listing
Modified Sat Feb 5 12:19:52 2011 UTC (8 years, 9 months ago) by mmaechler
update, thanks to Spencer Graves' prompting.

Revision 2637 - Directory Listing
Modified Mon Jan 17 22:12:38 2011 UTC (8 years, 10 months ago) by dmbates
Spelling correction.

Revision 2636 - Directory Listing
Modified Fri Jan 7 07:42:12 2011 UTC (8 years, 10 months ago) by mmaechler
after 17 months, get rid of API-change warning in determinant(<CHMfactor>)

Revision 2635 - Directory Listing
Modified Tue Jan 4 16:20:50 2011 UTC (8 years, 10 months ago) by mmaechler
nearPD(): better error message for all negative E.V.

Revision 2634 - Directory Listing
Modified Sat Dec 18 16:52:33 2010 UTC (8 years, 11 months ago) by mmaechler
get rid of model.Matrix() {stub to pkg "MatrixModels"}

Revision 2633 - Directory Listing
Modified Sun Dec 12 21:23:17 2010 UTC (8 years, 11 months ago) by mmaechler
cosmetics from checkUsagePackage()

Revision 2631 - Directory Listing
Modified Sat Dec 11 19:10:21 2010 UTC (8 years, 11 months ago) by mmaechler
result of "doxygen -u"

Revision 2629 - Directory Listing
Modified Sat Dec 11 18:50:49 2010 UTC (8 years, 11 months ago) by mmaechler
as last rev: crossprod(<ngCMatrix>, <dense>);  etc

Revision 2628 - Directory Listing
Modified Sat Dec 11 16:56:51 2010 UTC (8 years, 11 months ago) by mmaechler
fix <ngCMatrix> %*% <dense> -- providing fast C-based coercions

Revision 2627 - Directory Listing
Modified Mon Dec 6 14:33:15 2010 UTC (8 years, 11 months ago) by mmaechler
Matrix(): adapted to new .Internal(matrix)

Revision 2626 - Directory Listing
Modified Mon Nov 29 08:17:49 2010 UTC (8 years, 11 months ago) by mmaechler
no need for triggering C++ as linker - for the time being

Revision 2625 - Directory Listing
Modified Sat Nov 27 22:33:11 2010 UTC (8 years, 11 months ago) by mmaechler
comment stopifnot() which prevents INSTALL

Revision 2624 - Directory Listing
Modified Wed Nov 10 08:05:19 2010 UTC (9 years ago) by mmaechler
update before release

Revision 2623 - Directory Listing
Modified Mon Nov 1 21:41:03 2010 UTC (9 years ago) by dmbates
*** empty log message ***

Revision 2622 - Directory Listing
Modified Mon Nov 1 21:39:14 2010 UTC (9 years ago) by dmbates
Initial attempt at using reference classes for the response modules.

Revision 2621 - Directory Listing
Modified Thu Oct 21 09:31:59 2010 UTC (9 years, 1 month ago) by mmaechler
drop "save=FALSE" from require()

Revision 2620 - Directory Listing
Modified Sat Oct 9 07:27:05 2010 UTC (9 years, 1 month ago) by mmaechler
+ graph:: 

Revision 2619 - Directory Listing
Modified Mon Sep 20 13:01:27 2010 UTC (9 years, 2 months ago) by dmbates
Remove (currently) empty inst directory.  Update DESCRIPTION date.

Revision 2618 - Directory Listing
Modified Sat Sep 11 20:49:41 2010 UTC (9 years, 2 months ago) by mmaechler
misc. (cosmetic) - preparing release

Revision 2617 - Directory Listing
Modified Tue Aug 24 21:49:09 2010 UTC (9 years, 3 months ago) by mmaechler
add 'drop.unused.levels = FALSE' as in Matrix

Revision 2616 - Directory Listing
Modified Tue Aug 24 16:15:00 2010 UTC (9 years, 3 months ago) by mmaechler
sparse.model.matrix(): drop.unused.levels = *FALSE* / printSpMatrix() using FormatSpMatrix() and that is modularized

Revision 2615 - Directory Listing
Modified Tue Aug 24 12:30:35 2010 UTC (9 years, 3 months ago) by mmaechler
m_encodeInd(ij, ..): thinko from rev. 2614

Revision 2614 - Directory Listing
Modified Tue Aug 24 10:12:37 2010 UTC (9 years, 3 months ago) by mmaechler
m_encodeInd(ij, ..): better error message for non-matrix 'ij'

Revision 2613 - Directory Listing
Modified Thu Aug 12 20:51:08 2010 UTC (9 years, 3 months ago) by mmaechler
(fix space in "..." warnings)

Revision 2612 - Directory Listing
Modified Wed Aug 11 20:33:46 2010 UTC (9 years, 3 months ago) by mmaechler
Schur(<dgCMatrix>) no works

Revision 2611 - Directory Listing
Modified Tue Aug 10 20:02:02 2010 UTC (9 years, 3 months ago) by mmaechler
eliminate pre-R-2.10.0 clauses

Revision 2610 - Directory Listing
Modified Tue Aug 10 15:10:21 2010 UTC (9 years, 3 months ago) by mmaechler
export & document .bdiag(), too

Revision 2609 - Directory Listing
Modified Tue Aug 10 08:45:59 2010 UTC (9 years, 3 months ago) by mmaechler
define resid(), fitted.values(), coefficients() ..

Revision 2608 - Directory Listing
Modified Tue Aug 10 08:23:48 2010 UTC (9 years, 3 months ago) by mmaechler
need to drop "@factors" when matrix is changed

Revision 2607 - Directory Listing
Modified Mon Aug 9 20:32:06 2010 UTC (9 years, 3 months ago) by dmbates
Modifications to reweightPred methods to accomodate ncol(sqrtXwt) > 1

Revision 2606 - Directory Listing
Modified Mon Aug 9 20:31:31 2010 UTC (9 years, 3 months ago) by dmbates
*** empty log message ***

Revision 2605 - Directory Listing
Modified Mon Aug 9 19:29:19 2010 UTC (9 years, 3 months ago) by dmbates
Document the fitted and residuals methods.

Revision 2604 - Directory Listing
Modified Mon Aug 9 18:29:35 2010 UTC (9 years, 3 months ago) by dmbates
*** empty log message ***

Revision 2603 - Directory Listing
Modified Mon Aug 9 18:29:18 2010 UTC (9 years, 3 months ago) by dmbates
"fitted" and "residuals" methods for "respModule" classes; modifications to "glpModel" methods.

Revision 2602 - Directory Listing
Modified Mon Aug 9 15:44:25 2010 UTC (9 years, 3 months ago) by mmaechler
rename reweight() to reweightPred();
 export and minimally document it; the same for  updateWts(), updateMu() & solveCoef()

Revision 2599 - Directory Listing
Modified Thu Aug 5 19:13:06 2010 UTC (9 years, 3 months ago) by mmaechler
follow package move within R-forge

Revision 2597 - Directory Listing
Modified Wed Aug 4 14:28:59 2010 UTC (9 years, 3 months ago) by dmbates
Import classes from Matrix

Revision 2596 - Directory Listing
Modified Wed Aug 4 14:28:32 2010 UTC (9 years, 3 months ago) by dmbates
Spelling mistake

Revision 2595 - Directory Listing
Modified Wed Aug 4 12:59:58 2010 UTC (9 years, 3 months ago) by dmbates
*** empty log message ***

Revision 2594 - Directory Listing
Modified Wed Aug 4 12:58:14 2010 UTC (9 years, 3 months ago) by dmbates
Fix name resolution problem exposed by example from Florent Duyme.

Revision 2593 - Directory Listing
Modified Sun Aug 1 20:21:36 2010 UTC (9 years, 3 months ago) by mmaechler
document missing parts

Revision 2592 - Directory Listing
Modified Sun Aug 1 19:51:14 2010 UTC (9 years, 3 months ago) by mmaechler
efficient x[ -i ] for sparse vectors; "Enhances" MatrixModels

Revision 2591 - Directory Listing
Modified Fri Jul 30 18:22:55 2010 UTC (9 years, 3 months ago) by mmaechler
(should not be consequential)

Revision 2590 - Directory Listing
Modified Wed Jul 28 20:21:55 2010 UTC (9 years, 3 months ago) by mmaechler
add a model.Matrix() "proxy" - for back-compatibility

Revision 2589 - Directory Listing
Modified Mon Jul 26 17:19:23 2010 UTC (9 years, 3 months ago) by mmaechler
cleanup Imports; no full, but just importsFrom()

Revision 2588 - Directory Listing
Modified Mon Jul 26 10:06:18 2010 UTC (9 years, 3 months ago) by mmaechler
new package "MatrixModels" split off Matrix - for modelMatrix(), prediction & response Modules, etc

Revision 2587 - Directory Listing
Modified Sun Jul 25 12:06:27 2010 UTC (9 years, 4 months ago) by mmaechler
typo (missing '\code')

Revision 2586 - Directory Listing
Modified Sun Jul 25 02:32:06 2010 UTC (9 years, 4 months ago) by mmaechler
move Matrix/ directory "down"

Revision 2585 - Directory Listing
Modified Sun Jul 25 02:17:49 2010 UTC (9 years, 4 months ago) by mmaechler
one more triangular o triangular

Revision 2584 - Directory Listing
Modified Sun Jul 25 01:25:18 2010 UTC (9 years, 4 months ago) by mmaechler
2nd part of 2583 [remove SPQR parts]

Revision 2583 - Directory Listing
Modified Sun Jul 25 01:11:09 2010 UTC (9 years, 4 months ago) by mmaechler
remove the SPQR parts - as we have done before "build" for a long time anyway

Revision 2582 - Directory Listing
Modified Sun Jul 25 01:05:54 2010 UTC (9 years, 4 months ago) by mmaechler
some glpModel methods -- "commit before move"

Revision 2581 - Directory Listing
Modified Sun Jul 25 01:04:07 2010 UTC (9 years, 4 months ago) by mmaechler
efficient  [triangular o triangular]

Revision 2580 - Directory Listing
Modified Fri Jul 23 13:15:41 2010 UTC (9 years, 4 months ago) by mmaechler
allow "useInv" for rcond(<sparseMatrix>)

Revision 2578 - Directory Listing
Modified Wed Jul 21 14:14:45 2010 UTC (9 years, 4 months ago) by mmaechler
typo (thanks to Thomas Rösler)

Revision 2572 - Directory Listing
Modified Sat Jul 17 16:54:41 2010 UTC (9 years, 4 months ago) by mmaechler
formula(<Model); other minor cleanup

Revision 2571 - Directory Listing
Modified Fri Jul 16 17:00:54 2010 UTC (9 years, 4 months ago) by mmaechler
do.defaults(.., nonMatched.action = c("stop" ...))

Revision 2570 - Directory Listing
Modified Fri Jul 16 15:56:52 2010 UTC (9 years, 4 months ago) by dmbates
Added a do.defaults function

Revision 2569 - Directory Listing
Modified Fri Jul 16 15:04:45 2010 UTC (9 years, 4 months ago) by mmaechler
IRLS() tweaks; update( <glm4> ); "Model" mother class

Revision 2568 - Directory Listing
Modified Thu Jul 15 15:26:03 2010 UTC (9 years, 4 months ago) by dmbates
Simplify IRLS logic, at the cost of somewhat less accurate results

Revision 2567 - Directory Listing
Modified Thu Jul 15 14:35:58 2010 UTC (9 years, 4 months ago) by dmbates
Minor spelling mistake

Revision 2566 - Directory Listing
Modified Tue Jul 13 14:22:26 2010 UTC (9 years, 4 months ago) by mmaechler
IRLS(): more convergence crit. checking.  s/glm1/glm4/

Revision 2565 - Directory Listing
Modified Mon Jul 12 16:32:48 2010 UTC (9 years, 4 months ago) by mmaechler
"glpModel": docu etc; "CholeskyFactorization"

Revision 2564 - Directory Listing
Modified Fri Jul 9 19:45:42 2010 UTC (9 years, 4 months ago) by dmbates
Added examples from example(glm)

Revision 2563 - Directory Listing
Modified Fri Jul 9 19:45:15 2010 UTC (9 years, 4 months ago) by dmbates
Added a single fixed-point initial evaluation for glm1

Revision 2562 - Directory Listing
Modified Fri Jul 9 14:26:56 2010 UTC (9 years, 4 months ago) by dmbates
Remove the defunct 's' argument from the documentation.

Revision 2561 - Directory Listing
Modified Fri Jul 9 13:54:03 2010 UTC (9 years, 4 months ago) by mmaechler
fix \linkS4class{} typos; add trivial comments, export "lpMod"

Revision 2560 - Directory Listing
Modified Fri Jul 9 13:20:54 2010 UTC (9 years, 4 months ago) by mmaechler
which(.) now uses arrayInd(.) - as our "FIXME" said

Revision 2559 - Directory Listing
Modified Thu Jul 8 21:59:42 2010 UTC (9 years, 4 months ago) by dmbates
glm1 with dense and sparse X

Revision 2558 - Directory Listing
Modified Thu Jul 8 18:12:22 2010 UTC (9 years, 4 months ago) by dmbates
Add IRLS function and associated methods; these still have bugs apparently

Revision 2557 - Directory Listing
Modified Wed Jul 7 20:43:10 2010 UTC (9 years, 4 months ago) by dmbates
Initial version of respModule and predModule; glm1 (hidden) function

Revision 2556 - Directory Listing
Modified Mon Jul 5 16:58:27 2010 UTC (9 years, 4 months ago) by mmaechler
bug fixes for "!=", thanks to Ruth & Brian Ripley

Revision 2555 - Directory Listing
Modified Sat Jul 3 11:24:13 2010 UTC (9 years, 4 months ago) by mmaechler
nearPD(., doSym=FALSE) - changed default

Revision 2554 - Directory Listing
Modified Fri Jul 2 23:10:26 2010 UTC (9 years, 4 months ago) by mmaechler
nearPD() etc; see ChangeLog

Revision 2553 - Directory Listing
Modified Sat Jun 26 06:50:03 2010 UTC (9 years, 4 months ago) by mmaechler
fix mean(<sparse with NA>), thanks to Ruth Ripley

Revision 2552 - Directory Listing
Modified Thu Jun 24 19:36:40 2010 UTC (9 years, 5 months ago) by dmbates
Create -40.1 for SVN only allowing a dependency in lme4a for testing

Revision 2551 - Directory Listing
Modified Sat Jun 19 20:45:45 2010 UTC (9 years, 5 months ago) by mmaechler
some more coercions; e.g. sparseVector -> sparseMatrix

Revision 2550 - Directory Listing
Modified Fri Jun 11 19:15:13 2010 UTC (9 years, 5 months ago) by dmbates
Add const to argument for chm_factor_ldL2

Revision 2549 - Directory Listing
Modified Tue Jun 8 07:20:55 2010 UTC (9 years, 5 months ago) by mmaechler
M [ <lMatrix> ]  <- value  now works

Revision 2548 - Directory Listing
Modified Fri Jun 4 15:55:22 2010 UTC (9 years, 5 months ago) by mmaechler
sparseMatrix(*, dimnames=.) should work (again!)

Revision 2547 - Directory Listing
Modified Thu Jun 3 16:28:50 2010 UTC (9 years, 5 months ago) by mmaechler
model.Matrix() tweak

Revision 2546 - Directory Listing
Modified Wed Jun 2 09:48:52 2010 UTC (9 years, 5 months ago) by mmaechler
doc for new model.Matrix() (forgotten in rev 2544)

Revision 2545 - Directory Listing
Modified Wed Jun 2 09:48:05 2010 UTC (9 years, 5 months ago) by mmaechler
doc for new class (forgotten in rev 2544)

Revision 2544 - Directory Listing
Modified Wed Jun 2 09:29:01 2010 UTC (9 years, 5 months ago) by mmaechler
new model.Matrix(), sparse.model.matrix() return "modelMatrix" class

Revision 2543 - Directory Listing
Modified Sat May 22 11:10:18 2010 UTC (9 years, 6 months ago) by dmbates
Add const_CHM_SP, etc. argument declarations

Revision 2542 - Directory Listing
Modified Wed May 19 16:26:15 2010 UTC (9 years, 6 months ago) by dmbates
Replace const CHM_SP by const cholmod_sparse*, etc.

Revision 2541 - Directory Listing
Modified Wed May 19 16:25:57 2010 UTC (9 years, 6 months ago) by dmbates
Replace const CHM_SP by const cholmod_sparse*, etc.

Revision 2540 - Directory Listing
Modified Tue May 18 08:53:43 2010 UTC (9 years, 6 months ago) by mmaechler
rBind(<lsparse>, <lsparse>) now is <lsparse>

Revision 2539 - Directory Listing
Modified Sat May 15 19:50:45 2010 UTC (9 years, 6 months ago) by mmaechler
fix <sparseMatrix>[] <- value

Revision 2538 - Directory Listing
Modified Sat May 8 15:25:20 2010 UTC (9 years, 6 months ago) by mmaechler
sparse.model.matrix( ~ .. + I(...))

Revision 2537 - Directory Listing
Modified Sat May 8 15:24:53 2010 UTC (9 years, 6 months ago) by mmaechler
UTF-8

Revision 2536 - Directory Listing
Modified Mon May 3 18:47:14 2010 UTC (9 years, 6 months ago) by dmbates
Simplify CHM_SP, etc. definitions

Revision 2535 - Directory Listing
Modified Mon May 3 18:46:48 2010 UTC (9 years, 6 months ago) by dmbates
Add const modifiers

Revision 2534 - Directory Listing
Modified Sat May 1 21:39:29 2010 UTC (9 years, 6 months ago) by mmaechler
update condest() help page + cosmetic

Revision 2533 - Directory Listing
Modified Sat May 1 20:54:31 2010 UTC (9 years, 6 months ago) by mmaechler
missing "}"

Revision 2532 - Directory Listing
Modified Sat May 1 20:49:55 2010 UTC (9 years, 6 months ago) by mmaechler
new condest(), onenormest(); a bit more "pMatrix" methods

Revision 2531 - Directory Listing
Modified Wed Apr 28 15:29:56 2010 UTC (9 years, 6 months ago) by mmaechler
fac2sparse(): no longer use "Class" [= 1st arg of new()] explicitly

Revision 2530 - Directory Listing
Modified Thu Apr 8 15:07:00 2010 UTC (9 years, 7 months ago) by mmaechler
update CHOLMOD etc from Tim Davis -- using src/scripts/UFsparse_download.sh and CSparse_install.sh

Revision 2529 - Directory Listing
Modified Wed Mar 31 14:41:33 2010 UTC (9 years, 7 months ago) by mmaechler
lm.fit.sparse(x,y, w, *) (+ weights!) etc

Revision 2528 - Directory Listing
Modified Tue Mar 30 17:26:12 2010 UTC (9 years, 7 months ago) by mmaechler
typo in r2527

Revision 2527 - Directory Listing
Modified Tue Mar 30 17:22:44 2010 UTC (9 years, 7 months ago) by mmaechler
enable sparse.model.matrix( ~ 1)

Revision 2526 - Directory Listing
Modified Sat Mar 27 11:08:43 2010 UTC (9 years, 7 months ago) by mmaechler
which() methods + checks; small things

Revision 2525 - Directory Listing
Modified Wed Mar 24 11:15:01 2010 UTC (9 years, 8 months ago) by mmaechler
M[ij] indexing now works with non-integer numeric ij and checks better; other changes, see ChangeLog

Revision 2524 - Directory Listing
Modified Wed Mar 17 18:41:12 2010 UTC (9 years, 8 months ago) by mmaechler
relax rcond() comparison [found by Daniel S. Bove]

Revision 2523 - Directory Listing
Modified Wed Mar 3 07:42:37 2010 UTC (9 years, 8 months ago) by mmaechler
fixing two []-buglets; rep2abI()

Revision 2522 - Directory Listing
Modified Mon Mar 1 21:18:27 2010 UTC (9 years, 8 months ago) by mmaechler
export + doc rep2abI()

Revision 2521 - Directory Listing
Modified Fri Feb 12 15:32:03 2010 UTC (9 years, 9 months ago) by mmaechler
solve(<dtrMatrix>, *) for <Cholesky> in lme4

Revision 2520 - Directory Listing
Modified Fri Feb 12 10:51:37 2010 UTC (9 years, 9 months ago) by mmaechler
det(): export regularly (with "masking warning") instead of base namespace hack

Revision 2519 - Directory Listing
Modified Fri Feb 5 17:20:14 2010 UTC (9 years, 9 months ago) by mmaechler
ore <sparse>[.,.] fixes, using cholmod_submatrix() now

Revision 2518 - Directory Listing
Modified Thu Feb 4 17:09:33 2010 UTC (9 years, 9 months ago) by mmaechler
fix <sparse>[0,0] -> version 0.999375-36

Revision 2517 - Directory Listing
Modified Wed Feb 3 11:33:18 2010 UTC (9 years, 9 months ago) by mmaechler
Fix <n.TMatrix>[ <ij-matrix> ] <- FALSE

Revision 2516 - Directory Listing
Modified Mon Feb 1 13:27:27 2010 UTC (9 years, 9 months ago) by mmaechler
add a PROTECT() [hint from A.Runnalls]

Revision 2515 - Directory Listing
Modified Wed Jan 27 19:08:13 2010 UTC (9 years, 9 months ago) by mmaechler
update for minor change in checkMatrix() [r2514]

Revision 2514 - Directory Listing
Modified Sat Jan 23 22:18:53 2010 UTC (9 years, 10 months ago) by mmaechler
nnzero() is generic; det[erminant]() cosmetic

Revision 2513 - Directory Listing
Modified Tue Jan 19 17:50:15 2010 UTC (9 years, 10 months ago) by mmaechler
get rid of new R-devel "note/warning"

Revision 2512 - Directory Listing
Modified Mon Jan 18 17:05:35 2010 UTC (9 years, 10 months ago) by mmaechler
Matrix`s own contr.poly() had an infelicitous default

Revision 2511 - Directory Listing
Modified Mon Dec 28 21:09:40 2009 UTC (9 years, 10 months ago) by dmbates
New version

Revision 2510 - Directory Listing
Modified Mon Dec 28 21:09:09 2009 UTC (9 years, 10 months ago) by dmbates
Export cholmod_band_inplace

Revision 2509 - Directory Listing
Modified Mon Dec 28 21:07:40 2009 UTC (9 years, 10 months ago) by dmbates
allow as_cholmod_sparse to contend with over-allocation

Revision 2508 - Directory Listing
Modified Thu Dec 24 09:47:57 2009 UTC (9 years, 11 months ago) by mmaechler
Use Matrix-multiplication for sparse "[" for now

Revision 2507 - Directory Listing
Modified Tue Dec 22 21:11:49 2009 UTC (9 years, 11 months ago) by mmaechler
many "abIndex" methods and tests ++ see ChangeLog

Revision 2506 - Directory Listing
Modified Fri Dec 11 12:54:28 2009 UTC (9 years, 11 months ago) by mmaechler
fix *sTMatrix -> sparseVector; etc

Revision 2505 - Directory Listing
Modified Wed Dec 9 17:33:23 2009 UTC (9 years, 11 months ago) by mmaechler
<sparseMatrix> o <numeric> remains sparse in more cases

Revision 2504 - Directory Listing
Modified Mon Dec 7 00:32:23 2009 UTC (9 years, 11 months ago) by dmbates
Add URL: key

Revision 2503 - Directory Listing
Modified Sun Dec 6 19:40:51 2009 UTC (9 years, 11 months ago) by mmaechler
implement missing sparseVector "Ops"

Revision 2502 - Directory Listing
Modified Fri Dec 4 21:37:45 2009 UTC (9 years, 11 months ago) by dmbates
Remove comment within a comment -Wall

Revision 2501 - Directory Listing
Modified Tue Dec 1 18:42:27 2009 UTC (9 years, 11 months ago) by dmbates
Documentation error detected by Stefanie Kalus

Revision 2500 - Directory Listing
Modified Fri Nov 20 13:22:17 2009 UTC (10 years ago) by mmaechler
<sparseVector>  method improvements

Revision 2499 - Directory Listing
Modified Thu Nov 19 13:38:25 2009 UTC (10 years ago) by mmaechler
detach(<Rgraphviz>) for cleanness

Revision 2498 - Directory Listing
Modified Thu Nov 19 13:37:02 2009 UTC (10 years ago) by mmaechler
use require(*, save=FALSE) {for *not* providing '.required'}

Revision 2497 - Directory Listing
Modified Sat Nov 14 21:36:25 2009 UTC (10 years ago) by mmaechler
put "abIndex" class in, even if very unfinished;
otherwise, too many changed files get in my way

Revision 2496 - Directory Listing
Modified Sat Nov 14 17:24:42 2009 UTC (10 years ago) by mmaechler
tests/ update

Revision 2495 - Directory Listing
Modified Wed Nov 11 08:45:21 2009 UTC (10 years ago) by mmaechler
add missing PROTECT()

Revision 2494 - Directory Listing
Modified Mon Nov 2 11:55:36 2009 UTC (10 years ago) by mmaechler
cosmetic

Revision 2493 - Directory Listing
Modified Mon Nov 2 11:55:05 2009 UTC (10 years ago) by mmaechler
symmetric sparse o diagonal;  diag o triangular; etc

Revision 2492 - Directory Listing
Modified Mon Nov 2 11:54:23 2009 UTC (10 years ago) by mmaechler
improve "[" a bit for large nnz - using less memory

Revision 2491 - Directory Listing
Modified Sat Oct 24 21:04:46 2009 UTC (10 years, 1 month ago) by mmaechler
still *do* need the explicit diagU2N() workaround

Revision 2490 - Directory Listing
Modified Sat Oct 24 20:40:09 2009 UTC (10 years, 1 month ago) by mmaechler
checkMatrix() does crossprod() now; also see ChangeLog

Revision 2489 - Directory Listing
Modified Sat Oct 24 20:33:05 2009 UTC (10 years, 1 month ago) by mmaechler
move remaining "%*%" methods to products.R

Revision 2488 - Directory Listing
Modified Sat Oct 24 20:29:18 2009 UTC (10 years, 1 month ago) by mmaechler
dgeMatrix_LU(*, errr_Sing)

Revision 2487 - Directory Listing
Modified Tue Oct 20 13:51:02 2009 UTC (10 years, 1 month ago) by mmaechler
two trivial typos

Revision 2486 - Directory Listing
Modified Tue Oct 6 09:35:15 2009 UTC (10 years, 1 month ago) by mmaechler
revert cholmod_common access in *exported* cholmod error handler

Revision 2485 - Directory Listing
Modified Tue Oct 6 09:32:05 2009 UTC (10 years, 1 month ago) by mmaechler
better adapt chol2inv definition to newer R`s implicit generic

Revision 2484 - Directory Listing
Modified Fri Oct 2 17:57:48 2009 UTC (10 years, 1 month ago) by dmbates
Remove declarations of now-unused identifiers

Revision 2483 - Directory Listing
Modified Thu Oct 1 21:21:20 2009 UTC (10 years, 1 month ago) by dmbates
New mechanism for saving and restoring the cholmod_common struct

Revision 2482 - Directory Listing
Modified Wed Sep 30 09:37:15 2009 UTC (10 years, 1 month ago) by mmaechler
fix infinite recursion for image(), solve() with ddiMatrix

Revision 2481 - Directory Listing
Modified Tue Sep 29 16:43:21 2009 UTC (10 years, 1 month ago) by mmaechler
generic rcond, only if not-so-new versions of R

Revision 2480 - Directory Listing
Modified Sat Sep 26 15:45:44 2009 UTC (10 years, 1 month ago) by dmbates
Create and populate a .chm_common environment

Revision 2479 - Directory Listing
Modified Sat Sep 26 15:30:25 2009 UTC (10 years, 1 month ago) by dmbates
Change CHM_(re)store_common to have the environment passed

Revision 2478 - Directory Listing
Modified Wed Sep 23 22:20:14 2009 UTC (10 years, 2 months ago) by dmbates
Add CHM_(re)store_common to save and restore part of the cholmod_common struct.  Not yet working.

Revision 2477 - Directory Listing
Modified Wed Sep 23 12:23:57 2009 UTC (10 years, 2 months ago) by mmaechler
release ready

Revision 2476 - Directory Listing
Modified Wed Sep 23 12:09:07 2009 UTC (10 years, 2 months ago) by mmaechler
more "Ops" definitions and systematically check them

Revision 2475 - Directory Listing
Modified Wed Sep 23 02:07:33 2009 UTC (10 years, 2 months ago) by dmbates
R_cholmod_print now redundant

Revision 2474 - Directory Listing
Modified Mon Sep 21 16:49:33 2009 UTC (10 years, 2 months ago) by mmaechler
hopefully better version of Matrix_stubs for CHOLMOD error

Revision 2473 - Directory Listing
Modified Mon Sep 21 08:34:14 2009 UTC (10 years, 2 months ago) by mmaechler
some cleanup; notably the exported M_R_cholmod_error()

Revision 2472 - Directory Listing
Modified Sat Sep 19 06:10:48 2009 UTC (10 years, 2 months ago) by mmaechler
solve(<CHMfactor>); more chol2inv(); more methods against "disambiguity" notes, notably "[" ones, including a buglet fix

Revision 2471 - Directory Listing
Modified Fri Sep 18 12:45:10 2009 UTC (10 years, 2 months ago) by mmaechler
change identical to "all.equal"; needed for GOTO BLAS, thanks to Ei-ji Nakama.

Revision 2470 - Directory Listing
Modified Thu Sep 17 21:16:19 2009 UTC (10 years, 2 months ago) by mmaechler
mention extraneous arguments ("R CMD check")

Revision 2469 - Directory Listing
Modified Thu Sep 17 21:09:10 2009 UTC (10 years, 2 months ago) by mmaechler
docu + example for chol2inv()

Revision 2468 - Directory Listing
Modified Wed Sep 16 14:41:39 2009 UTC (10 years, 2 months ago) by dmbates
Add chol2inv method

Revision 2467 - Directory Listing
Modified Fri Sep 11 23:26:28 2009 UTC (10 years, 2 months ago) by mmaechler
new (as required) via "doxygen -u"

Revision 2466 - Directory Listing
Modified Fri Sep 11 23:23:38 2009 UTC (10 years, 2 months ago) by mmaechler
fix some  \link[..]{}s as found via R-devel

Revision 2465 - Directory Listing
Modified Fri Sep 11 22:49:33 2009 UTC (10 years, 2 months ago) by mmaechler
sparseVector Ops; printing "non-structural FALSE" in logical sparseMatrix; more use of paste0()

Revision 2464 - Directory Listing
Modified Fri Sep 11 17:00:12 2009 UTC (10 years, 2 months ago) by mmaechler
cosmetic (shuffle)

Revision 2463 - Directory Listing
Modified Wed Sep 2 12:45:57 2009 UTC (10 years, 2 months ago) by mmaechler
determinant(<CHMfactor>) now does return  det( "L" )

Revision 2462 - Directory Listing
Modified Sat Aug 29 22:25:01 2009 UTC (10 years, 2 months ago) by mmaechler
add regression test for ("U-triang" %*% diag)

Revision 2461 - Directory Listing
Modified Sat Aug 29 22:24:23 2009 UTC (10 years, 2 months ago) by mmaechler
fix thinkos in last change.

Revision 2460 - Directory Listing
Modified Sat Aug 29 04:08:52 2009 UTC (10 years, 2 months ago) by dmbates
Over-allocate memory by 1 double so the pointer is never NULL.  The CHOLMOD code checks for NULL pointers and throws an error, even when the vector has length 0.

Revision 2459 - Directory Listing
Modified Fri Aug 28 22:48:57 2009 UTC (10 years, 2 months ago) by dmbates
Changes for memory protection but this version fails R CMD check.

Revision 2458 - Directory Listing
Modified Fri Aug 28 22:19:48 2009 UTC (10 years, 2 months ago) by dmbates
Fix diag by unit triangular operations

Revision 2457 - Directory Listing
Modified Fri Aug 28 22:18:23 2009 UTC (10 years, 2 months ago) by dmbates
Memory leak in xpt

Revision 2456 - Directory Listing
Modified Fri Aug 28 14:52:04 2009 UTC (10 years, 2 months ago) by mmaechler
fix PROTECT_WITH_INDEX() use

Revision 2455 - Directory Listing
Modified Fri Aug 28 14:37:39 2009 UTC (10 years, 2 months ago) by mmaechler
more PROTECT() {from Andrew Runnalls}; doxy

Revision 2454 - Directory Listing
Modified Fri Aug 28 14:36:21 2009 UTC (10 years, 2 months ago) by mmaechler
{Aug.21:} improve sparse-awareness of `contrasts<-`

Revision 2453 - Directory Listing
Modified Fri Aug 28 14:32:25 2009 UTC (10 years, 2 months ago) by mmaechler
renaming to an_NA_in_x {Aug.21}

Revision 2449 - Directory Listing
Modified Wed Jul 29 09:17:04 2009 UTC (10 years, 3 months ago) by mmaechler
make use of Rf_mkNamed() [as from the very latest R-devel] when in R >= 2.10.0

Revision 2448 - Directory Listing
Modified Tue Jul 28 19:05:56 2009 UTC (10 years, 3 months ago) by mmaechler
update

Revision 2447 - Directory Listing
Modified Tue Jul 28 18:58:44 2009 UTC (10 years, 3 months ago) by mmaechler
no singularity warning during determinant()

Revision 2446 - Directory Listing
Modified Tue Jul 28 18:58:03 2009 UTC (10 years, 3 months ago) by mmaechler
quiet codoc checking for R-devel

Revision 2445 - Directory Listing
Modified Mon Jul 27 13:38:31 2009 UTC (10 years, 3 months ago) by mmaechler
sparse.model.matrix() rewrite and tests

Revision 2443 - Directory Listing
Modified Mon Jul 20 21:01:01 2009 UTC (10 years, 4 months ago) by mmaechler
Cholesky() methods doc - belongs to r2442

Revision 2442 - Directory Listing
Modified Mon Jul 20 20:58:57 2009 UTC (10 years, 4 months ago) by mmaechler
fix seg.fault after error in Cholesky(*, perm=FALSE)

Revision 2441 - Directory Listing
Modified Mon Jul 20 16:58:27 2009 UTC (10 years, 4 months ago) by mmaechler
set CHOLMOD`s own print_function to NULL

Revision 2440 - Directory Listing
Modified Mon Jul 20 09:21:22 2009 UTC (10 years, 4 months ago) by mmaechler
rcond(<pattern matrix>)

Revision 2439 - Directory Listing
Modified Sat Jul 18 16:03:36 2009 UTC (10 years, 4 months ago) by mmaechler
Cholesky(*, super = NA): fix "factors" caching

Revision 2438 - Directory Listing
Modified Fri Jul 17 20:01:12 2009 UTC (10 years, 4 months ago) by mmaechler
first cut on hint about future determinant(<Choleski>) change

Revision 2434 - Directory Listing
Modified Tue Jul 14 04:35:50 2009 UTC (10 years, 4 months ago) by mmaechler
diff(sval) <= 0 (can well be 0)

Revision 2430 - Directory Listing
Modified Tue Jul 14 03:21:39 2009 UTC (10 years, 4 months ago) by mmaechler
fix mini-thinko

Revision 2429 - Directory Listing
Modified Tue Jul 14 02:21:17 2009 UTC (10 years, 4 months ago) by mmaechler
sparse.model.matrix() improvements

Revision 2422 - Directory Listing
Modified Sat Jul 11 20:36:10 2009 UTC (10 years, 4 months ago) by mmaechler
export isLDL, test it; small fixes WRT contr.*(., sparse) 

Revision 2421 - Directory Listing
Modified Sat Jul 11 20:12:16 2009 UTC (10 years, 4 months ago) by mmaechler
rationalize show()/print() and printSpMatrix2()

Revision 2418 - Directory Listing
Modified Fri Jul 10 20:26:43 2009 UTC (10 years, 4 months ago) by dmbates
Updates to the destructive update of sparse Cholesky

Revision 2417 - Directory Listing
Modified Fri Jul 10 16:17:28 2009 UTC (10 years, 4 months ago) by dmbates
Special cases of multiplication of sparse and diagonal matrices

Revision 2416 - Directory Listing
Modified Thu Jul 9 22:21:40 2009 UTC (10 years, 4 months ago) by mmaechler
do not test for model.frame, just data.frame

Revision 2415 - Directory Listing
Modified Thu Jul 9 07:51:05 2009 UTC (10 years, 4 months ago) by mmaechler
export (& doc) sparse.model.matrix()

Revision 2414 - Directory Listing
Modified Wed Jul 8 21:50:41 2009 UTC (10 years, 4 months ago) by mmaechler
sparse.model.matrix()  +- ok now

Revision 2413 - Directory Listing
Modified Mon Jun 29 16:25:29 2009 UTC (10 years, 4 months ago) by mmaechler
explain inconsistency in determinant(<CHMfactor>) and determinant(<Cholesky>)

Revision 2412 - Directory Listing
Modified Fri Jun 26 09:13:48 2009 UTC (10 years, 4 months ago) by mmaechler
from the texlive "preprint" collection - for platforms that lack it

Revision 2411 - Directory Listing
Modified Thu Jun 25 12:39:21 2009 UTC (10 years, 4 months ago) by mmaechler
aesthetics: do not use "1L" as part of  n:m

Revision 2410 - Directory Listing
Modified Tue Jun 23 06:26:44 2009 UTC (10 years, 5 months ago) by mmaechler
regr.test for "keep LL"

Revision 2409 - Directory Listing
Modified Sat Jun 20 20:55:13 2009 UTC (10 years, 5 months ago) by dmbates
chm_factor_update: Ensure an updated LL factor stays LL

Revision 2408 - Directory Listing
Modified Fri Jun 12 10:22:01 2009 UTC (10 years, 5 months ago) by mmaechler
German translation updates from Chris

Revision 2407 - Directory Listing
Modified Thu Jun 11 07:22:56 2009 UTC (10 years, 5 months ago) by mmaechler
cosmetic: merge Doug's and mine

Revision 2406 - Directory Listing
Modified Wed Jun 10 18:32:21 2009 UTC (10 years, 5 months ago) by dmbates


Revision 2405 - Directory Listing
Modified Wed Jun 10 18:28:13 2009 UTC (10 years, 5 months ago) by dmbates
New release

Revision 2404 - Directory Listing
Modified Wed Jun 10 18:27:23 2009 UTC (10 years, 5 months ago) by dmbates
Change value of set_factor to be the cached factor

Revision 2403 - Directory Listing
Modified Wed Jun 10 18:25:41 2009 UTC (10 years, 5 months ago) by dmbates
Comment out unused dgCMatrix_lusol function

Revision 2402 - Directory Listing
Modified Wed Jun 10 17:22:59 2009 UTC (10 years, 5 months ago) by dmbates
R-level implementation of solve("dgCMatrix", "missing")

Revision 2401 - Directory Listing
Modified Wed Jun 10 17:19:40 2009 UTC (10 years, 5 months ago) by dmbates
Re-arrange LU factorization to always use the cached value.

Revision 2400 - Directory Listing
Modified Wed Jun 10 07:18:29 2009 UTC (10 years, 5 months ago) by mmaechler
my own translation own updates

Revision 2399 - Directory Listing
Modified Tue Jun 9 22:57:25 2009 UTC (10 years, 5 months ago) by dmbates
PROTECT the result from dgCMatrix_LU in dgCMatrix_matrix_solve

Revision 2398 - Directory Listing
Modified Mon Jun 8 08:26:20 2009 UTC (10 years, 5 months ago) by mmaechler
fix^2 (still the change in r2391)

Revision 2397 - Directory Listing
Modified Mon Jun 8 08:25:17 2009 UTC (10 years, 5 months ago) by mmaechler
fix^2 (still the change in r2391)

Revision 2396 - Directory Listing
Modified Mon Jun 8 08:13:08 2009 UTC (10 years, 5 months ago) by mmaechler
fix

Revision 2395 - Directory Listing
Modified Mon Jun 8 08:02:47 2009 UTC (10 years, 5 months ago) by mmaechler
ready for release

Revision 2394 - Directory Listing
Modified Sat Jun 6 21:45:37 2009 UTC (10 years, 5 months ago) by mmaechler
kronecker( <numeric> )

Revision 2393 - Directory Listing
Modified Fri Jun 5 12:40:05 2009 UTC (10 years, 5 months ago) by mmaechler
*do* want the translations!

Revision 2392 - Directory Listing
Modified Fri Jun 5 10:34:37 2009 UTC (10 years, 5 months ago) by mmaechler
use dngettext only in R 2.10.0; translations have both variants

Revision 2391 - Directory Listing
Modified Thu Jun 4 08:32:22 2009 UTC (10 years, 5 months ago) by mmaechler
more defensive programming

Revision 2390 - Directory Listing
Modified Thu Jun 4 08:26:12 2009 UTC (10 years, 5 months ago) by mmaechler
translation updates

Revision 2389 - Directory Listing
Modified Thu Jun 4 07:56:12 2009 UTC (10 years, 5 months ago) by mmaechler
German translations "as is"

Revision 2388 - Directory Listing
Modified Wed Jun 3 09:54:41 2009 UTC (10 years, 5 months ago) by mmaechler
rm extraneous 's' (from May 28)

Revision 2387 - Directory Listing
Modified Fri May 29 12:50:34 2009 UTC (10 years, 5 months ago) by mmaechler
fix up internationalization of (error/warning) messages

Revision 2386 - Directory Listing
Modified Wed May 27 20:54:45 2009 UTC (10 years, 5 months ago) by mmaechler
remove extraneous slots in some *-class.Rd files

Revision 2385 - Directory Listing
Modified Mon May 25 20:46:55 2009 UTC (10 years, 6 months ago) by mmaechler
cosmetic

Revision 2384 - Directory Listing
Modified Mon May 25 14:44:03 2009 UTC (10 years, 6 months ago) by mmaechler
rm superfluous gettextf()

Revision 2383 - Directory Listing
Modified Mon May 25 12:17:16 2009 UTC (10 years, 6 months ago) by mmaechler
workaround tcrossprod() bug in "old" R 2.9.0

Revision 2382 - Directory Listing
Modified Mon May 25 10:31:27 2009 UTC (10 years, 6 months ago) by mmaechler
update messages data (for translations)

Revision 2381 - Directory Listing
Modified Mon May 25 09:56:10 2009 UTC (10 years, 6 months ago) by mmaechler
related to %*%, [t]crossprod() extensions, i.e. r2380

Revision 2380 - Directory Listing
Modified Mon May 25 09:45:37 2009 UTC (10 years, 6 months ago) by mmaechler
move %*%, [t]crossprod() methods to own file products.R; + "sparseVector" methods

Revision 2379 - Directory Listing
Modified Mon May 25 08:38:30 2009 UTC (10 years, 6 months ago) by mmaechler
For ease of *development*: comments to ease quick transformation of the file
    in one which saves recompilation in all subdirectories

Revision 2378 - Directory Listing
Modified Sat May 23 18:06:03 2009 UTC (10 years, 6 months ago) by mmaechler
remove old out-commented code

Revision 2377 - Directory Listing
Modified Wed May 20 06:55:22 2009 UTC (10 years, 6 months ago) by mmaechler
1-letter typo

Revision 2376 - Directory Listing
Modified Mon May 18 14:46:28 2009 UTC (10 years, 6 months ago) by mmaechler
oops: forgot to commit the data for r2369

Revision 2375 - Directory Listing
Modified Mon May 18 14:43:08 2009 UTC (10 years, 6 months ago) by mmaechler
dim(<symmetric/diagonal>) <- v; etc

Revision 2374 - Directory Listing
Modified Mon May 18 14:40:09 2009 UTC (10 years, 6 months ago) by mmaechler
new rankMatrix()

Revision 2373 - Directory Listing
Modified Sat May 9 19:21:40 2009 UTC (10 years, 6 months ago) by mmaechler
Matrix_check_*() slightly more logical  PROTECT() / UNPROTECT() .. 
does not solve the problems (completely).

Revision 2372 - Directory Listing
Modified Fri May 8 14:06:25 2009 UTC (10 years, 6 months ago) by mmaechler
PROTECT()  "every SEXP in sight" inside the two  Matrix_check_class*(),
but this is still not quite sufficient

Revision 2371 - Directory Listing
Modified Thu May 7 20:48:03 2009 UTC (10 years, 6 months ago) by dmbates
Add const in declaration (-Wall)

Revision 2370 - Directory Listing
Modified Thu May 7 17:15:34 2009 UTC (10 years, 6 months ago) by dmbates
Remove unnecessary call to strdup whose result was not being freed

Revision 2369 - Directory Listing
Modified Wed May 6 10:01:37 2009 UTC (10 years, 6 months ago) by mmaechler
nice error message on readMM(<malformed>)

Revision 2368 - Directory Listing
Modified Sat May 2 07:29:30 2009 UTC (10 years, 6 months ago) by mmaechler
just *r*ecommended, not *R*...

Revision 2367 - Directory Listing
Modified Wed Apr 29 10:13:42 2009 UTC (10 years, 6 months ago) by mmaechler
comment cosmetic

Revision 2366 - Directory Listing
Modified Tue Apr 21 08:04:17 2009 UTC (10 years, 7 months ago) by mmaechler
my affiliation; some (but not enough) shortening

Revision 2365 - Directory Listing
Modified Mon Apr 20 20:28:35 2009 UTC (10 years, 7 months ago) by dmbates
Initial version

Revision 2364 - Directory Listing
Modified Sat Apr 18 23:32:30 2009 UTC (10 years, 7 months ago) by mmaechler
"fix" for the problem that .M.classEnv is not found when Matrix is only loaded but not attached

Revision 2363 - Directory Listing
Modified Thu Apr 9 20:45:32 2009 UTC (10 years, 7 months ago) by mmaechler
as(., "vector"); M[i, drop=<LOGI>] vector-indexing; fix (& check) rare problem in <TsparseTriangular[i,]; some cosmetics

Revision 2362 - Directory Listing
Modified Tue Apr 7 09:44:11 2009 UTC (10 years, 7 months ago) by mmaechler
sparseVector (part 2)

Revision 2361 - Directory Listing
Modified Tue Apr 7 09:20:19 2009 UTC (10 years, 7 months ago) by mmaechler
lu() "part 2"; sparseVector

Revision 2360 - Directory Listing
Modified Tue Apr 7 07:55:03 2009 UTC (10 years, 7 months ago) by mmaechler
lu(*, warnSing)

Revision 2359 - Directory Listing
Modified Mon Apr 6 15:57:50 2009 UTC (10 years, 7 months ago) by mmaechler
rid code of pre-2.9.0 -- part 3

Revision 2358 - Directory Listing
Modified Mon Apr 6 15:54:38 2009 UTC (10 years, 7 months ago) by mmaechler
rid code of pre-2.9.0 if()s... part 2

Revision 2357 - Directory Listing
Modified Mon Apr 6 15:53:51 2009 UTC (10 years, 7 months ago) by mmaechler
rid code of pre-2.9.0 if()s; also use 2.9.0-based tests/*.Rout.save where appropriate

Revision 2354 - Directory Listing
Modified Mon Mar 30 15:31:23 2009 UTC (10 years, 7 months ago) by mmaechler
more robust MatrixClass(); in C, use methods:::classEnv() via wrapper

Revision 2353 - Directory Listing
Modified Wed Mar 25 13:39:29 2009 UTC (10 years, 8 months ago) by mmaechler
use MatrixClass() ... forgot another one

Revision 2352 - Directory Listing
Modified Wed Mar 25 10:42:22 2009 UTC (10 years, 8 months ago) by mmaechler
use C-level Matrix_check_class_and_super() ... forgot one

Revision 2351 - Directory Listing
Modified Wed Mar 25 10:41:05 2009 UTC (10 years, 8 months ago) by mmaechler
use C-level Matrix_check_class_and_super(); adapt R code (and checks!) that work with class names similarly, using new MatrixClass()

Revision 2350 - Directory Listing
Modified Wed Mar 25 10:28:34 2009 UTC (10 years, 8 months ago) by mmaechler
minor cleanups

Revision 2349 - Directory Listing
Modified Wed Mar 25 10:22:28 2009 UTC (10 years, 8 months ago) by mmaechler
drop FIXME; add example

Revision 2348 - Directory Listing
Modified Mon Mar 23 16:50:14 2009 UTC (10 years, 8 months ago) by mmaechler
Matrix_check_class_and_super() [+ 'const' for Matrix_make_named()]

Revision 2347 - Directory Listing
Modified Thu Mar 12 10:44:50 2009 UTC (10 years, 8 months ago) by mmaechler
see also  bandSparse()

Revision 2346 - Directory Listing
Modified Thu Mar 12 10:40:52 2009 UTC (10 years, 8 months ago) by mmaechler
band(x, .,.) fixes, notably for dense x

Revision 2345 - Directory Listing
Modified Wed Mar 11 18:41:28 2009 UTC (10 years, 8 months ago) by mmaechler
address remaining warnings in tests/Simple.R, see ChangeLog

Revision 2344 - Directory Listing
Modified Tue Mar 10 18:03:14 2009 UTC (10 years, 8 months ago) by dmbates
Replace is.na by !is.finite in eqDeterminant

Revision 2343 - Directory Listing
Modified Sun Mar 8 23:09:40 2009 UTC (10 years, 8 months ago) by dmbates
Abstract for DSC 2009

Revision 2342 - Directory Listing
Modified Tue Mar 3 09:26:38 2009 UTC (10 years, 8 months ago) by mmaechler
comment \Rdversion{}:  gives warning in R 2.8.1

Revision 2341 - Directory Listing
Modified Mon Mar 2 17:53:13 2009 UTC (10 years, 8 months ago) by mmaechler
misc.cleanup; mostly related to "all NA sparse mat."; see ChangeLog

Revision 2340 - Directory Listing
Modified Mon Mar 2 17:52:35 2009 UTC (10 years, 8 months ago) by mmaechler
new function bandSparse()

Revision 2339 - Directory Listing
Modified Mon Mar 2 17:50:23 2009 UTC (10 years, 8 months ago) by mmaechler
AIX compilers need BLAS..UNDERSCORE; thanks to Kurt Hornik and Ei-ji Nakama

Revision 2338 - Directory Listing
Modified Fri Feb 13 16:08:32 2009 UTC (10 years, 9 months ago) by mmaechler
add sh-script for dropping SPQR parts

Revision 2337 - Directory Listing
Modified Fri Feb 13 15:10:24 2009 UTC (10 years, 9 months ago) by mmaechler
use  Matrix_with_SPQR

Revision 2336 - Directory Listing
Modified Fri Feb 13 15:07:27 2009 UTC (10 years, 9 months ago) by mmaechler
#define and use  Matrix_with_SPQR

Revision 2335 - Directory Listing
Modified Fri Feb 13 14:09:22 2009 UTC (10 years, 9 months ago) by mmaechler
<ngCMatrix>[, j] <- val  -- fix

Revision 2334 - Directory Listing
Modified Mon Feb 2 20:31:40 2009 UTC (10 years, 9 months ago) by dmbates


Revision 2333 - Directory Listing
Modified Fri Jan 30 23:09:44 2009 UTC (10 years, 9 months ago) by mmaechler
ready to release *-20; do not call spqr() on Windows; minor coercion changes, notably for "pMatrix", see ChangeLog

Revision 2332 - Directory Listing
Modified Thu Jan 29 15:14:59 2009 UTC (10 years, 9 months ago) by mmaechler
long standing small tweaks; release prep

Revision 2331 - Directory Listing
Modified Thu Jan 29 15:13:15 2009 UTC (10 years, 9 months ago) by mmaechler
more diagMatrix arithmetic ops for new method-dispatch

Revision 2330 - Directory Listing
Modified Thu Jan 29 09:35:33 2009 UTC (10 years, 9 months ago) by mmaechler
Ops.x.x fix fix

Revision 2329 - Directory Listing
Modified Thu Jan 29 09:12:44 2009 UTC (10 years, 9 months ago) by mmaechler
Ops.x.x fix (of yesterday) for new "inherited-method-dispatch"

Revision 2328 - Directory Listing
Modified Wed Jan 28 10:29:13 2009 UTC (10 years, 9 months ago) by mmaechler
fix \link{}s

Revision 2327 - Directory Listing
Modified Wed Jan 28 08:46:07 2009 UTC (10 years, 9 months ago) by mmaechler
miscellaneous; some relating to SPQR

Revision 2326 - Directory Listing
Modified Wed Jan 28 08:43:40 2009 UTC (10 years, 9 months ago) by mmaechler
spqr()  |-> "SPQR" class

Revision 2325 - Directory Listing
Modified Mon Jan 26 22:49:22 2009 UTC (10 years, 9 months ago) by dmbates
Forgot a cs_free

Revision 2324 - Directory Listing
Modified Mon Jan 26 21:45:27 2009 UTC (10 years, 9 months ago) by dmbates
Force sorted columns after expanding unit diagonal in Matrix_as_cs

Revision 2323 - Directory Listing
Modified Wed Jan 21 20:50:12 2009 UTC (10 years, 10 months ago) by mmaechler
first step at dealing with NA in indices

Revision 2322 - Directory Listing
Modified Wed Jan 21 20:42:42 2009 UTC (10 years, 10 months ago) by mmaechler
2nd steps towards an R - SPQR interface

Revision 2321 - Directory Listing
Modified Tue Jan 20 08:44:45 2009 UTC (10 years, 10 months ago) by mmaechler
typos in sparseMatrix.Rd; ..

Revision 2320 - Directory Listing
Modified Mon Jan 19 18:00:37 2009 UTC (10 years, 10 months ago) by mmaechler
for release

Revision 2319 - Directory Listing
Modified Sun Jan 18 20:04:54 2009 UTC (10 years, 10 months ago) by dmbates
Added an untested create_Csparse function

Revision 2318 - Directory Listing
Modified Sat Jan 17 20:11:18 2009 UTC (10 years, 10 months ago) by mmaechler
sparseMatrix() tweaks [index1 = TRUE]

Revision 2317 - Directory Listing
Modified Fri Jan 16 17:42:58 2009 UTC (10 years, 10 months ago) by mmaechler
merge some of my version; also extending the examples

Revision 2316 - Directory Listing
Modified Fri Jan 16 17:40:10 2009 UTC (10 years, 10 months ago) by mmaechler
replace GNU-make by "standard make" Makefile

Revision 2315 - Directory Listing
Modified Mon Jan 12 22:32:24 2009 UTC (10 years, 10 months ago) by dmbates


Revision 2314 - Directory Listing
Modified Mon Jan 12 22:28:15 2009 UTC (10 years, 10 months ago) by dmbates
New help page

Revision 2313 - Directory Listing
Modified Mon Jan 12 20:35:38 2009 UTC (10 years, 10 months ago) by dmbates
Use intermediate triplet rep in sparseMatrix

Revision 2312 - Directory Listing
Modified Sat Jan 10 14:01:26 2009 UTC (10 years, 10 months ago) by mmaechler
new sparseMatrix(): construct *sorted* Csparse from un-sorted input, using modify-in-place under the hood

Revision 2311 - Directory Listing
Modified Tue Jan 6 14:56:04 2009 UTC (10 years, 10 months ago) by mmaechler
small glitches caught by Rd_parse

Revision 2310 - Directory Listing
Modified Wed Dec 10 18:36:40 2008 UTC (10 years, 11 months ago) by dmbates


Revision 2309 - Directory Listing
Modified Wed Dec 10 18:23:57 2008 UTC (10 years, 11 months ago) by dmbates
New release

Revision 2308 - Directory Listing
Modified Fri Dec 5 15:42:04 2008 UTC (10 years, 11 months ago) by dmbates
Adding const for picky compilers; Using CHM_FR typedef

Revision 2307 - Directory Listing
Modified Mon Nov 17 11:45:34 2008 UTC (11 years ago) by mmaechler
update (as of Oct.26)

Revision 2306 - Directory Listing
Modified Fri Oct 31 21:32:43 2008 UTC (11 years ago) by dmbates
Consistency with cholmod.h re const qualifier

Revision 2305 - Directory Listing
Modified Sun Oct 26 17:08:30 2008 UTC (11 years ago) by dmbates
Adjust tests and examples for new behavior on unsorted columns

Revision 2304 - Directory Listing
Modified Sun Oct 26 15:27:45 2008 UTC (11 years ago) by dmbates
Report an error on unsorted columns rather than sorting them

Revision 2303 - Directory Listing
Modified Mon Oct 20 17:15:54 2008 UTC (11 years, 1 month ago) by dmbates
Prepare for new release

Revision 2302 - Directory Listing
Modified Mon Oct 20 17:15:14 2008 UTC (11 years, 1 month ago) by dmbates
Allow inclusion of headers from C++ programs

Revision 2301 - Directory Listing
Modified Fri Oct 17 16:42:17 2008 UTC (11 years, 1 month ago) by dmbates
Prepare for release with only one set of Sparsesuite object files

Revision 2300 - Directory Listing
Modified Fri Oct 17 16:36:02 2008 UTC (11 years, 1 month ago) by dmbates
Consistency with new SparseSuite names

Revision 2299 - Directory Listing
Modified Fri Oct 17 16:07:38 2008 UTC (11 years, 1 month ago) by dmbates
Compile only the UF_long version of SparseSuite but setting UF_long to be int

Revision 2298 - Directory Listing
Modified Fri Oct 17 13:45:12 2008 UTC (11 years, 1 month ago) by mmaechler
AIX also need include <alloca.h>

Revision 2297 - Directory Listing
Modified Fri Oct 17 07:49:06 2008 UTC (11 years, 1 month ago) by mmaechler
more Makevars & Makefile changes from Brian

Revision 2296 - Directory Listing
Modified Thu Oct 16 17:31:48 2008 UTC (11 years, 1 month ago) by mmaechler
oops fix

Revision 2295 - Directory Listing
Modified Thu Oct 16 17:22:12 2008 UTC (11 years, 1 month ago) by mmaechler
ready for release again

Revision 2294 - Directory Listing
Modified Thu Oct 16 17:19:49 2008 UTC (11 years, 1 month ago) by mmaechler
Makefile fixup script from Brian

Revision 2293 - Directory Listing
Modified Thu Oct 16 17:18:41 2008 UTC (11 years, 1 month ago) by mmaechler
move sh- and make- "scripts" to subdirectory scripts/

Revision 2292 - Directory Listing
Modified Thu Oct 16 17:16:33 2008 UTC (11 years, 1 month ago) by mmaechler
try non-(GNU-make) versions of Makefiles

Revision 2291 - Directory Listing
Modified Wed Oct 15 14:57:30 2008 UTC (11 years, 1 month ago) by mmaechler
"propset svn:executable ON" is necessary

Revision 2290 - Directory Listing
Modified Wed Oct 15 14:37:01 2008 UTC (11 years, 1 month ago) by mmaechler
to cleanup; simply using "make" does not quite work

Revision 2289 - Directory Listing
Modified Wed Oct 15 08:08:57 2008 UTC (11 years, 1 month ago) by mmaechler
"Makevars instead of Makefile (w/o configure)"

Revision 2288 - Directory Listing
Modified Tue Oct 14 15:15:38 2008 UTC (11 years, 1 month ago) by mmaechler
Makefile changes for parallel make

Revision 2287 - Directory Listing
Modified Tue Oct 14 15:13:56 2008 UTC (11 years, 1 month ago) by mmaechler
new 'sublibs' target, and related changes to enable 'parallel make'

Revision 2286 - Directory Listing
Modified Tue Oct 14 15:12:19 2008 UTC (11 years, 1 month ago) by mmaechler
save the patch file for the subdirectory */Makefile s - in case

Revision 2285 - Directory Listing
Modified Mon Oct 13 17:52:27 2008 UTC (11 years, 1 month ago) by dmbates
Include the C string declarations.

Revision 2284 - Directory Listing
Modified Mon Oct 6 22:29:59 2008 UTC (11 years, 1 month ago) by dmbates
Modifications for compilation under Windows

Revision 2283 - Directory Listing
Modified Mon Oct 6 15:51:46 2008 UTC (11 years, 1 month ago) by dmbates
remove reference to undefined object

Revision 2282 - Directory Listing
Modified Mon Oct 6 14:05:50 2008 UTC (11 years, 1 month ago) by dmbates
SPQR license information

Revision 2281 - Directory Listing
Modified Sat Oct 4 03:19:14 2008 UTC (11 years, 1 month ago) by dmbates
SparseSuiteQR interface

Revision 2280 - Directory Listing
Modified Fri Oct 3 09:16:25 2008 UTC (11 years, 1 month ago) by mmaechler
update

Revision 2279 - Directory Listing
Modified Fri Oct 3 09:15:54 2008 UTC (11 years, 1 month ago) by mmaechler
prevent seg.fault from invalid object

Revision 2278 - Directory Listing
Modified Thu Oct 2 13:55:36 2008 UTC (11 years, 1 month ago) by mmaechler
better Makefile thanks to Simon Urbanek

Revision 2277 - Directory Listing
Modified Thu Oct 2 01:57:35 2008 UTC (11 years, 1 month ago) by dmbates
Think of a better way of structuring include files

Revision 2276 - Directory Listing
Modified Thu Oct 2 01:56:28 2008 UTC (11 years, 1 month ago) by dmbates
Add dgCMatrix_SPQR and modify other code to allow its compilation and linkage

Revision 2275 - Directory Listing
Modified Wed Oct 1 14:21:22 2008 UTC (11 years, 1 month ago) by dmbates
More adjustments to SuiteSparse configuration

Revision 2274 - Directory Listing
Modified Wed Oct 1 14:07:29 2008 UTC (11 years, 1 month ago) by dmbates
Prepare for new release.  Update license details.

Revision 2273 - Directory Listing
Modified Wed Oct 1 12:34:32 2008 UTC (11 years, 1 month ago) by dmbates
Update SuiteSparse packages, adding SPQR

Revision 2272 - Directory Listing
Modified Wed Sep 24 17:13:45 2008 UTC (11 years, 1 month ago) by dmbates
Update to version 2.2.2 of CSparse

Revision 2271 - Directory Listing
Modified Tue Sep 23 16:39:50 2008 UTC (11 years, 2 months ago) by mmaechler
fix one more (minor) TODO

Revision 2270 - Directory Listing
Modified Tue Sep 23 09:52:19 2008 UTC (11 years, 2 months ago) by mmaechler
fix typos

Revision 2269 - Directory Listing
Modified Mon Sep 22 15:57:00 2008 UTC (11 years, 2 months ago) by mmaechler
belongs to r2268

Revision 2268 - Directory Listing
Modified Mon Sep 22 15:17:12 2008 UTC (11 years, 2 months ago) by mmaechler
less TODOs; notably coercion -> [dln]Matrix; diagonal arithmetic

Revision 2267 - Directory Listing
Modified Wed Sep 17 11:55:57 2008 UTC (11 years, 2 months ago) by mmaechler
fix  <dsCMatrix>[ <ij-matrix> ] <- v

Revision 2266 - Directory Listing
Modified Wed Sep 17 11:52:59 2008 UTC (11 years, 2 months ago) by mmaechler
cosmetic

Revision 2265 - Directory Listing
Modified Fri Sep 12 22:48:18 2008 UTC (11 years, 2 months ago) by dmbates
Clean up dot files.

Revision 2263 - Directory Listing
Modified Fri Sep 12 22:04:15 2008 UTC (11 years, 2 months ago) by dmbates
*** empty log message ***

Revision 2261 - Directory Listing
Modified Thu Sep 11 08:08:45 2008 UTC (11 years, 2 months ago) by mmaechler
cosmetic

Revision 2260 - Directory Listing
Modified Wed Sep 10 16:31:10 2008 UTC (11 years, 2 months ago) by dmbates
Update doxygen comments

Revision 2259 - Directory Listing
Modified Wed Sep 10 07:33:45 2008 UTC (11 years, 2 months ago) by mmaechler
doc updates for diagonalMatrix

Revision 2258 - Directory Listing
Modified Tue Sep 9 07:48:09 2008 UTC (11 years, 2 months ago) by mmaechler
update OUTPUT_DIRECTORY -- adapted to R-forge
and    PROJECT_NUMBER (no minor version)

Revision 2257 - Directory Listing
Modified Mon Sep 8 20:27:22 2008 UTC (11 years, 2 months ago) by mmaechler
read for releasing (upcoming R-devel change)

Revision 2256 - Directory Listing
Modified Fri Sep 5 16:23:39 2008 UTC (11 years, 2 months ago) by mmaechler
drop0(., tol); <Matrix,ANY> changes from JMC; diagU2N()

Revision 2255 - Directory Listing
Modified Sat Aug 30 07:20:33 2008 UTC (11 years, 2 months ago) by mmaechler
all.equal()  TRUE only if e.g. classes match

Revision 2254 - Directory Listing
Modified Thu Aug 28 15:14:08 2008 UTC (11 years, 2 months ago) by mmaechler
tweak example

Revision 2253 - Directory Listing
Modified Thu Aug 28 13:15:55 2008 UTC (11 years, 2 months ago) by mmaechler
add NA-factor example

Revision 2252 - Directory Listing
Modified Thu Aug 28 13:07:07 2008 UTC (11 years, 2 months ago) by mmaechler
fix my own error in fac2sparse()

Revision 2251 - Directory Listing
Modified Thu Aug 28 12:24:45 2008 UTC (11 years, 2 months ago) by mmaechler
do not ignored man/unused-classes.Rd

Revision 2250 - Directory Listing
Modified Thu Aug 28 11:54:53 2008 UTC (11 years, 2 months ago) by mmaechler
all.equal() and Ops for nsparse(Matrix|Vector)

Revision 2249 - Directory Listing
Modified Wed Aug 27 20:35:34 2008 UTC (11 years, 2 months ago) by dmbates
New version of fac2sparse that handles missing values

Revision 2248 - Directory Listing
Modified Tue Aug 26 15:34:16 2008 UTC (11 years, 2 months ago) by mmaechler
also adapt help file about lu() change

Revision 2247 - Directory Listing
Modified Mon Aug 25 16:56:00 2008 UTC (11 years, 2 months ago) by mmaechler
lu(<sparse singular>) gives an error again

Revision 2246 - Directory Listing
Modified Mon Aug 25 16:55:29 2008 UTC (11 years, 2 months ago) by mmaechler
cosmetic

Revision 2245 - Directory Listing
Modified Mon Aug 25 15:06:12 2008 UTC (11 years, 2 months ago) by mmaechler
all.equal() methods; expand(<sparseLU>)

Revision 2244 - Directory Listing
Modified Sat Aug 23 18:09:51 2008 UTC (11 years, 3 months ago) by dmbates


Revision 2243 - Directory Listing
Modified Sat Aug 23 17:59:26 2008 UTC (11 years, 3 months ago) by dmbates
Added expand method and documentation for CHMfactor class

Revision 2242 - Directory Listing
Modified Thu Aug 21 20:51:40 2008 UTC (11 years, 3 months ago) by mmaechler
misc from last week; notably "large" sparseVector`s

Revision 2241 - Directory Listing
Modified Thu Aug 21 18:57:36 2008 UTC (11 years, 3 months ago) by dmbates
Added trivial coercion method for CHMfactor -> pMatrix

Revision 2240 - Directory Listing
Modified Mon Jul 28 21:14:28 2008 UTC (11 years, 3 months ago) by mmaechler
rename factor2sparse.Rnw to sparseModels.Rnw; and add more content

Revision 2239 - Directory Listing
Modified Mon Jul 28 19:26:40 2008 UTC (11 years, 3 months ago) by mmaechler
make diagonalMatrix extend sparseM* instead dense*; dgCMatrix_qrsol(.,., order) {in hidden lm.fit.sparse()}

Revision 2238 - Directory Listing
Modified Fri Jul 25 08:04:22 2008 UTC (11 years, 4 months ago) by mmaechler
get rid of superfluous 'return .. /* -Wall */' lines, producing warnings on Sunstudio cc

Revision 2237 - Directory Listing
Modified Fri Jul 25 06:55:42 2008 UTC (11 years, 4 months ago) by mmaechler
two more solve() cases; tweaks related to diagMatrix

Revision 2236 - Directory Listing
Modified Wed Jul 23 16:48:14 2008 UTC (11 years, 4 months ago) by mmaechler
more validObject() checks, and fixes for "over-allocated" i- and x-slots

Revision 2235 - Directory Listing
Modified Wed Jul 23 10:24:17 2008 UTC (11 years, 4 months ago) by mmaechler
re-activate the Csparse_validate(x) feature of sorting x

Revision 2234 - Directory Listing
Modified Wed Jul 23 10:17:46 2008 UTC (11 years, 4 months ago) by mmaechler
fix in Memcpy call :  s/nz/n+1/

Revision 2233 - Directory Listing
Modified Tue Jul 22 17:43:14 2008 UTC (11 years, 4 months ago) by dmbates
sort columns more carefully in as_cholmod_sparse

Revision 2232 - Directory Listing
Modified Tue Jul 22 17:03:13 2008 UTC (11 years, 4 months ago) by mmaechler
more checking of  solve(unit-triangular <dtCMatrix>)

Revision 2231 - Directory Listing
Modified Tue Jul 22 16:00:25 2008 UTC (11 years, 4 months ago) by dmbates
check for sorted columns in as_cholmod_sparse instead of assuming it

Revision 2230 - Directory Listing
Modified Tue Jul 22 10:47:40 2008 UTC (11 years, 4 months ago) by mmaechler
Matrix_as_cs( check_U = TRUE):  ans->p needs to be allocated; otherwise the
original R object 'x' is changed !

Revision 2229 - Directory Listing
Modified Tue Jul 22 08:35:24 2008 UTC (11 years, 4 months ago) by mmaechler
mention zapsmall() & give example

Revision 2228 - Directory Listing
Modified Mon Jul 21 21:27:38 2008 UTC (11 years, 4 months ago) by dmbates
Use R_alloc for semi-permanent storage when expanding diagonal

Revision 2227 - Directory Listing
Modified Mon Jul 21 19:49:33 2008 UTC (11 years, 4 months ago) by mmaechler
first cut of Matrix_as_cs(.,., check_Udiag) - still bugous

Revision 2226 - Directory Listing
Modified Mon Jul 21 17:15:17 2008 UTC (11 years, 4 months ago) by mmaechler
.trDiagonal() for Csparse diag="N" diagonal

Revision 2225 - Directory Listing
Modified Sat Jul 19 09:44:48 2008 UTC (11 years, 4 months ago) by mmaechler
fix longstanding dimNamesCheck() buglet

Revision 2224 - Directory Listing
Modified Sat Jul 19 09:44:14 2008 UTC (11 years, 4 months ago) by mmaechler
also export the change AS_CHM_(SP|TR) macros

Revision 2223 - Directory Listing
Modified Fri Jul 18 23:04:48 2008 UTC (11 years, 4 months ago) by mmaechler
build sparse_diagU2N() into functions underlying AS_CHM_*()

Revision 2222 - Directory Listing
Modified Fri Jul 18 10:00:25 2008 UTC (11 years, 4 months ago) by mmaechler
tidied a bit

Revision 2221 - Directory Listing
Modified Fri Jul 18 07:54:07 2008 UTC (11 years, 4 months ago) by mmaechler
 "fix" some solve() methods so they won`t use .local()

Revision 2220 - Directory Listing
Modified Thu Jul 17 21:37:21 2008 UTC (11 years, 4 months ago) by dmbates
Correct number of columns for rhs in dtCMatrix_sparse_solve

Revision 2219 - Directory Listing
Modified Thu Jul 17 21:35:10 2008 UTC (11 years, 4 months ago) by dmbates
eye->nz should be -1 for compressed column storage

Revision 2218 - Directory Listing
Modified Thu Jul 17 20:26:19 2008 UTC (11 years, 4 months ago) by dmbates


Revision 2217 - Directory Listing
Modified Thu Jul 17 20:20:26 2008 UTC (11 years, 4 months ago) by dmbates
Replace dtCMatrix_solve by more general dtCMatrix_sparse_solve and add new solve method

Revision 2216 - Directory Listing
Modified Thu Jul 17 20:19:29 2008 UTC (11 years, 4 months ago) by dmbates
Utility csp_eye in case we want to fold Csparse_diagU2N functionality into Matrix_as_cs

Revision 2215 - Directory Listing
Modified Thu Jul 17 18:19:55 2008 UTC (11 years, 4 months ago) by mmaechler
re-vive a year-old unfinished vignette

Revision 2214 - Directory Listing
Modified Thu Jul 17 17:25:35 2008 UTC (11 years, 4 months ago) by mmaechler
cosmetic

Revision 2213 - Directory Listing
Modified Thu Jul 17 16:56:09 2008 UTC (11 years, 4 months ago) by mmaechler
typo ("non-number" :-\ )

Revision 2212 - Directory Listing
Modified Wed Jul 16 22:22:12 2008 UTC (11 years, 4 months ago) by dmbates
fac2sparse gets a drop.unused.levels argument with default TRUE

Revision 2211 - Directory Listing
Modified Wed Jul 16 22:20:54 2008 UTC (11 years, 4 months ago) by dmbates
Export Csparse_diagU2N

Revision 2210 - Directory Listing
Modified Wed Jul 16 22:20:22 2008 UTC (11 years, 4 months ago) by dmbates
Remove vestigial methods based on the parent array; new solve method for signature(a = "dtCMatrix", b = "sparseMatrix")

Revision 2209 - Directory Listing
Modified Mon Jul 14 19:39:39 2008 UTC (11 years, 4 months ago) by mmaechler
bdiag() improvements of last week

Revision 2208 - Directory Listing
Modified Sun Jul 13 15:51:45 2008 UTC (11 years, 4 months ago) by dmbates
Revise wording in error messages

Revision 2207 - Directory Listing
Modified Mon Jul 7 22:34:52 2008 UTC (11 years, 4 months ago) by mmaechler
M[...] <- "sparseVector" etc, see ChangeLog

Revision 2206 - Directory Listing
Modified Wed Jun 25 14:57:02 2008 UTC (11 years, 4 months ago) by mmaechler
bdiag(): use Doug`s better algorithm, fix "bugs"

Revision 2205 - Directory Listing
Modified Tue Jun 17 16:15:20 2008 UTC (11 years, 5 months ago) by mmaechler
rm old option of using "l" or "u" in uplo-slot

Revision 2204 - Directory Listing
Modified Sat Jun 14 20:10:03 2008 UTC (11 years, 5 months ago) by mmaechler
forgotten update

Revision 2203 - Directory Listing
Modified Sat Jun 14 20:09:17 2008 UTC (11 years, 5 months ago) by mmaechler
C based encodeInd() -> faster indexing; any()/all() for nsparse; printSpMatrix2(); show(<diag>)

Revision 2202 - Directory Listing
Modified Mon Jun 9 21:36:21 2008 UTC (11 years, 5 months ago) by mmaechler
copyClass(., check) and fast  dgC -> dtC

Revision 2201 - Directory Listing
Modified Mon Jun 9 16:00:23 2008 UTC (11 years, 5 months ago) by mmaechler
add regression test for selectMethod(coerce, .) bug fix

Revision 2200 - Directory Listing
Modified Sat Jun 7 21:05:55 2008 UTC (11 years, 5 months ago) by mmaechler
new; testing that make/MAKE is a GNU one

Revision 2199 - Directory Listing
Modified Mon Jun 2 16:09:12 2008 UTC (11 years, 5 months ago) by mmaechler
changes related to 2197; also one small step at reducing the ambiguity warnings

Revision 2198 - Directory Listing
Modified Mon Jun 2 16:07:31 2008 UTC (11 years, 5 months ago) by mmaechler
use options(warn = 1) - for the many "Ambiguous .." warnings

Revision 2197 - Directory Listing
Modified Mon Jun 2 14:34:42 2008 UTC (11 years, 5 months ago) by mmaechler
fix diagMatrix-related thinkos

Revision 2196 - Directory Listing
Modified Fri May 30 21:49:50 2008 UTC (11 years, 5 months ago) by mmaechler
Ops methods for <diag> o <dMatrix>

Revision 2195 - Directory Listing
Modified Fri May 30 15:08:31 2008 UTC (11 years, 5 months ago) by dmbates
Use Calloc not Alloca for potentially large allocations in dgeMatrix_exp

Revision 2194 - Directory Listing
Modified Tue May 20 06:44:19 2008 UTC (11 years, 6 months ago) by mmaechler
also import "Ops" (as of May 7 !)

Revision 2193 - Directory Listing
Modified Mon May 5 06:56:21 2008 UTC (11 years, 6 months ago) by mmaechler
less TODO; more "Done"

Revision 2192 - Directory Listing
Modified Thu May 1 08:21:47 2008 UTC (11 years, 6 months ago) by mmaechler
fix  D[cbind(i,i)] <- v  for unit-diagonal D

Revision 2191 - Directory Listing
Modified Wed Apr 30 06:32:09 2008 UTC (11 years, 6 months ago) by mmaechler
add missing \alias{} for group method and other methods that 2.7.0 did not show missing

Revision 2190 - Directory Listing
Modified Mon Apr 28 16:24:15 2008 UTC (11 years, 6 months ago) by mmaechler
cholMat(); update dpo coercion tests

Revision 2189 - Directory Listing
Modified Mon Apr 28 15:09:58 2008 UTC (11 years, 6 months ago) by mmaechler
dpo <-> dpp coercion withOUT check for pos.def

Revision 2188 - Directory Listing
Modified Mon Apr 28 13:42:12 2008 UTC (11 years, 6 months ago) by mmaechler
make checkMatrix() work for R 2.6.x

Revision 2187 - Directory Listing
Modified Mon Apr 28 13:41:53 2008 UTC (11 years, 6 months ago) by mmaechler
disable setIs(..) now we have setAs(..) instead

Revision 2186 - Directory Listing
Modified Mon Apr 28 12:37:01 2008 UTC (11 years, 6 months ago) by mmaechler
checkMatrix() now checks the [dl]sparseMatrix -> nMatrix coercion

Revision 2185 - Directory Listing
Modified Sat Apr 26 20:33:16 2008 UTC (11 years, 6 months ago) by mmaechler
more <Ops> methods, notably for lMatrix & nMatrix

Revision 2184 - Directory Listing
Modified Sat Apr 26 20:32:39 2008 UTC (11 years, 6 months ago) by mmaechler
define image()-methods on higher level [ln]sparseMatrix

Revision 2183 - Directory Listing
Modified Thu Apr 24 10:58:51 2008 UTC (11 years, 7 months ago) by mmaechler
slight change in class-definition of [d]diMatrix; better pos.definite checks for dpo* and dpp*

Revision 2182 - Directory Listing
Modified Thu Apr 24 10:57:08 2008 UTC (11 years, 7 months ago) by mmaechler
expm() methods for diagonal/triangular/symmetric

Revision 2181 - Directory Listing
Modified Thu Apr 24 09:14:58 2008 UTC (11 years, 7 months ago) by mmaechler
fast special case n == 1

Revision 2180 - Directory Listing
Modified Thu Apr 24 07:38:52 2008 UTC (11 years, 7 months ago) by mmaechler
typo

Revision 2179 - Directory Listing
Modified Thu Apr 24 06:33:03 2008 UTC (11 years, 7 months ago) by mmaechler
dsy -> dpo: use setAs(), no longer setIs()

Revision 2178 - Directory Listing
Modified Thu Apr 24 06:31:40 2008 UTC (11 years, 7 months ago) by mmaechler
deal with integer 'matrix' in crossprod

Revision 2177 - Directory Listing
Modified Thu Apr 24 06:30:21 2008 UTC (11 years, 7 months ago) by mmaechler
Diagonal() in example

Revision 2176 - Directory Listing
Modified Thu Apr 24 06:30:00 2008 UTC (11 years, 7 months ago) by mmaechler
checkMatrix() a bit more for logical-triangular

Revision 2175 - Directory Listing
Modified Wed Apr 23 11:23:50 2008 UTC (11 years, 7 months ago) by mmaechler
more determinant(); MANY consistency cleanups, found by checkMatrix(); .. (see ChangeLog)

Revision 2174 - Directory Listing
Modified Wed Apr 23 11:21:37 2008 UTC (11 years, 7 months ago) by mmaechler
+ lsM(), checkMatrix(), ..

Revision 2173 - Directory Listing
Modified Wed Apr 23 11:20:58 2008 UTC (11 years, 7 months ago) by mmaechler
get rid of pre-2.6.0 part; fix !<dtrMatrix>

Revision 2172 - Directory Listing
Modified Wed Apr 23 11:20:38 2008 UTC (11 years, 7 months ago) by mmaechler
get rid of pre-2.6.0 part

Revision 2171 - Directory Listing
Modified Wed Apr 23 10:26:38 2008 UTC (11 years, 7 months ago) by mmaechler
additions, notably image()

Revision 2170 - Directory Listing
Modified Mon Apr 21 08:20:08 2008 UTC (11 years, 7 months ago) by mmaechler
validity for "ltT" & "lsT": use more string tTvalidate

Revision 2169 - Directory Listing
Modified Mon Apr 21 06:25:04 2008 UTC (11 years, 7 months ago) by mmaechler
image() with better lwd default ... {and not depending on 2.7.0  dev.size()}

Revision 2168 - Directory Listing
Modified Mon Apr 14 10:41:14 2008 UTC (11 years, 7 months ago) by mmaechler
new image() method: do *not* use abs(.) by default, but colors

Revision 2167 - Directory Listing
Modified Mon Apr 7 13:57:06 2008 UTC (11 years, 7 months ago) by mmaechler
require R 2.6.0

Revision 2166 - Directory Listing
Modified Wed Apr 2 15:06:02 2008 UTC (11 years, 7 months ago) by maechler
move declaration such that old gcc does not complain

Revision 2165 - Directory Listing
Modified Sat Mar 29 21:40:18 2008 UTC (11 years, 7 months ago) by maechler
drop "double"

Revision 2164 - Directory Listing
Modified Sat Mar 29 14:46:11 2008 UTC (11 years, 7 months ago) by maechler
check base::rcond for now

Revision 2163 - Directory Listing
Modified Sat Mar 29 14:45:18 2008 UTC (11 years, 7 months ago) by maechler
evade newest CMD check warnings

Revision 2162 - Directory Listing
Modified Sat Mar 29 14:42:36 2008 UTC (11 years, 7 months ago) by maechler
typo

Revision 2161 - Directory Listing
Modified Sat Mar 29 14:08:25 2008 UTC (11 years, 7 months ago) by maechler
make work with 2.7.0 version that do not have rcond

Revision 2160 - Directory Listing
Modified Sat Mar 29 14:07:59 2008 UTC (11 years, 7 months ago) by maechler
update: Goal: make this *the* (extended) Introduction (get rid of old one eventually)

Revision 2159 - Directory Listing
Modified Sat Mar 29 08:09:05 2008 UTC (11 years, 7 months ago) by maechler
prepare release 0.999375-9

Revision 2158 - Directory Listing
Modified Fri Mar 28 17:07:54 2008 UTC (11 years, 7 months ago) by maechler
rcond(., norm) instead of (., type)

Revision 2157 - Directory Listing
Modified Tue Mar 25 15:00:01 2008 UTC (11 years, 8 months ago) by maechler
BunchKaufman(); fix <ddi> o <numeric> bug; Version++

Revision 2156 - Directory Listing
Modified Tue Mar 25 09:26:59 2008 UTC (11 years, 8 months ago) by maechler
trivial update of Csparse to version 2.2.1 (Nov.2007)

Revision 2155 - Directory Listing
Modified Sun Mar 23 16:41:02 2008 UTC (11 years, 8 months ago) by bates
Correct the call to chm_factor_to_SEXP (wrong kind of free used).

Revision 2154 - Directory Listing
Modified Sat Mar 22 21:23:12 2008 UTC (11 years, 8 months ago) by maechler
no longer use "non-standard" chol() and qr() generic

Revision 2153 - Directory Listing
Modified Sat Mar 22 21:22:41 2008 UTC (11 years, 8 months ago) by maechler
dsCMatrix_LDL_D() now also uses internal_chm_factor()

Revision 2152 - Directory Listing
Modified Sat Mar 22 16:09:05 2008 UTC (11 years, 8 months ago) by maechler
helpfile from last millennium or so

Revision 2151 - Directory Listing
Modified Thu Mar 20 23:31:22 2008 UTC (11 years, 8 months ago) by maechler
several cosmetics

Revision 2150 - Directory Listing
Modified Thu Mar 20 23:30:10 2008 UTC (11 years, 8 months ago) by maechler
add two spatial sparse examples from Roger Bivand

Revision 2149 - Directory Listing
Modified Thu Mar 20 23:29:09 2008 UTC (11 years, 8 months ago) by maechler
oops; forgotten to svn add / commit, about a week ago

Revision 2148 - Directory Listing
Modified Thu Mar 20 21:29:57 2008 UTC (11 years, 8 months ago) by bates
Cleaned up code in dsCMatrix.c; don't cache factorizations with Imult nonzero

Revision 2147 - Directory Listing
Modified Wed Mar 19 15:34:36 2008 UTC (11 years, 8 months ago) by bates
Hidden function ldetL2up to evaluate log-determinant of updated Cholesky factor for a vector of multiples of the identity

Revision 2146 - Directory Listing
Modified Wed Mar 19 14:03:07 2008 UTC (11 years, 8 months ago) by bates
Use CHOLMOD to copy factor in CHMfactor_update

Revision 2145 - Directory Listing
Modified Wed Mar 19 14:00:47 2008 UTC (11 years, 8 months ago) by bates
Add Imult argument to Cholesky

Revision 2144 - Directory Listing
Modified Tue Mar 18 23:08:12 2008 UTC (11 years, 8 months ago) by maechler
.symDiagonal(), is.na() and more diagonalMatrix "Ops"

Revision 2143 - Directory Listing
Modified Tue Mar 18 21:46:41 2008 UTC (11 years, 8 months ago) by maechler
some experimental determinant()s {-> tests/factorizing.R should work!}

Revision 2142 - Directory Listing
Modified Tue Mar 18 15:02:23 2008 UTC (11 years, 8 months ago) by bates
update method for CHMfactor; change return type of exported C function chm_factor_update

Revision 2141 - Directory Listing
Modified Tue Mar 18 14:19:44 2008 UTC (11 years, 8 months ago) by maechler
mini change and some timing for det() variants

Revision 2140 - Directory Listing
Modified Tue Mar 18 01:03:48 2008 UTC (11 years, 8 months ago) by bates
Added chm_factor_update, documentation and tests

Revision 2139 - Directory Listing
Modified Mon Mar 17 23:25:31 2008 UTC (11 years, 8 months ago) by maechler
Changelog on CHOLMOD update

Revision 2138 - Directory Listing
Modified Mon Mar 17 23:23:30 2008 UTC (11 years, 8 months ago) by maechler
update to CHOLMOD version 1.6 (Nov.2007)

Revision 2137 - Directory Listing
Modified Mon Mar 17 22:21:24 2008 UTC (11 years, 8 months ago) by maechler
my fast determinant(<dsC..>) versions

Revision 2136 - Directory Listing
Modified Mon Mar 17 22:20:29 2008 UTC (11 years, 8 months ago) by maechler
more methods for subclasses, against "ambiguity" warnings

Revision 2135 - Directory Listing
Modified Mon Mar 17 19:23:57 2008 UTC (11 years, 8 months ago) by bates
Prepare for new release with chm_factor_ldetL2, etc.

Revision 2134 - Directory Listing
Modified Mon Mar 17 18:53:43 2008 UTC (11 years, 8 months ago) by bates
Log-determinant of the parent matrix from a CHMfactor object as chm_factor_ldetL2; documentation and support

Revision 2133 - Directory Listing
Modified Sat Mar 15 18:56:50 2008 UTC (11 years, 8 months ago) by maechler
fix "chol" signatures (such as no .local(..) wrappers are produced}

Revision 2132 - Directory Listing
Modified Fri Mar 14 23:32:33 2008 UTC (11 years, 8 months ago) by maechler
Announcement moved to inst/doc

Revision 2131 - Directory Listing
Modified Fri Mar 14 23:31:47 2008 UTC (11 years, 8 months ago) by maechler
slightly extended from Doug`s improvement

Revision 2130 - Directory Listing
Modified Fri Mar 14 19:27:16 2008 UTC (11 years, 8 months ago) by maechler
back-compatibility: as(., "dsCMatrix") with one warning per session

Revision 2129 - Directory Listing
Modified Thu Mar 13 23:37:12 2008 UTC (11 years, 8 months ago) by maechler
note

Revision 2128 - Directory Listing
Modified Thu Mar 13 23:08:34 2008 UTC (11 years, 8 months ago) by maechler
fix diagonal <-> sparse  buglets

Revision 2127 - Directory Listing
Modified Fri Mar 7 14:08:04 2008 UTC (11 years, 8 months ago) by maechler
fix the infamous expm() bug also in "Matrix" (duh!)

Revision 2126 - Directory Listing
Modified Fri Mar 7 07:59:46 2008 UTC (11 years, 8 months ago) by maechler
ready for releasing 0.999375-5

Revision 2125 - Directory Listing
Modified Fri Mar 7 07:58:26 2008 UTC (11 years, 8 months ago) by maechler
diagN2U() for preserving (unit-)triangularity in sparse (triang.)matrix multiplication

Revision 2124 - Directory Listing
Modified Thu Mar 6 08:19:40 2008 UTC (11 years, 8 months ago) by maechler
need  La_(norm|rcond)_type  definitions also for R-devel  {for now}

Revision 2123 - Directory Listing
Modified Wed Mar 5 08:44:52 2008 UTC (11 years, 8 months ago) by maechler
replace many "callGeneric(U, V)" by direct <FUN>(U, V)

Revision 2122 - Directory Listing
Modified Tue Mar 4 22:14:49 2008 UTC (11 years, 8 months ago) by maechler
forgotten update

Revision 2121 - Directory Listing
Modified Tue Mar 4 22:01:33 2008 UTC (11 years, 8 months ago) by maechler
+ forgotten Rversion.h

Revision 2120 - Directory Listing
Modified Tue Mar 4 21:44:41 2008 UTC (11 years, 8 months ago) by maechler
use diagU2N in more places; also new Tsparse_diagU2N()

Revision 2119 - Directory Listing
Modified Tue Mar 4 21:44:04 2008 UTC (11 years, 8 months ago) by maechler
use CALLDEF and RREGDEF macros

Revision 2118 - Directory Listing
Modified Tue Mar 4 21:42:55 2008 UTC (11 years, 8 months ago) by maechler
remove unused dtTMatrix_as_dgCMatrix

Revision 2117 - Directory Listing
Modified Mon Mar 3 14:35:25 2008 UTC (11 years, 8 months ago) by maechler
s/norm_type/La_norm_type/ in order to move to R-devel

Revision 2116 - Directory Listing
Modified Sat Feb 23 09:25:08 2008 UTC (11 years, 9 months ago) by maechler
for debugging (and excluded from pk via .Rbuildignore)

Revision 2115 - Directory Listing
Modified Sat Feb 23 09:23:17 2008 UTC (11 years, 9 months ago) by maechler
+ forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band allowing simplified methods;  Matrix() and many man/*Rd : replace many as(*, <specific>) by as(*, <virtual superclass>)

Revision 2114 - Directory Listing
Modified Mon Feb 18 17:15:41 2008 UTC (11 years, 9 months ago) by bates
-Wall additions

Revision 2113 - Directory Listing
Modified Mon Feb 18 08:27:41 2008 UTC (11 years, 9 months ago) by maechler
miscellaneous cleanup; typically indexing and coercion

Revision 2112 - Directory Listing
Modified Mon Feb 18 08:24:46 2008 UTC (11 years, 9 months ago) by maechler
new symmpart(), skewpart()

Revision 2111 - Directory Listing
Modified Thu Jan 31 17:06:57 2008 UTC (11 years, 9 months ago) by maechler
any(as.logical(i)) since any(<double)  now warns

Revision 2110 - Directory Listing
Modified Sat Jan 26 20:59:26 2008 UTC (11 years, 9 months ago) by maechler
more indexing/subassignment & testing those

Revision 2109 - Directory Listing
Modified Sat Jan 26 20:18:03 2008 UTC (11 years, 9 months ago) by maechler
new .Call(Tsparse_to_tCsparse,*)

Revision 2108 - Directory Listing
Modified Fri Jan 25 11:14:32 2008 UTC (11 years, 9 months ago) by maechler
faster arithmetic for matching sparse triangular

Revision 2107 - Directory Listing
Modified Fri Jan 25 10:39:25 2008 UTC (11 years, 9 months ago) by maechler
forgotten "svn add" for r4904 (Schur class etc)

Revision 2106 - Directory Listing
Modified Wed Jan 23 09:36:04 2008 UTC (11 years, 10 months ago) by maechler
+ "Schur" class and many more Schur methods

Revision 2105 - Directory Listing
Modified Tue Jan 15 10:16:29 2008 UTC (11 years, 10 months ago) by maechler
solve(<CHMfactor>, <numeric>) and related

Revision 2104 - Directory Listing
Modified Sat Jan 12 16:09:01 2008 UTC (11 years, 10 months ago) by bates
Documentation errors caught by doxygen

Revision 2103 - Directory Listing
Modified Fri Jan 11 22:39:21 2008 UTC (11 years, 10 months ago) by maechler
update on rcond()

Revision 2102 - Directory Listing
Modified Fri Jan 11 22:35:25 2008 UTC (11 years, 10 months ago) by maechler
fix rcond(..) infinite recursion

Revision 2101 - Directory Listing
Modified Wed Jan 2 17:47:44 2008 UTC (11 years, 10 months ago) by bates
Create documentation in a parallel R-forge directory

Revision 2100 - Directory Listing
Modified Wed Jan 2 17:47:09 2008 UTC (11 years, 10 months ago) by bates
Corrected function documentation

Revision 2099 - Directory Listing
Modified Fri Dec 21 21:51:40 2007 UTC (11 years, 11 months ago) by bates
A working Doxyfile - still needs tuning

Revision 2098 - Directory Listing
Modified Sun Dec 9 00:35:14 2007 UTC (11 years, 11 months ago) by maechler
indexing M[i], for *vector* i; and tests for those, see ChangeLog

Revision 2097 - Directory Listing
Modified Sat Dec 8 13:36:13 2007 UTC (11 years, 11 months ago) by bates
Minor code cleanup in xtabs

Revision 2096 - Directory Listing
Modified Fri Dec 7 17:44:44 2007 UTC (11 years, 11 months ago) by maechler
+ cov2cor(); updates to nearPD()+doc; others

Revision 2095 - Directory Listing
Modified Wed Dec 5 17:57:24 2007 UTC (11 years, 11 months ago) by maechler
s/sxtabs/xtabs/ + fix + doc(incl example)

Revision 2094 - Directory Listing
Modified Tue Dec 4 23:41:41 2007 UTC (11 years, 11 months ago) by bates
Added sparse xtabs; not yet documented and may change

Revision 2093 - Directory Listing
Modified Thu Nov 22 15:54:17 2007 UTC (12 years ago) by maechler
update 'License' to conform to Kurt's standards

Revision 2086 - Directory Listing
Modified Fri Oct 26 08:09:55 2007 UTC (12 years ago) by maechler
replace  all(lapply(...)) with an identical(..) test

Revision 2083 - Directory Listing
Modified Mon Oct 8 13:41:45 2007 UTC (12 years, 1 month ago) by maechler
SHLIB_EXT also needed in some Debian circumstances

Revision 2082 - Directory Listing
Modified Sat Oct 6 22:09:19 2007 UTC (12 years, 1 month ago) by maechler
harmless typo

Revision 2081 - Directory Listing
Modified Sat Oct 6 22:01:45 2007 UTC (12 years, 1 month ago) by maechler
some more dense solve() / lu()

Revision 2073 - Directory Listing
Modified Wed Sep 26 16:17:00 2007 UTC (12 years, 1 month ago) by maechler
matrix %*% pMatrix - bug fix (and a bit more)

Revision 2072 - Directory Listing
Modified Wed Sep 26 16:16:13 2007 UTC (12 years, 1 month ago) by maechler
rcond() and qr.R() - unfinished (need TESTING; see FIXME)

Revision 2069 - Directory Listing
Modified Sun Sep 23 17:35:17 2007 UTC (12 years, 2 months ago) by bates


Revision 2068 - Directory Listing
Modified Sun Sep 23 17:32:00 2007 UTC (12 years, 2 months ago) by bates
Check R version before defining generics for primitives

Revision 2067 - Directory Listing
Modified Wed Sep 12 14:35:36 2007 UTC (12 years, 2 months ago) by maechler
document chol() and qr() S4 generic; move all chol() method docs to chol.Rd

Revision 2066 - Directory Listing
Modified Wed Sep 12 12:51:19 2007 UTC (12 years, 2 months ago) by maechler
add to example

Revision 2064 - Directory Listing
Modified Tue Sep 11 21:23:13 2007 UTC (12 years, 2 months ago) by bates
Code used dgees but docs said dgeesx.

Revision 2063 - Directory Listing
Modified Sat Sep 1 21:11:49 2007 UTC (12 years, 2 months ago) by maechler
test output (for last commit)

Revision 2062 - Directory Listing
Modified Sat Sep 1 21:06:52 2007 UTC (12 years, 2 months ago) by maechler
more  [<- (i=missing,j=ANY, value=Matrix) etc

Revision 2061 - Directory Listing
Modified Sat Sep 1 20:37:11 2007 UTC (12 years, 2 months ago) by maechler
make alloca working for Sun

Revision 2056 - Directory Listing
Modified Thu Aug 16 16:42:10 2007 UTC (12 years, 3 months ago) by maechler
add explicit ... to function args in certain setMethod("[" ..) calls  {for R-devel}

Revision 2055 - Directory Listing
Modified Thu Aug 16 15:48:27 2007 UTC (12 years, 3 months ago) by maechler
minor update

Revision 2054 - Directory Listing
Modified Thu Aug 16 14:17:58 2007 UTC (12 years, 3 months ago) by maechler
use switch() and make work for pattern matrices

Revision 2052 - Directory Listing
Modified Wed Aug 15 13:33:19 2007 UTC (12 years, 3 months ago) by maechler
finally can replace s/ncol = n/ncol/ in diag() methods

Revision 2051 - Directory Listing
Modified Tue Aug 14 22:23:53 2007 UTC (12 years, 3 months ago) by bates
*** empty log message ***

Revision 2050 - Directory Listing
Modified Tue Aug 14 22:23:33 2007 UTC (12 years, 3 months ago) by bates
*** empty log message ***

Revision 2049 - Directory Listing
Modified Tue Aug 14 22:22:24 2007 UTC (12 years, 3 months ago) by bates
Remove deprecated function writeHB and its methods; switch writeMM to use CHOLMOD code; repair readMM

Revision 2048 - Directory Listing
Modified Tue Aug 14 15:09:10 2007 UTC (12 years, 3 months ago) by maechler
new nearPD() {from Jens` nearcor()}; some TODO cleanup

Revision 2045 - Directory Listing
Modified Tue Aug 14 13:07:10 2007 UTC (12 years, 3 months ago) by bates
declare alloca

Revision 2043 - Directory Listing
Modified Sat Aug 11 03:18:26 2007 UTC (12 years, 3 months ago) by maechler
image() new defaults + docs; misc

Revision 2041 - Directory Listing
Modified Tue Aug 7 11:09:11 2007 UTC (12 years, 3 months ago) by bates
*** empty log message ***

Revision 2039 - Directory Listing
Modified Mon Aug 6 18:49:27 2007 UTC (12 years, 3 months ago) by maechler
solve, %*% etc and correct test

Revision 2038 - Directory Listing
Modified Mon Aug 6 16:43:03 2007 UTC (12 years, 3 months ago) by bates
Duplicate the contents of the RHS before Lapack call

Revision 2037 - Directory Listing
Modified Mon Aug 6 12:56:56 2007 UTC (12 years, 3 months ago) by bates
Change R_cholmod_printf in stubs as well as in sources

Revision 2036 - Directory Listing
Modified Mon Aug 6 12:03:47 2007 UTC (12 years, 3 months ago) by maechler
add more x

Revision 2025 - Directory Listing
Modified Thu Aug 2 08:48:44 2007 UTC (12 years, 3 months ago) by maechler
R_cholmod_printf() instead of Rprintf()  just so pointers match

Revision 2024 - Directory Listing
Modified Thu Aug 2 07:22:44 2007 UTC (12 years, 3 months ago) by maechler
release date

Revision 2023 - Directory Listing
Modified Wed Aug 1 20:26:21 2007 UTC (12 years, 3 months ago) by maechler
+ missing \alias{..}

Revision 2020 - Directory Listing
Modified Wed Aug 1 15:55:52 2007 UTC (12 years, 3 months ago) by bates
*** empty log message ***

Revision 2019 - Directory Listing
Modified Wed Aug 1 15:44:06 2007 UTC (12 years, 3 months ago) by bates
Change API for numeric_as_chm_dense and N_AS_CHM_DN

Revision 2018 - Directory Listing
Modified Wed Aug 1 15:22:05 2007 UTC (12 years, 3 months ago) by maechler
fix <dge> %*% <dtr> + misc.cosmetics

Revision 2017 - Directory Listing
Modified Wed Aug 1 15:18:25 2007 UTC (12 years, 3 months ago) by maechler
mention a few times that people should typically rather use  chol(.)

Revision 2015 - Directory Listing
Modified Wed Jul 25 14:17:24 2007 UTC (12 years, 4 months ago) by maechler
(mostly) patches from Brian re potential changes in R-devel

Revision 2011 - Directory Listing
Modified Fri Jul 20 12:56:10 2007 UTC (12 years, 4 months ago) by maechler
fix for "Math2" digits="missing"

Revision 2008 - Directory Listing
Modified Thu Jul 19 19:47:59 2007 UTC (12 years, 4 months ago) by bates
*** empty log message ***

Revision 2007 - Directory Listing
Modified Thu Jul 19 19:45:48 2007 UTC (12 years, 4 months ago) by bates
Export triplet_to_sparse, documentation, use typedefs

Revision 2005 - Directory Listing
Modified Wed Jul 18 14:46:20 2007 UTC (12 years, 4 months ago) by maechler
norm() for sparse; systematic checking of norm() and all "Summary" methods

Revision 1987 - Directory Listing
Modified Tue Jul 10 19:31:18 2007 UTC (12 years, 4 months ago) by bates
*** empty log message ***

Revision 1986 - Directory Listing
Modified Tue Jul 10 19:30:28 2007 UTC (12 years, 4 months ago) by bates
Fix a "thinko" in the new code for dgeMatrix_colsums

Revision 1975 - Directory Listing
Modified Mon Jul 9 20:52:50 2007 UTC (12 years, 4 months ago) by bates
*** empty log message ***

Revision 1974 - Directory Listing
Modified Mon Jul 9 20:45:14 2007 UTC (12 years, 4 months ago) by bates
Untangle horrible code in dgeMatrix_colsums to fix a subtle bug (Kurt Hornik and Ingo Feinerer)

Revision 1973 - Directory Listing
Modified Mon Jul 9 19:43:42 2007 UTC (12 years, 4 months ago) by maechler
"cleaned" dgeMatrix_colsums() - but did not solve the bug

Revision 1968 - Directory Listing
Modified Sat Jul 7 22:49:12 2007 UTC (12 years, 4 months ago) by maechler
Rsparse validation methods; finally make use of slot_dup() macro; fix R_to_C (symmetric)

Revision 1967 - Directory Listing
Modified Sat Jul 7 22:47:52 2007 UTC (12 years, 4 months ago) by maechler
require 2.5.1

Revision 1966 - Directory Listing
Modified Sat Jul 7 20:07:58 2007 UTC (12 years, 4 months ago) by bates
*** empty log message ***

Revision 1965 - Directory Listing
Modified Sat Jul 7 20:06:05 2007 UTC (12 years, 4 months ago) by bates
Include cholmod_matrixops.h for declaration of cholmod_symmetry

Revision 1964 - Directory Listing
Modified Sat Jul 7 18:26:22 2007 UTC (12 years, 4 months ago) by bates
*** empty log message ***

Revision 1963 - Directory Listing
Modified Sat Jul 7 18:24:16 2007 UTC (12 years, 4 months ago) by bates
Prepare for new, bug-fix, release

Revision 1962 - Directory Listing
Modified Sat Jul 7 18:23:28 2007 UTC (12 years, 4 months ago) by bates
Slots already in RsparseMatrix were redefined in lgRMatrix

Revision 1961 - Directory Listing
Modified Fri Jul 6 21:33:47 2007 UTC (12 years, 4 months ago) by maechler
ready to release 0.999375-0

Revision 1960 - Directory Listing
Modified Fri Jul 6 16:54:43 2007 UTC (12 years, 4 months ago) by maechler
merge 'branches/Matrix-APIchange' back into the trunk

Revision 1948 - Directory Listing
Modified Thu Jul 5 08:42:05 2007 UTC (12 years, 4 months ago) by maechler
yet another example

Revision 1947 - Directory Listing
Modified Thu Jul 5 08:22:00 2007 UTC (12 years, 4 months ago) by maechler
printSpMatrix() {exported, extended, documented}

Revision 1945 - Directory Listing
Modified Wed Jul 4 18:07:07 2007 UTC (12 years, 4 months ago) by maechler
not dropping dimnames (notably of sparse matrices)

Revision 1933 - Directory Listing
Modified Sat Jun 30 09:05:11 2007 UTC (12 years, 4 months ago) by maechler
add session- and hardware-info to Comparisons

Revision 1932 - Directory Listing
Modified Fri Jun 29 16:43:47 2007 UTC (12 years, 4 months ago) by maechler
Math/Math2: setGeneric adaption for todays` R-devel

Revision 1927 - Directory Listing
Modified Wed Jun 27 19:57:16 2007 UTC (12 years, 4 months ago) by maechler
update to all three vignettes

Revision 1922 - Directory Listing
Modified Sat Jun 23 18:08:48 2007 UTC (12 years, 5 months ago) by maechler
xsparseVector etc (smarter coercions)

Revision 1921 - Directory Listing
Modified Sat Jun 23 18:08:17 2007 UTC (12 years, 5 months ago) by maechler
colSums() etc update (fix for lgC*)

Revision 1920 - Directory Listing
Modified Sat Jun 23 09:43:30 2007 UTC (12 years, 5 months ago) by maechler
use template instead of huge macro for [diln]gcMatrix_colSums

Revision 1917 - Directory Listing
Modified Thu Jun 21 21:32:39 2007 UTC (12 years, 5 months ago) by maechler
update + comment

Revision 1911 - Directory Listing
Modified Tue Jun 19 16:16:58 2007 UTC (12 years, 5 months ago) by maechler
colSums, ... rowMeans for all Matrices; notably sparse ones via [diln]gCMatrix_colSums C code

Revision 1909 - Directory Listing
Modified Mon Jun 18 16:15:49 2007 UTC (12 years, 5 months ago) by bates


Revision 1908 - Directory Listing
Modified Mon Jun 18 16:14:06 2007 UTC (12 years, 5 months ago) by bates
Modified dgCMatrix_colSums for sparseVector result

Revision 1907 - Directory Listing
Modified Mon Jun 18 16:12:45 2007 UTC (12 years, 5 months ago) by bates
Added Matrix_lengthSym

Revision 1906 - Directory Listing
Modified Sat Jun 16 19:26:30 2007 UTC (12 years, 5 months ago) by maechler
no longer use backquote (" ` ") in messages

Revision 1905 - Directory Listing
Modified Sat Jun 16 18:37:48 2007 UTC (12 years, 5 months ago) by maechler
misc. cleanup

Revision 1904 - Directory Listing
Modified Sat Jun 16 18:34:05 2007 UTC (12 years, 5 months ago) by maechler
kronecker buglet fix

Revision 1903 - Directory Listing
Modified Sat Jun 16 18:31:51 2007 UTC (12 years, 5 months ago) by maechler
+ print(<sparse>, extra args)

Revision 1902 - Directory Listing
Modified Sat Jun 16 15:54:54 2007 UTC (12 years, 5 months ago) by bates


Revision 1901 - Directory Listing
Modified Sat Jun 16 15:52:56 2007 UTC (12 years, 5 months ago) by bates
added dgCMatrix_colSums for [col,row][Sums,Means]

Revision 1900 - Directory Listing
Modified Sat Jun 16 11:54:40 2007 UTC (12 years, 5 months ago) by maechler
add qr() based LS example, comparing solution with Chol() one.

Revision 1899 - Directory Listing
Modified Fri Jun 15 23:17:45 2007 UTC (12 years, 5 months ago) by bates


Revision 1898 - Directory Listing
Modified Fri Jun 15 23:13:43 2007 UTC (12 years, 5 months ago) by bates
Don't need an interactions class.  Use the row names to store the levels - duh

Revision 1897 - Directory Listing
Modified Fri Jun 15 18:22:25 2007 UTC (12 years, 5 months ago) by bates


Revision 1896 - Directory Listing
Modified Fri Jun 15 18:20:26 2007 UTC (12 years, 5 months ago) by bates
draft "indicators" class

Revision 1895 - Directory Listing
Modified Fri Jun 15 18:19:23 2007 UTC (12 years, 5 months ago) by bates
added lm.fit.sparse (unexported), coercion of "factor" to dgCMatrix and dgCMatrix_cholsol

Revision 1894 - Directory Listing
Modified Thu Jun 14 10:53:07 2007 UTC (12 years, 5 months ago) by maechler
fix last-second typo

Revision 1893 - Directory Listing
Modified Thu Jun 14 10:46:10 2007 UTC (12 years, 5 months ago) by maechler
more strict validity checking for Csparse

Revision 1887 - Directory Listing
Modified Thu Jun 7 09:04:34 2007 UTC (12 years, 5 months ago) by maechler
few misc.

Revision 1886 - Directory Listing
Modified Thu Jun 7 09:03:40 2007 UTC (12 years, 5 months ago) by maechler
another callGeneric fix

Revision 1885 - Directory Listing
Modified Thu Jun 7 08:54:16 2007 UTC (12 years, 5 months ago) by maechler
+ another kronecker method [against infinite recursion]

Revision 1884 - Directory Listing
Modified Thu Jun 7 08:51:52 2007 UTC (12 years, 5 months ago) by maechler
modularize Makefile(.win)  [checked on Uwe`s server]

Revision 1883 - Directory Listing
Modified Wed Jun 6 14:24:58 2007 UTC (12 years, 5 months ago) by maechler
use correct "na.rm" default in all() and any(); tests for that

Revision 1882 - Directory Listing
Modified Wed Jun 6 14:18:12 2007 UTC (12 years, 5 months ago) by maechler
a bit more sync between the two Makefiles

Revision 1879 - Directory Listing
Modified Tue Jun 5 17:10:33 2007 UTC (12 years, 5 months ago) by bates
Remove reference to the no longer available CCOLAMD

Revision 1878 - Directory Listing
Modified Tue Jun 5 17:08:18 2007 UTC (12 years, 5 months ago) by bates


Revision 1877 - Directory Listing
Modified Tue Jun 5 17:06:34 2007 UTC (12 years, 5 months ago) by bates


Revision 1876 - Directory Listing
Modified Tue Jun 5 16:53:04 2007 UTC (12 years, 5 months ago) by bates
Update to version 3.0.0 of SuiteSparse

Revision 1875 - Directory Listing
Modified Tue Jun 5 16:50:18 2007 UTC (12 years, 5 months ago) by bates
update to CSparse version 2.2.0

Revision 1874 - Directory Listing
Modified Tue Jun 5 16:49:30 2007 UTC (12 years, 5 months ago) by bates
add ./UFconfig to the include path for compilation

Revision 1873 - Directory Listing
Modified Tue Jun 5 16:48:45 2007 UTC (12 years, 5 months ago) by bates
Update to version 3.0.0 of SuiteSparse

Revision 1872 - Directory Listing
Modified Tue Jun 5 16:32:04 2007 UTC (12 years, 5 months ago) by maechler
+ example

Revision 1871 - Directory Listing
Modified Tue Jun 5 16:31:10 2007 UTC (12 years, 5 months ago) by maechler
rm INDEX, no longer needed

Revision 1870 - Directory Listing
Modified Tue Jun 5 16:28:55 2007 UTC (12 years, 5 months ago) by maechler
give message on suppressed column names

Revision 1869 - Directory Listing
Modified Tue Jun 5 15:03:49 2007 UTC (12 years, 5 months ago) by bates
Modify for new organization of CSparse package

Revision 1868 - Directory Listing
Modified Mon Jun 4 17:15:09 2007 UTC (12 years, 5 months ago) by bates


Revision 1867 - Directory Listing
Modified Mon Jun 4 17:13:02 2007 UTC (12 years, 5 months ago) by bates
Remove warnings after change to const char* CHAR

Revision 1866 - Directory Listing
Modified Mon Jun 4 17:11:11 2007 UTC (12 years, 5 months ago) by bates
Corrected type of M_cholmod_ssmult

Revision 1863 - Directory Listing
Modified Sun Jun 3 14:57:55 2007 UTC (12 years, 5 months ago) by bates


Revision 1862 - Directory Listing
Modified Sun Jun 3 14:42:03 2007 UTC (12 years, 5 months ago) by bates
Yet another cholmod export - cholmod_ssmult

Revision 1855 - Directory Listing
Modified Wed May 23 21:33:34 2007 UTC (12 years, 6 months ago) by maechler
export drop0() {name is open for discussion}; document colSums

Revision 1854 - Directory Listing
Modified Tue May 22 14:20:31 2007 UTC (12 years, 6 months ago) by maechler
cannot have this "only readable for R-core" -- why???

Revision 1853 - Directory Listing
Modified Tue May 22 13:16:15 2007 UTC (12 years, 6 months ago) by maechler
"misc" directory, just for the developers

Revision 1852 - Directory Listing
Modified Mon May 21 16:42:35 2007 UTC (12 years, 6 months ago) by maechler
sparseVector. <- v; rowSums/colSums; summary(<sparse>); spMatrix(.) utility

Revision 1851 - Directory Listing
Modified Mon May 21 16:06:04 2007 UTC (12 years, 6 months ago) by maechler
remove (once again??!)

Revision 1850 - Directory Listing
Modified Sat May 19 20:18:35 2007 UTC (12 years, 6 months ago) by maechler
tweak new test

Revision 1849 - Directory Listing
Modified Sat May 19 19:57:48 2007 UTC (12 years, 6 months ago) by maechler
renamed file (from "mm-redo.R")

Revision 1848 - Directory Listing
Modified Sat May 19 19:57:19 2007 UTC (12 years, 6 months ago) by maechler
add writeMM/readMM test

Revision 1847 - Directory Listing
Modified Sat May 19 19:23:28 2007 UTC (12 years, 6 months ago) by bates
Write 1-based, not 0-based, indices in writeMM

Revision 1846 - Directory Listing
Modified Wed May 16 22:58:02 2007 UTC (12 years, 6 months ago) by maechler
forgotten in last commit

Revision 1845 - Directory Listing
Modified Wed May 16 21:24:41 2007 UTC (12 years, 6 months ago) by maechler
part of sparseVector additions; in order to avoid merge conflicts

Revision 1844 - Directory Listing
Modified Wed May 16 20:40:34 2007 UTC (12 years, 6 months ago) by bates
Added solve methods for CHMfactor class

Revision 1838 - Directory Listing
Modified Tue May 15 10:33:37 2007 UTC (12 years, 6 months ago) by maechler
extraneous "}" found by new R-devel checks

Revision 1837 - Directory Listing
Modified Mon May 14 13:17:37 2007 UTC (12 years, 6 months ago) by maechler
new version for CRAN - windows problem

Revision 1836 - Directory Listing
Modified Mon May 14 13:14:49 2007 UTC (12 years, 6 months ago) by maechler
also remove zpotf2.f et al  from Makefile.win

Revision 1835 - Directory Listing
Modified Fri May 11 10:41:21 2007 UTC (12 years, 6 months ago) by maechler
testing symmetric Tsparse indexing

Revision 1834 - Directory Listing
Modified Fri May 11 10:07:17 2007 UTC (12 years, 6 months ago) by maechler
fixed symmetric Tsparse indexing

Revision 1833 - Directory Listing
Modified Tue May 8 12:25:57 2007 UTC (12 years, 6 months ago) by maechler
fix duplicated subassigment: A[c(1,2,1),3] <- ..

Revision 1832 - Directory Listing
Modified Tue May 1 10:18:27 2007 UTC (12 years, 6 months ago) by maechler
for "!" use (x) for R >= 2.6.0, and (e1) otherwise;
 replace "1:1" by "1L" since we now require R >= 2.5.0

Revision 1830 - Directory Listing
Modified Fri Apr 27 13:35:18 2007 UTC (12 years, 6 months ago) by bates
Syntax error

Revision 1829 - Directory Listing
Modified Thu Apr 26 06:35:20 2007 UTC (12 years, 7 months ago) by maechler
update; mostly for ("[", Tsparse..)"

Revision 1828 - Directory Listing
Modified Wed Apr 25 22:23:31 2007 UTC (12 years, 7 months ago) by bates
Export another CHOLMOD function

Revision 1827 - Directory Listing
Modified Wed Apr 25 22:22:41 2007 UTC (12 years, 7 months ago) by bates
Remove superfluous Lapack files

Revision 1826 - Directory Listing
Modified Fri Apr 13 20:25:30 2007 UTC (12 years, 7 months ago) by maechler
use cBind/rBind in vignette/doc/Intro2Matrix.Rnw

Revision 1825 - Directory Listing
Modified Thu Apr 12 13:21:51 2007 UTC (12 years, 7 months ago) by maechler
kronecker() rationalization; more setAs(), notably to virtual classes and tT <-> gT

Revision 1824 - Directory Listing
Modified Thu Apr 12 09:07:51 2007 UTC (12 years, 7 months ago) by maechler
+ 2 more cat()

Revision 1808 - Directory Listing
Modified Thu Mar 29 21:59:20 2007 UTC (12 years, 7 months ago) by bates
Consistency of bounds

Revision 1806 - Directory Listing
Modified Tue Mar 27 16:46:29 2007 UTC (12 years, 7 months ago) by maechler
first cut at new page __ FIXME

Revision 1805 - Directory Listing
Modified Tue Mar 27 16:46:03 2007 UTC (12 years, 7 months ago) by maechler
other part of move to kronecker.R

Revision 1804 - Directory Listing
Modified Tue Mar 27 16:44:46 2007 UTC (12 years, 7 months ago) by maechler
omit cbind/rbind again, and use cBind/rBind only

Revision 1803 - Directory Listing
Modified Tue Mar 27 16:43:22 2007 UTC (12 years, 7 months ago) by maechler
move kronecker() methods to one place; goal (not yet!): become much faster

Revision 1799 - Directory Listing
Modified Sat Mar 24 14:54:00 2007 UTC (12 years, 8 months ago) by maechler
+ diff(.), + "dim<-";  cBind/rBind + cbind/rbind; indexing fixes - current state

Revision 1798 - Directory Listing
Modified Sat Mar 24 14:52:47 2007 UTC (12 years, 8 months ago) by maechler
better dtC inversion from Kasper K

Revision 1791 - Directory Listing
Modified Sat Feb 24 16:59:07 2007 UTC (12 years, 8 months ago) by bates
Add information on 0-based permutation

Revision 1787 - Directory Listing
Modified Fri Feb 16 20:02:19 2007 UTC (12 years, 9 months ago) by bates
Prepare for 0.9975-11 release

Revision 1786 - Directory Listing
Modified Fri Feb 16 17:37:56 2007 UTC (12 years, 9 months ago) by bates
Add image method for CHMfactor class

Revision 1776 - Directory Listing
Modified Sat Feb 10 21:00:24 2007 UTC (12 years, 9 months ago) by maechler
put keep.source into global \SweaveOpts{}

Revision 1771 - Directory Listing
Modified Tue Feb 6 17:41:42 2007 UTC (12 years, 9 months ago) by maechler
forgot free(.) in R_to_C; other cosmetic

Revision 1768 - Directory Listing
Modified Mon Feb 5 17:49:54 2007 UTC (12 years, 9 months ago) by maechler
update

Revision 1767 - Directory Listing
Modified Mon Feb 5 16:53:17 2007 UTC (12 years, 9 months ago) by maechler
eliminate infinite loop in coercions to [ln]sparseMatrix

Revision 1766 - Directory Listing
Modified Mon Feb 5 16:35:49 2007 UTC (12 years, 9 months ago) by maechler
port Doug`s fix to R_to_CMatrix and reactivate .Call()s

Revision 1765 - Directory Listing
Modified Mon Feb 5 16:32:04 2007 UTC (12 years, 9 months ago) by maechler
more Matrix <-> SparseM

Revision 1764 - Directory Listing
Modified Mon Feb 5 08:14:19 2007 UTC (12 years, 9 months ago) by maechler
use .T.2.C and properly fix last change for tril/triu/band {not using as_Csparse}

Revision 1763 - Directory Listing
Modified Sun Feb 4 21:57:00 2007 UTC (12 years, 9 months ago) by bates
Use strdup, not automatic character arrays

Revision 1761 - Directory Listing
Modified Sun Feb 4 19:33:36 2007 UTC (12 years, 9 months ago) by bates
Fix a cut-and-paste error

Revision 1760 - Directory Listing
Modified Sat Feb 3 21:13:22 2007 UTC (12 years, 9 months ago) by maechler
Rsparse coercions now all via R-level "workaround"; to and from  *virtual* rather than specific classes

Revision 1759 - Directory Listing
Modified Sat Feb 3 21:07:00 2007 UTC (12 years, 9 months ago) by maechler
typo

Revision 1758 - Directory Listing
Modified Sat Feb 3 16:34:51 2007 UTC (12 years, 9 months ago) by maechler
workaround platform-dependent segfault in R_to_CMatrix

Revision 1751 - Directory Listing
Modified Tue Jan 30 17:41:02 2007 UTC (12 years, 9 months ago) by maechler
drop(); tweaks to Ops & indexing; Rsparse coercions for less exceptions in tests/Class+Meth.R

Revision 1750 - Directory Listing
Modified Mon Jan 29 21:10:53 2007 UTC (12 years, 9 months ago) by maechler
more revisiting "FIXME"..

Revision 1749 - Directory Listing
Modified Mon Jan 29 21:00:06 2007 UTC (12 years, 9 months ago) by maechler
revisit FIXMEs

Revision 1748 - Directory Listing
Modified Mon Jan 29 20:48:26 2007 UTC (12 years, 9 months ago) by maechler
solve(<diagMatrix>)

Revision 1747 - Directory Listing
Modified Mon Jan 29 20:17:33 2007 UTC (12 years, 9 months ago) by maechler
many more coercions for diag(), "!", etc; see ChangeLog

Revision 1746 - Directory Listing
Modified Mon Jan 29 16:04:38 2007 UTC (12 years, 9 months ago) by maechler
new DEPS.mkf + reminder on how to

Revision 1738 - Directory Listing
Modified Tue Jan 23 17:17:15 2007 UTC (12 years, 10 months ago) by maechler
nnzero(), length(), "Ops" & "Logic", many more setAs(); misc.fixes

Revision 1737 - Directory Listing
Modified Tue Jan 23 17:14:20 2007 UTC (12 years, 10 months ago) by maechler
much faster "fancy" adjust in show()

Revision 1736 - Directory Listing
Modified Tue Jan 23 17:09:41 2007 UTC (12 years, 10 months ago) by maechler
+ SET_Dimnames; more dimnames setting and other cosmetic

Revision 1735 - Directory Listing
Modified Tue Jan 23 17:07:37 2007 UTC (12 years, 10 months ago) by maechler
mv gt2tT() to Auxiliaries, and extend it

Revision 1734 - Directory Listing
Modified Tue Jan 23 16:05:53 2007 UTC (12 years, 10 months ago) by maechler
moved ( + extended) dgRMatrix.R to Rsparse.R

Revision 1731 - Directory Listing
Modified Thu Jan 18 13:56:55 2007 UTC (12 years, 10 months ago) by maechler
autogenerate coercions (unfinished non-activated idea)

Revision 1725 - Directory Listing
Modified Wed Jan 17 08:01:10 2007 UTC (12 years, 10 months ago) by maechler
accomplished quite a few small FIXMEs; see ChangeLog

Revision 1724 - Directory Listing
Modified Sat Jan 13 21:06:51 2007 UTC (12 years, 10 months ago) by maechler
indexing etc till yesterday

Revision 1718 - Directory Listing
Modified Sat Jan 6 10:54:53 2007 UTC (12 years, 10 months ago) by maechler
add "..." to as.matrix()

Revision 1716 - Directory Listing
Modified Sat Jan 6 02:01:24 2007 UTC (12 years, 10 months ago) by bates
export cholmod_scale

Revision 1714 - Directory Listing
Modified Thu Dec 28 22:11:32 2006 UTC (12 years, 10 months ago) by maechler
move Ops to new Ops.R; start using "Logic"

Revision 1713 - Directory Listing
Modified Thu Dec 28 22:11:08 2006 UTC (12 years, 10 months ago) by maechler
as(*, nMatrix)

Revision 1712 - Directory Listing
Modified Wed Dec 27 21:19:24 2006 UTC (12 years, 10 months ago) by maechler
use Lapack 3.1 version for zpot*.f

Revision 1711 - Directory Listing
Modified Wed Dec 27 11:23:41 2006 UTC (12 years, 10 months ago) by maechler
+ include

Revision 1710 - Directory Listing
Modified Tue Dec 26 15:57:06 2006 UTC (12 years, 10 months ago) by maechler
more "[<-" fixes; validity of triangular sparse

Revision 1708 - Directory Listing
Modified Fri Dec 22 19:53:37 2006 UTC (12 years, 11 months ago) by maechler
rbind2() / cbind2() methods fixes + new Auxiliaries

Revision 1707 - Directory Listing
Modified Thu Dec 21 08:03:05 2006 UTC (12 years, 11 months ago) by maechler
fix last (? ha!) indexing bug; cbind2/rbind2

Revision 1706 - Directory Listing
Modified Wed Dec 20 17:40:17 2006 UTC (12 years, 11 months ago) by maechler
make sure to use source from R 2.5.0 on

Revision 1705 - Directory Listing
Modified Sat Dec 16 12:37:25 2006 UTC (12 years, 11 months ago) by maechler
any(), all() and "Compare"(<sparse>) - for release of 0.9975-7

Revision 1703 - Directory Listing
Modified Fri Dec 15 10:16:51 2006 UTC (12 years, 11 months ago) by bates
Export cholmod_change_factor and cholmod_factor_to_sparse

Revision 1696 - Directory Listing
Modified Mon Dec 11 21:41:37 2006 UTC (12 years, 11 months ago) by maechler
fix symmetric-sparse-indexing bug

Revision 1691 - Directory Listing
Modified Sun Dec 10 13:54:15 2006 UTC (12 years, 11 months ago) by bates
Convert LDL to LL before conversion to sparseMatrix; clean up docs

Revision 1688 - Directory Listing
Modified Sat Dec 9 00:29:45 2006 UTC (12 years, 11 months ago) by bates
export cholmod_analyze_p; new version

Revision 1687 - Directory Listing
Modified Tue Dec 5 13:37:13 2006 UTC (12 years, 11 months ago) by maechler
3 mini updates

Revision 1686 - Directory Listing
Modified Mon Dec 4 16:20:46 2006 UTC (12 years, 11 months ago) by bates
Check Lapack error code in dgeMatrix_matrix_solve

Revision 1682 - Directory Listing
Modified Fri Dec 1 18:42:40 2006 UTC (12 years, 11 months ago) by maechler
"fix" ddi %*% dgC dispatch

Revision 1681 - Directory Listing
Modified Wed Nov 29 15:55:03 2006 UTC (12 years, 11 months ago) by bates
Check error code from dgetri in dgeMatrix_solve (Barry Rowlingson)

Revision 1675 - Directory Listing
Modified Tue Nov 7 17:10:51 2006 UTC (13 years ago) by maechler
better comment

Revision 1674 - Directory Listing
Modified Tue Nov 7 13:29:23 2006 UTC (13 years ago) by maechler
ready for release

Revision 1673 - Directory Listing
Modified Mon Nov 6 20:54:26 2006 UTC (13 years ago) by maechler
host of changes; mostly indexing(sub-set & -assign) for symmetric and [ cbind(i,j) ]

Revision 1666 - Directory Listing
Modified Sat Nov 4 17:47:31 2006 UTC (13 years ago) by maechler
updated to CSparse 2.0.3 (via our CSparse_install.sh)

Revision 1665 - Directory Listing
Modified Fri Nov 3 23:18:07 2006 UTC (13 years ago) by maechler
fully-sparse solve() for dsC; indexing & comparison fixes

Revision 1664 - Directory Listing
Modified Fri Nov 3 13:38:32 2006 UTC (13 years ago) by bates
Fixed typo

Revision 1663 - Directory Listing
Modified Thu Nov 2 18:22:11 2006 UTC (13 years ago) by maechler
oops -- forgot this update in last revision

Revision 1662 - Directory Listing
Modified Thu Nov 2 13:45:08 2006 UTC (13 years ago) by maechler
drop FIXME

Revision 1661 - Directory Listing
Modified Thu Nov 2 13:10:50 2006 UTC (13 years ago) by maechler
2nd round of cleanup for <sparse>_validate()

Revision 1660 - Directory Listing
Modified Thu Nov 2 11:05:35 2006 UTC (13 years ago) by maechler
tcrossprod(<Csp>, <Csp>); dimnames for [t]crossprod; validity now ensures correct length(Dimnames[[j]])

Revision 1659 - Directory Listing
Modified Wed Nov 1 17:50:15 2006 UTC (13 years ago) by maechler
extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.

Revision 1658 - Directory Listing
Modified Wed Nov 1 17:43:46 2006 UTC (13 years ago) by maechler
0.9975-6 not -7

Revision 1657 - Directory Listing
Modified Wed Nov 1 16:29:53 2006 UTC (13 years ago) by bates
crossprod(<CsparseMatrix>,<CsparseMatrix>) added

Revision 1656 - Directory Listing
Modified Tue Oct 31 10:56:41 2006 UTC (13 years ago) by maechler
fix test ("diagonal =~= 1")

Revision 1655 - Directory Listing
Modified Mon Oct 30 17:16:27 2006 UTC (13 years ago) by maechler
another set of fixes/improvements; the last prompted by Harri Kiiveri

Revision 1654 - Directory Listing
Modified Fri Oct 27 16:58:15 2006 UTC (13 years ago) by maechler
miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

Revision 1647 - Directory Listing
Modified Mon Oct 23 12:36:27 2006 UTC (13 years, 1 month ago) by maechler
update for release

Revision 1646 - Directory Listing
Modified Sun Oct 22 22:42:40 2006 UTC (13 years, 1 month ago) by bates
Export yet another cholmod routine

Revision 1642 - Directory Listing
Modified Fri Oct 20 21:08:28 2006 UTC (13 years, 1 month ago) by maechler
small changes related to "corMatrix" and other newly seen classes in tests/Class+Meth.R

Revision 1641 - Directory Listing
Modified Fri Oct 20 15:04:40 2006 UTC (13 years, 1 month ago) by bates
Change cholmod to use Rprintf and R's error handler

Revision 1635 - Directory Listing
Modified Tue Oct 17 21:21:44 2006 UTC (13 years, 1 month ago) by maechler
fix Matrix() %*% Diagonal() bug

Revision 1634 - Directory Listing
Modified Mon Oct 16 13:42:29 2006 UTC (13 years, 1 month ago) by bates
Export cholmod_sort

Revision 1629 - Directory Listing
Modified Fri Oct 13 12:51:11 2006 UTC (13 years, 1 month ago) by bates
minor corrections

Revision 1625 - Directory Listing
Modified Thu Oct 12 15:06:55 2006 UTC (13 years, 1 month ago) by bates
Remove registration of write_HarwellBoeing and update version number

Revision 1624 - Directory Listing
Modified Wed Oct 11 15:00:11 2006 UTC (13 years, 1 month ago) by bates
Remove Harwell-Boeing format for writing

Revision 1620 - Directory Listing
Modified Sat Oct 7 12:48:05 2006 UTC (13 years, 1 month ago) by bates
deprecate writeHB in favor of writeMM

Revision 1619 - Directory Listing
Modified Fri Oct 6 21:29:15 2006 UTC (13 years, 1 month ago) by maechler
use Csparse_drop at least once

Revision 1618 - Directory Listing
Modified Fri Oct 6 15:44:01 2006 UTC (13 years, 1 month ago) by maechler
Matrix(0, d,d) should also give sparse (not diagonal); general_to_symmetric; notably for lsC*; more coercions; first cut at Csparse_drop()

Revision 1617 - Directory Listing
Modified Fri Oct 6 15:42:12 2006 UTC (13 years, 1 month ago) by maechler
sub-assign to diagonal => sparse; + new bdiag() function

Revision 1616 - Directory Listing
Modified Thu Oct 5 17:44:11 2006 UTC (13 years, 1 month ago) by bates
No longer needed

Revision 1615 - Directory Listing
Modified Thu Oct 5 16:30:46 2006 UTC (13 years, 1 month ago) by maechler
M[i,j] <- <Matrix>

Revision 1613 - Directory Listing
Modified Wed Oct 4 22:41:49 2006 UTC (13 years, 1 month ago) by bates
New release to export more CCallable functions

Revision 1612 - Directory Listing
Modified Wed Oct 4 16:33:32 2006 UTC (13 years, 1 month ago) by maechler
for Doug

Revision 1611 - Directory Listing
Modified Mon Oct 2 17:07:16 2006 UTC (13 years, 1 month ago) by bates
Simplify test taking into account new code

Revision 1604 - Directory Listing
Modified Fri Sep 29 15:17:24 2006 UTC (13 years, 1 month ago) by maechler
fix wrong "\" found by latest R-devel

Revision 1601 - Directory Listing
Modified Fri Sep 29 13:37:51 2006 UTC (13 years, 1 month ago) by maechler
one less TODO ...

Revision 1600 - Directory Listing
Modified Fri Sep 29 13:37:25 2006 UTC (13 years, 1 month ago) by maechler
fix a "subassign" case; less FIXME

Revision 1599 - Directory Listing
Modified Fri Sep 29 09:39:50 2006 UTC (13 years, 1 month ago) by maechler
more coercion methods (for rare matrices)  => less exceptions

Revision 1598 - Directory Listing
Modified Fri Sep 29 09:39:34 2006 UTC (13 years, 1 month ago) by maechler
comments & not_yet code

Revision 1596 - Directory Listing
Modified Thu Sep 28 23:22:16 2006 UTC (13 years, 1 month ago) by bates
Get the right number of arguments in cholmod_vertcat

Revision 1595 - Directory Listing
Modified Thu Sep 28 22:32:23 2006 UTC (13 years, 1 month ago) by bates
Add missing include file

Revision 1594 - Directory Listing
Modified Thu Sep 28 22:31:21 2006 UTC (13 years, 1 month ago) by bates
Export more functions from cholmod for use in Zt_create

Revision 1593 - Directory Listing
Modified Thu Sep 28 15:32:24 2006 UTC (13 years, 1 month ago) by maechler
 less "FIXME"; + 1 kronecker

Revision 1592 - Directory Listing
Modified Thu Sep 28 15:31:17 2006 UTC (13 years, 1 month ago) by maechler
"Compare" for "dMatrix"; plus a few small ones

Revision 1591 - Directory Listing
Modified Thu Sep 28 15:28:20 2006 UTC (13 years, 1 month ago) by maechler
validate tweaks for packed matrices

Revision 1589 - Directory Listing
Modified Wed Sep 27 15:57:12 2006 UTC (13 years, 1 month ago) by maechler
*correct* (!) SUBDIRS

Revision 1583 - Directory Listing
Modified Tue Sep 19 08:33:54 2006 UTC (13 years, 2 months ago) by maechler
Date ++

Revision 1582 - Directory Listing
Modified Tue Sep 19 08:03:10 2006 UTC (13 years, 2 months ago) by maechler
s/dito/ditto/

Revision 1578 - Directory Listing
Modified Mon Sep 18 21:02:50 2006 UTC (13 years, 2 months ago) by bates
Update.  Move lmer-related TODOs to lme4

Revision 1577 - Directory Listing
Modified Mon Sep 18 21:01:45 2006 UTC (13 years, 2 months ago) by bates
Handle [t]crossprod of symmetric, sparse matrices in R code

Revision 1576 - Directory Listing
Modified Mon Sep 18 15:30:37 2006 UTC (13 years, 2 months ago) by maechler
small update

Revision 1575 - Directory Listing
Modified Mon Sep 18 14:47:40 2006 UTC (13 years, 2 months ago) by maechler
check 'x' slot in l.CMatrix_validate

Revision 1574 - Directory Listing
Modified Mon Sep 18 13:28:50 2006 UTC (13 years, 2 months ago) by maechler
comments only

Revision 1573 - Directory Listing
Modified Sat Sep 16 22:19:43 2006 UTC (13 years, 2 months ago) by maechler
print sparse with NA

Revision 1572 - Directory Listing
Modified Sat Sep 16 22:06:45 2006 UTC (13 years, 2 months ago) by maechler
printing of NA in sparse logic Matrices

Revision 1571 - Directory Listing
Modified Sat Sep 16 21:03:12 2006 UTC (13 years, 2 months ago) by maechler
several small fixes + more tests for "lMatrix" classes; "Compare"; "chol"

Revision 1570 - Directory Listing
Modified Sat Sep 16 16:23:49 2006 UTC (13 years, 2 months ago) by maechler
rename lcsc_to_matrix to ncsc_* and write new lcsc_*()

Revision 1569 - Directory Listing
Modified Sat Sep 16 16:00:06 2006 UTC (13 years, 2 months ago) by maechler
get rid of as.Matrix() and helper function
which were never finished, never used, never exported

Revision 1568 - Directory Listing
Modified Sat Sep 16 15:17:27 2006 UTC (13 years, 2 months ago) by maechler
update for "l"Matrix cholmod-handling

Revision 1565 - Directory Listing
Modified Fri Sep 15 14:02:48 2006 UTC (13 years, 2 months ago) by maechler
Matrix <-> graph coercion update (for R 2.4.0)

Revision 1564 - Directory Listing
Modified Thu Sep 14 15:52:48 2006 UTC (13 years, 2 months ago) by maechler
fixup SUBDIRS

Revision 1563 - Directory Listing
Modified Thu Sep 14 15:52:32 2006 UTC (13 years, 2 months ago) by maechler
omit 'NULL' SOURCES_BLAS

Revision 1562 - Directory Listing
Modified Thu Sep 14 13:54:45 2006 UTC (13 years, 2 months ago) by maechler
Date

Revision 1560 - Directory Listing
Modified Thu Sep 14 06:54:18 2006 UTC (13 years, 2 months ago) by maechler
comment more (-Wall)

Revision 1558 - Directory Listing
Modified Wed Sep 13 17:02:50 2006 UTC (13 years, 2 months ago) by bates
Remove redundant validation checks

Revision 1557 - Directory Listing
Modified Wed Sep 13 16:04:46 2006 UTC (13 years, 2 months ago) by maechler
mini update, do NOT use \Scode (but \code)

Revision 1556 - Directory Listing
Modified Wed Sep 13 15:26:25 2006 UTC (13 years, 2 months ago) by bates
Apply the validity method we defined

Revision 1555 - Directory Listing
Modified Wed Sep 13 14:47:28 2006 UTC (13 years, 2 months ago) by bates
Move checks on column sorting of CsparseMatrix objects to Csparse_validate

Revision 1554 - Directory Listing
Modified Tue Sep 12 22:01:24 2006 UTC (13 years, 2 months ago) by bates
Remove lsame.f and zherk.f - now part of R's BLAS

Revision 1553 - Directory Listing
Modified Tue Sep 12 22:00:13 2006 UTC (13 years, 2 months ago) by bates
Conditionalize definition of SIZE_T_MAX to avoid warnings under Mac OS X (Tim will add this to the upstream sources)

Revision 1552 - Directory Listing
Modified Tue Sep 12 21:58:30 2006 UTC (13 years, 2 months ago) by bates
updates after removal of Metis, CAMD and CCOLAMD

Revision 1551 - Directory Listing
Modified Tue Sep 12 16:39:13 2006 UTC (13 years, 2 months ago) by maechler
1st fix at "Compare"; other small fixes

Revision 1550 - Directory Listing
Modified Tue Sep 12 13:16:30 2006 UTC (13 years, 2 months ago) by maechler
Memcopy: use (int *) in "l" case

Revision 1549 - Directory Listing
Modified Tue Sep 12 13:14:59 2006 UTC (13 years, 2 months ago) by maechler
obvious fix

Revision 1548 - Directory Listing
Modified Mon Sep 11 22:13:07 2006 UTC (13 years, 2 months ago) by maechler
new nMatrix and subclasses; lsparse change to have x slot; many consequences

Revision 1546 - Directory Listing
Modified Mon Sep 11 14:49:05 2006 UTC (13 years, 2 months ago) by bates
Move the alloc_d**Matrix utility functions from the Matrix package to the lme4 package

Revision 1545 - Directory Listing
Modified Sat Sep 9 21:50:14 2006 UTC (13 years, 2 months ago) by bates
Cleanup

Revision 1544 - Directory Listing
Modified Sat Sep 9 14:04:24 2006 UTC (13 years, 2 months ago) by maechler
oops (got conflict, because of forgotten commit)

Revision 1543 - Directory Listing
Modified Sat Sep 9 13:44:15 2006 UTC (13 years, 2 months ago) by bates
ignoring LDL = FALSE now fixed

Revision 1542 - Directory Listing
Modified Sat Sep 9 12:05:46 2006 UTC (13 years, 2 months ago) by maechler
do not define tcrossprod(<matrix>); not yet "graph::"

Revision 1541 - Directory Listing
Modified Sat Sep 9 12:04:53 2006 UTC (13 years, 2 months ago) by maechler
 fname instead of "fname"

Revision 1540 - Directory Listing
Modified Sat Sep 9 12:03:56 2006 UTC (13 years, 2 months ago) by maechler
add as.mat()

Revision 1538 - Directory Listing
Modified Fri Sep 8 13:18:50 2006 UTC (13 years, 2 months ago) by bates
Update description after removal of Metis et al.

Revision 1537 - Directory Listing
Modified Fri Sep 8 13:16:55 2006 UTC (13 years, 2 months ago) by bates
Remove dependencies on triplet_to_col and its source files

Revision 1536 - Directory Listing
Modified Fri Sep 8 12:59:48 2006 UTC (13 years, 2 months ago) by bates
Removal of partitioning methods for sparse matrix reordering

Revision 1535 - Directory Listing
Modified Fri Sep 8 12:58:34 2006 UTC (13 years, 2 months ago) by bates
revert to using __attribute__ to hide symbols

Revision 1534 - Directory Listing
Modified Fri Sep 8 12:21:07 2006 UTC (13 years, 2 months ago) by bates
Remove partitioning algorithms for fill-reducing permutation

Revision 1533 - Directory Listing
Modified Fri Sep 8 12:19:19 2006 UTC (13 years, 2 months ago) by bates
hide symbols with a pragma (using an __attribute__ may be better)

Revision 1532 - Directory Listing
Modified Thu Sep 7 17:58:01 2006 UTC (13 years, 2 months ago) by bates
Replace the PDF files of User's Guides by a text file giving links to them

Revision 1531 - Directory Listing
Modified Thu Sep 7 13:47:59 2006 UTC (13 years, 2 months ago) by bates
No longer using UMFPACK or LDL

Revision 1528 - Directory Listing
Modified Thu Sep 7 03:49:23 2006 UTC (13 years, 2 months ago) by bates
Cleanup

Revision 1525 - Directory Listing
Modified Wed Sep 6 22:35:17 2006 UTC (13 years, 2 months ago) by bates
Headers and stubs for export

Revision 1524 - Directory Listing
Modified Wed Sep 6 22:34:40 2006 UTC (13 years, 2 months ago) by bates
Add CAMD documentation

Revision 1523 - Directory Listing
Modified Wed Sep 6 22:33:39 2006 UTC (13 years, 2 months ago) by bates
Cleanup

Revision 1520 - Directory Listing
Modified Wed Sep 6 15:38:38 2006 UTC (13 years, 2 months ago) by bates
Use LinkingTo in DESCRIPTION so headers go back to the Matrix package

Revision 1519 - Directory Listing
Modified Wed Sep 6 15:37:50 2006 UTC (13 years, 2 months ago) by bates
Use LinkingTo in DESCRIPTION so headers go back to the Matrix package

Revision 1518 - Directory Listing
Modified Wed Sep 6 15:24:11 2006 UTC (13 years, 2 months ago) by bates
Add inst/include so I can "svn mv" to it

Revision 1517 - Directory Listing
Modified Wed Sep 6 13:34:03 2006 UTC (13 years, 2 months ago) by bates
Cleanup

Revision 1515 - Directory Listing
Modified Tue Sep 5 22:13:15 2006 UTC (13 years, 2 months ago) by bates
Update to version 1.2 of CHOLMOD and latest versions of its dependent packages

Revision 1514 - Directory Listing
Modified Tue Sep 5 20:15:56 2006 UTC (13 years, 2 months ago) by bates
Moved to ../../inst/doc/UFsparse/AMD.txt

Revision 1513 - Directory Listing
Modified Tue Sep 5 13:16:23 2006 UTC (13 years, 2 months ago) by maechler
re-add head() and tail() to exported methods

Revision 1512 - Directory Listing
Modified Tue Sep 5 10:08:20 2006 UTC (13 years, 2 months ago) by maechler
add FLIBS

Revision 1511 - Directory Listing
Modified Tue Sep 5 09:12:44 2006 UTC (13 years, 2 months ago) by maechler
remove UMFPACK and LDL also from Makefiles

Revision 1510 - Directory Listing
Modified Mon Sep 4 20:34:43 2006 UTC (13 years, 2 months ago) by bates
Turns out that LDL and UMFPACK were not being used

Revision 1507 - Directory Listing
Modified Mon Sep 4 18:41:34 2006 UTC (13 years, 2 months ago) by bates
Merging changes from Matrix-nolmer branch

Revision 1486 - Directory Listing
Modified Sat Sep 2 19:09:28 2006 UTC (13 years, 2 months ago) by bates
Clarify the sparse matrix libraries used

Revision 1481 - Directory Listing
Modified Sat Sep 2 16:43:22 2006 UTC (13 years, 2 months ago) by maechler
with the branch in place, up the Version and require R >= 2.4.0

Revision 1479 - Directory Listing
Modified Fri Sep 1 23:17:59 2006 UTC (13 years, 2 months ago) by bates
What was I thinking?  I checked in files without running R CMD check and adding documentation for methods.  Now fixed.

Revision 1478 - Directory Listing
Modified Fri Sep 1 23:16:49 2006 UTC (13 years, 2 months ago) by bates
*** empty log message ***

Revision 1477 - Directory Listing
Modified Fri Sep 1 23:13:35 2006 UTC (13 years, 2 months ago) by bates
Increment version number after last upload.

Revision 1476 - Directory Listing
Modified Fri Sep 1 22:49:10 2006 UTC (13 years, 2 months ago) by bates
Remove redundant method.

Revision 1475 - Directory Listing
Modified Fri Sep 1 22:35:59 2006 UTC (13 years, 2 months ago) by bates
*** empty log message ***

Revision 1474 - Directory Listing
Modified Fri Sep 1 22:35:29 2006 UTC (13 years, 2 months ago) by bates
Added direct method to CsparseMatrix from graphNEL

Revision 1473 - Directory Listing
Modified Fri Sep 1 15:43:32 2006 UTC (13 years, 2 months ago) by maechler
typo

Revision 1472 - Directory Listing
Modified Fri Sep 1 15:31:04 2006 UTC (13 years, 2 months ago) by maechler
miscellaneous tweaks; moved some method definitions higher up

Revision 1471 - Directory Listing
Modified Fri Sep 1 15:21:02 2006 UTC (13 years, 2 months ago) by maechler
new, probably temporary

Revision 1470 - Directory Listing
Modified Fri Sep 1 13:30:52 2006 UTC (13 years, 2 months ago) by bates
Remove unused name in ddense_band

Revision 1469 - Directory Listing
Modified Fri Sep 1 10:02:29 2006 UTC (13 years, 2 months ago) by maechler
minor update

Revision 1468 - Directory Listing
Modified Thu Aug 31 15:12:09 2006 UTC (13 years, 2 months ago) by bates
Date for release

Revision 1467 - Directory Listing
Modified Wed Aug 30 21:35:09 2006 UTC (13 years, 2 months ago) by maechler
several smallish fixes

Revision 1466 - Directory Listing
Modified Wed Aug 30 03:35:53 2006 UTC (13 years, 2 months ago) by bates
housekeeping

Revision 1465 - Directory Listing
Modified Wed Aug 30 03:05:59 2006 UTC (13 years, 2 months ago) by bates
housekeeping

Revision 1464 - Directory Listing
Modified Wed Aug 30 03:05:06 2006 UTC (13 years, 2 months ago) by bates
housekeeping

Revision 1463 - Directory Listing
Modified Tue Aug 29 22:30:57 2006 UTC (13 years, 2 months ago) by bates
Promotion of %*% and solve to RHS of ddenseMatrix

Revision 1462 - Directory Listing
Modified Tue Aug 29 16:34:49 2006 UTC (13 years, 2 months ago) by bates
Generalize %*% methods for sparse matrices

Revision 1461 - Directory Listing
Modified Tue Aug 29 16:17:27 2006 UTC (13 years, 2 months ago) by bates
Define and use class_P and mMatrix_as_dgeMatrix

Revision 1460 - Directory Listing
Modified Tue Aug 29 14:07:52 2006 UTC (13 years, 2 months ago) by bates
Promote %*% methods to ddenseMatrix class

Revision 1459 - Directory Listing
Modified Tue Aug 29 07:18:18 2006 UTC (13 years, 2 months ago) by maechler
cosmetic change in show()

Revision 1458 - Directory Listing
Modified Tue Aug 29 00:04:48 2006 UTC (13 years, 2 months ago) by bates
Remove vestigial classed argument for dsCMatrix_matrix_solve

Revision 1457 - Directory Listing
Modified Mon Aug 28 16:34:18 2006 UTC (13 years, 2 months ago) by maechler
very first skeleton at new Intro

Revision 1456 - Directory Listing
Modified Mon Aug 28 15:36:16 2006 UTC (13 years, 2 months ago) by maechler
Arith( dMatrix, dMatrix)

Revision 1455 - Directory Listing
Modified Mon Aug 28 15:35:44 2006 UTC (13 years, 2 months ago) by maechler
Matrix(*, forceCheck)

Revision 1454 - Directory Listing
Modified Mon Aug 28 13:00:39 2006 UTC (13 years, 2 months ago) by maechler
references

Revision 1453 - Directory Listing
Modified Sun Aug 27 16:16:35 2006 UTC (13 years, 2 months ago) by bates
Added triu, tril and band for ddenseMatrix objects.

Revision 1452 - Directory Listing
Modified Sat Aug 26 18:24:13 2006 UTC (13 years, 2 months ago) by maechler
tril,triu,band: triangular only if "square"

Revision 1451 - Directory Listing
Modified Sat Aug 26 17:25:57 2006 UTC (13 years, 2 months ago) by bates
Added initial version of dgeMatrix_band but may change design

Revision 1450 - Directory Listing
Modified Sat Aug 26 13:01:22 2006 UTC (13 years, 2 months ago) by bates
Direct call to dup_mMatrix_as_dgeMatrix

Revision 1449 - Directory Listing
Modified Sat Aug 26 13:00:36 2006 UTC (13 years, 2 months ago) by bates
Remove sections of code that are no longer used

Revision 1448 - Directory Listing
Modified Sat Aug 26 03:29:36 2006 UTC (13 years, 3 months ago) by bates
Move methods to the CsparseMatrix class

Revision 1447 - Directory Listing
Modified Fri Aug 25 20:38:36 2006 UTC (13 years, 3 months ago) by maechler
use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

Revision 1446 - Directory Listing
Modified Fri Aug 25 16:48:32 2006 UTC (13 years, 3 months ago) by bates
Change incorrect result class dgCMatrix to dgeMatrix.

Revision 1445 - Directory Listing
Modified Fri Aug 25 14:54:54 2006 UTC (13 years, 3 months ago) by bates
Bug fix due to Emmanuel Tillard

Revision 1444 - Directory Listing
Modified Fri Aug 25 14:39:45 2006 UTC (13 years, 3 months ago) by maechler
a bit more "MatrixFactorization" ..

Revision 1443 - Directory Listing
Modified Fri Aug 25 10:44:48 2006 UTC (13 years, 3 months ago) by maechler
1st stab at "MatrixFactorization" class; exporting CHMfactor etc

Revision 1442 - Directory Listing
Modified Thu Aug 24 22:08:11 2006 UTC (13 years, 3 months ago) by bates


Revision 1441 - Directory Listing
Modified Thu Aug 24 21:59:49 2006 UTC (13 years, 3 months ago) by bates
Add ddiMatrix,dtpMatrix, dspMatrix and dppMatrix conversions. Remove no-longer-used functions.

Revision 1440 - Directory Listing
Modified Thu Aug 24 18:34:18 2006 UTC (13 years, 3 months ago) by bates
Use dup_mMatrix_as_dgeMatrix

Revision 1439 - Directory Listing
Modified Thu Aug 24 18:24:50 2006 UTC (13 years, 3 months ago) by bates


Revision 1438 - Directory Listing
Modified Thu Aug 24 18:23:36 2006 UTC (13 years, 3 months ago) by bates
Replaced R_ldl etc. by CHOLMOD functions

Revision 1437 - Directory Listing
Modified Thu Aug 24 18:23:11 2006 UTC (13 years, 3 months ago) by bates
Replaced R_ldl etc. by CHOLMOD functions

Revision 1436 - Directory Listing
Modified Thu Aug 24 18:22:39 2006 UTC (13 years, 3 months ago) by bates
Use dup_mMatrix_as_dgeMatrix

Revision 1435 - Directory Listing
Modified Thu Aug 24 18:20:36 2006 UTC (13 years, 3 months ago) by bates
Replaced by CHOLMOD functions

Revision 1434 - Directory Listing
Modified Thu Aug 24 18:20:02 2006 UTC (13 years, 3 months ago) by bates
Added

Revision 1433 - Directory Listing
Modified Thu Aug 24 18:19:36 2006 UTC (13 years, 3 months ago) by bates
Replaced by CHOLMOD functions

Revision 1432 - Directory Listing
Modified Thu Aug 24 16:21:18 2006 UTC (13 years, 3 months ago) by maechler
eliminate classed argument from dup_mM*() and dependencies

Revision 1431 - Directory Listing
Modified Wed Aug 23 22:13:53 2006 UTC (13 years, 3 months ago) by bates


Revision 1430 - Directory Listing
Modified Wed Aug 23 22:13:34 2006 UTC (13 years, 3 months ago) by bates
Paring down dependencies

Revision 1429 - Directory Listing
Modified Wed Aug 23 22:12:52 2006 UTC (13 years, 3 months ago) by bates
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

Revision 1428 - Directory Listing
Modified Wed Aug 23 21:32:30 2006 UTC (13 years, 3 months ago) by bates
Disable chol methods for lsCMatrix class temporarily; Comment out old code in src/lsCMatrix.[ch]

Revision 1427 - Directory Listing
Modified Wed Aug 23 21:29:22 2006 UTC (13 years, 3 months ago) by bates
Add Cholesky generic and method for dsCMatrix.  Use CHOLMOD for chol().

Revision 1426 - Directory Listing
Modified Wed Aug 23 21:27:04 2006 UTC (13 years, 3 months ago) by bates
Ensure 'factors' slot exists in result of dgeMatrix_crossprod (may need to do this in other places).

Revision 1425 - Directory Listing
Modified Wed Aug 23 21:25:32 2006 UTC (13 years, 3 months ago) by bates
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

Revision 1424 - Directory Listing
Modified Wed Aug 23 14:26:19 2006 UTC (13 years, 3 months ago) by maechler
comments; cosmetic

Revision 1423 - Directory Listing
Modified Tue Aug 22 22:51:56 2006 UTC (13 years, 3 months ago) by bates
*** empty log message ***

Revision 1422 - Directory Listing
Modified Tue Aug 22 22:51:23 2006 UTC (13 years, 3 months ago) by bates
Replace ssc_transpose call

Revision 1421 - Directory Listing
Modified Tue Aug 22 22:50:38 2006 UTC (13 years, 3 months ago) by bates
Comment out vestigial functions

Revision 1420 - Directory Listing
Modified Tue Aug 22 22:49:40 2006 UTC (13 years, 3 months ago) by bates


Revision 1419 - Directory Listing
Modified Tue Aug 22 22:49:17 2006 UTC (13 years, 3 months ago) by bates
use diag_P and uplo_P macros

Revision 1418 - Directory Listing
Modified Tue Aug 22 22:47:37 2006 UTC (13 years, 3 months ago) by bates
Comment out vestigial functions

Revision 1417 - Directory Listing
Modified Tue Aug 22 22:46:07 2006 UTC (13 years, 3 months ago) by bates
Use CHOLMOD for dsCMatrix_chol and dsCMatrix_matrix_solve.

Revision 1416 - Directory Listing
Modified Tue Aug 22 22:44:14 2006 UTC (13 years, 3 months ago) by bates
Move check_class to Mutils.h and some bug fixes

Revision 1415 - Directory Listing
Modified Tue Aug 22 18:06:54 2006 UTC (13 years, 3 months ago) by bates
Misunderstood effect of make_d_matrix_triangular and make_d_matrix_symmetric.  Now fixed.  Use _NOT_A_CLASS_ instead of dmatrix for the name of the class that should not occur.

Revision 1414 - Directory Listing
Modified Tue Aug 22 17:25:43 2006 UTC (13 years, 3 months ago) by bates
*** empty log message ***

Revision 1413 - Directory Listing
Modified Tue Aug 22 17:25:24 2006 UTC (13 years, 3 months ago) by bates
register dup_mMatrix_as_dgeMatrix for coercions.

Revision 1412 - Directory Listing
Modified Tue Aug 22 17:23:39 2006 UTC (13 years, 3 months ago) by bates
updated for general types of classed Matrices, matrices or numeric or logical vectors.

Revision 1411 - Directory Listing
Modified Tue Aug 22 01:01:23 2006 UTC (13 years, 3 months ago) by bates
*** empty log message ***

Revision 1410 - Directory Listing
Modified Tue Aug 22 01:00:03 2006 UTC (13 years, 3 months ago) by bates
Use dup_mMatrix_as_dgeMatrix

Revision 1409 - Directory Listing
Modified Tue Aug 22 00:57:22 2006 UTC (13 years, 3 months ago) by bates
update validation tests, fix -Wall warnings

Revision 1408 - Directory Listing
Modified Tue Aug 22 00:53:51 2006 UTC (13 years, 3 months ago) by bates
Add tests to verify that 'solve' and '%*%' are inverses.

Revision 1407 - Directory Listing
Modified Mon Aug 21 15:24:47 2006 UTC (13 years, 3 months ago) by maechler
rename class "LU" to "denseLU" and make "LU" virtual

Revision 1406 - Directory Listing
Modified Mon Aug 21 15:20:45 2006 UTC (13 years, 3 months ago) by maechler
renamed, to be used for other factorizations; use stopifnot()

Revision 1405 - Directory Listing
Modified Mon Aug 21 14:43:00 2006 UTC (13 years, 3 months ago) by bates
*** empty log message ***

Revision 1404 - Directory Listing
Modified Mon Aug 21 14:38:50 2006 UTC (13 years, 3 months ago) by bates
Fix memory leak caught by valgrind.

Revision 1403 - Directory Listing
Modified Sun Aug 20 16:15:59 2006 UTC (13 years, 3 months ago) by bates


Revision 1402 - Directory Listing
Modified Sun Aug 20 16:15:38 2006 UTC (13 years, 3 months ago) by bates
Return correct # of coefs; fix cut-and-paste errors

Revision 1401 - Directory Listing
Modified Sun Aug 20 16:15:07 2006 UTC (13 years, 3 months ago) by bates
Document methods for qr.* generics

Revision 1400 - Directory Listing
Modified Sun Aug 20 16:14:35 2006 UTC (13 years, 3 months ago) by bates
added

Revision 1399 - Directory Listing
Modified Sun Aug 20 16:14:07 2006 UTC (13 years, 3 months ago) by bates
Fix thinko in sparseQR_resid_fitted

Revision 1398 - Directory Listing
Modified Sun Aug 20 03:26:06 2006 UTC (13 years, 3 months ago) by bates


Revision 1397 - Directory Listing
Modified Sun Aug 20 03:24:10 2006 UTC (13 years, 3 months ago) by bates
Check length of q before trying to store it

Revision 1396 - Directory Listing
Modified Sun Aug 20 03:17:19 2006 UTC (13 years, 3 months ago) by bates
Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and qr.fitted

Revision 1395 - Directory Listing
Modified Sun Aug 20 03:15:25 2006 UTC (13 years, 3 months ago) by bates
Added dup_mMatrix_as_dgeMatrix utility

Revision 1394 - Directory Listing
Modified Sat Aug 19 12:16:16 2006 UTC (13 years, 3 months ago) by maechler
add comment on why Rdefines.h

Revision 1393 - Directory Listing
Modified Fri Aug 18 17:00:10 2006 UTC (13 years, 3 months ago) by maechler
using R_VERSION (useful more generally) - does not help

Revision 1392 - Directory Listing
Modified Fri Aug 18 16:59:15 2006 UTC (13 years, 3 months ago) by maechler
example++

Revision 1391 - Directory Listing
Modified Fri Aug 18 15:42:24 2006 UTC (13 years, 3 months ago) by maechler
small update; extend LU-class example

Revision 1390 - Directory Listing
Modified Fri Aug 18 15:41:36 2006 UTC (13 years, 3 months ago) by maechler
fix last fix

Revision 1389 - Directory Listing
Modified Fri Aug 18 13:53:33 2006 UTC (13 years, 3 months ago) by maechler
export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse

Revision 1388 - Directory Listing
Modified Thu Aug 17 22:37:19 2006 UTC (13 years, 3 months ago) by bates


Revision 1387 - Directory Listing
Modified Thu Aug 17 22:31:34 2006 UTC (13 years, 3 months ago) by bates
Use C code for diagU2N in CsparseMatrix classes

Revision 1386 - Directory Listing
Modified Thu Aug 17 22:30:40 2006 UTC (13 years, 3 months ago) by bates
Remove code that is no longer used

Revision 1385 - Directory Listing
Modified Thu Aug 17 22:30:01 2006 UTC (13 years, 3 months ago) by bates
Added solve methods for dgCMatrix and documentation

Revision 1384 - Directory Listing
Modified Thu Aug 17 13:59:21 2006 UTC (13 years, 3 months ago) by bates
Update to version 2.0.1 of Tim Davis's CSparse library

Revision 1383 - Directory Listing
Modified Thu Aug 17 13:57:53 2006 UTC (13 years, 3 months ago) by bates
add sparse LU and QR decompositions

Revision 1382 - Directory Listing
Modified Wed Aug 16 16:34:27 2006 UTC (13 years, 3 months ago) by maechler
new script for CSparse updating

Revision 1381 - Directory Listing
Modified Wed Aug 16 03:17:34 2006 UTC (13 years, 3 months ago) by bates
Repaired Matrix_cs_as_SEXP, cosmetic changes in dgCMatrix_QR

Revision 1380 - Directory Listing
Modified Tue Aug 15 22:31:30 2006 UTC (13 years, 3 months ago) by bates
Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working

Revision 1379 - Directory Listing
Modified Tue Aug 15 19:05:00 2006 UTC (13 years, 3 months ago) by maechler
made Date: current

Revision 1378 - Directory Listing
Modified Tue Aug 15 18:25:14 2006 UTC (13 years, 3 months ago) by maechler
update methods list

Revision 1377 - Directory Listing
Modified Tue Aug 15 18:24:58 2006 UTC (13 years, 3 months ago) by maechler
small update

Revision 1376 - Directory Listing
Modified Tue Aug 15 18:22:54 2006 UTC (13 years, 3 months ago) by maechler
use Csparse_to_logical

Revision 1375 - Directory Listing
Modified Tue Aug 15 18:21:49 2006 UTC (13 years, 3 months ago) by maechler
eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general

Revision 1374 - Directory Listing
Modified Tue Aug 15 18:17:44 2006 UTC (13 years, 3 months ago) by maechler
fix replCmat, using new C Csparse_symmetric_to_general

Revision 1373 - Directory Listing
Modified Mon Aug 14 21:15:38 2006 UTC (13 years, 3 months ago) by bates


Revision 1372 - Directory Listing
Modified Mon Aug 14 21:10:16 2006 UTC (13 years, 3 months ago) by bates
Consolidate general coercion methods in Csparse.R

Revision 1371 - Directory Listing
Modified Mon Aug 14 21:08:58 2006 UTC (13 years, 3 months ago) by bates
Utilities Csparse_to_logical and Csparse_symmetric_to_general

Revision 1370 - Directory Listing
Modified Mon Aug 14 19:00:02 2006 UTC (13 years, 3 months ago) by bates
Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible

Revision 1369 - Directory Listing
Modified Mon Aug 14 18:54:04 2006 UTC (13 years, 3 months ago) by bates
Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible

Revision 1368 - Directory Listing
Modified Sat Aug 12 17:34:00 2006 UTC (13 years, 3 months ago) by bates
Generalize conversions

Revision 1367 - Directory Listing
Modified Sat Aug 12 17:33:07 2006 UTC (13 years, 3 months ago) by bates
Generalize conversions

Revision 1366 - Directory Listing
Modified Sat Aug 12 17:31:39 2006 UTC (13 years, 3 months ago) by bates
Generalize conversions

Revision 1365 - Directory Listing
Modified Thu Aug 10 18:52:55 2006 UTC (13 years, 3 months ago) by bates
*** empty log message ***

Revision 1364 - Directory Listing
Modified Thu Aug 10 18:50:32 2006 UTC (13 years, 3 months ago) by bates
Check on all(eq) should be all(eq@x) - worked for wrong reasons prior to S4SXP

Revision 1363 - Directory Listing
Modified Thu Aug 10 18:49:06 2006 UTC (13 years, 3 months ago) by bates
Adjust glmer_init for S4SXP

Revision 1362 - Directory Listing
Modified Thu Aug 10 09:44:55 2006 UTC (13 years, 3 months ago) by maechler
update (do not 2.4.0-only code)

Revision 1361 - Directory Listing
Modified Thu Aug 10 09:44:17 2006 UTC (13 years, 3 months ago) by maechler
S4 type check found test buglet

Revision 1360 - Directory Listing
Modified Tue Aug 8 17:29:03 2006 UTC (13 years, 3 months ago) by bates
crossprod and tcrossprod for TsparseMatrix

Revision 1359 - Directory Listing
Modified Tue Aug 8 16:27:59 2006 UTC (13 years, 3 months ago) by maechler
more [tcrossprod(), Matrix, dpo*] tests

Revision 1358 - Directory Listing
Modified Tue Aug 8 16:27:28 2006 UTC (13 years, 3 months ago) by maechler
fix comment

Revision 1357 - Directory Listing
Modified Tue Aug 8 16:26:38 2006 UTC (13 years, 3 months ago) by maechler
.is.diagonal() and as_geClass() fixes

Revision 1356 - Directory Listing
Modified Tue Aug 8 16:24:53 2006 UTC (13 years, 3 months ago) by maechler
enable more examples

Revision 1355 - Directory Listing
Modified Tue Aug 8 16:24:41 2006 UTC (13 years, 3 months ago) by maechler
better (comments in) examples

Revision 1354 - Directory Listing
Modified Tue Aug 8 14:54:43 2006 UTC (13 years, 3 months ago) by bates
*** empty log message ***

Revision 1353 - Directory Listing
Modified Tue Aug 8 14:54:12 2006 UTC (13 years, 3 months ago) by bates
tcrossprod result has stype = -1 (perhaps this should change).

Revision 1352 - Directory Listing
Modified Mon Aug 7 18:31:12 2006 UTC (13 years, 3 months ago) by bates
Set stype in C function Csparse_crossprod and avoid R-level conversions

Revision 1351 - Directory Listing
Modified Mon Aug 7 16:51:14 2006 UTC (13 years, 3 months ago) by maechler
use speedier crossprod() for "dgC" - still slower than t(.) %*% .

Revision 1350 - Directory Listing
Modified Mon Aug 7 09:06:17 2006 UTC (13 years, 3 months ago) by maechler
library(Matrix) *outside* if; more graph tests

Revision 1349 - Directory Listing
Modified Mon Aug 7 09:05:42 2006 UTC (13 years, 3 months ago) by maechler
tril() etc also for T* and Rsparse

Revision 1348 - Directory Listing
Modified Mon Aug 7 09:05:00 2006 UTC (13 years, 3 months ago) by maechler
sparse -> graph fix

Revision 1347 - Directory Listing
Modified Mon Aug 7 08:47:43 2006 UTC (13 years, 3 months ago) by maechler
use utils:::tail.matrix directly

Revision 1346 - Directory Listing
Modified Thu Aug 3 17:17:55 2006 UTC (13 years, 3 months ago) by maechler
recreate the S4 Matrix examples at data load time

Revision 1345 - Directory Listing
Modified Thu Aug 3 17:17:43 2006 UTC (13 years, 3 months ago) by maechler
add another example

Revision 1344 - Directory Listing
Modified Thu Aug 3 17:15:31 2006 UTC (13 years, 3 months ago) by maechler
add data(sleepstudy), needed because of LazyData: no

Revision 1343 - Directory Listing
Modified Wed Aug 2 20:43:52 2006 UTC (13 years, 3 months ago) by maechler
 + factorNames2char() utility for nicer warnings

Revision 1342 - Directory Listing
Modified Tue Aug 1 20:26:45 2006 UTC (13 years, 3 months ago) by bates
hatTrace and warnings about boundary convergence

Revision 1341 - Directory Listing
Modified Tue Aug 1 17:55:57 2006 UTC (13 years, 3 months ago) by maechler
using \dQuote{} and drop nolonger existing 'random.effects'

Revision 1340 - Directory Listing
Modified Tue Aug 1 15:35:23 2006 UTC (13 years, 3 months ago) by bates
Document the caterpillar plot.

Revision 1339 - Directory Listing
Modified Mon Jul 31 23:08:21 2006 UTC (13 years, 3 months ago) by bates
More things to do

Revision 1338 - Directory Listing
Modified Mon Jul 31 23:06:01 2006 UTC (13 years, 3 months ago) by bates


Revision 1337 - Directory Listing
Modified Mon Jul 31 23:05:46 2006 UTC (13 years, 3 months ago) by bates
Document postVar argument to ranef method

Revision 1336 - Directory Listing
Modified Mon Jul 31 23:05:04 2006 UTC (13 years, 3 months ago) by bates
Add hatTrace function

Revision 1335 - Directory Listing
Modified Mon Jul 31 12:11:35 2006 UTC (13 years, 3 months ago) by maechler
change unused class "correlation" to "corMatrix"

Revision 1334 - Directory Listing
Modified Mon Jul 31 12:11:16 2006 UTC (13 years, 3 months ago) by maechler
rm old remnant

Revision 1333 - Directory Listing
Modified Mon Jul 31 08:32:50 2006 UTC (13 years, 3 months ago) by maechler
cleanup

Revision 1332 - Directory Listing
Modified Thu Jul 27 13:42:18 2006 UTC (13 years, 3 months ago) by maechler
more dgRMatrix coercions (5 days ago)

Revision 1331 - Directory Listing
Modified Sat Jul 22 17:59:53 2006 UTC (13 years, 4 months ago) by maechler
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

Revision 1330 - Directory Listing
Modified Fri Jul 21 08:28:18 2006 UTC (13 years, 4 months ago) by maechler
pass verbose argument to (gl)mer_MCMCsamp() and use it in C code

Revision 1329 - Directory Listing
Modified Fri Jul 21 06:47:06 2006 UTC (13 years, 4 months ago) by maechler
miscellaneous mostly related to sparse indexing

Revision 1328 - Directory Listing
Modified Fri Jul 21 06:46:36 2006 UTC (13 years, 4 months ago) by maechler
export isSymmetric()

Revision 1327 - Directory Listing
Modified Fri Jul 21 06:43:31 2006 UTC (13 years, 4 months ago) by maechler
add some SparseM <-> Matrix conversions

Revision 1326 - Directory Listing
Modified Wed Jul 19 14:58:26 2006 UTC (13 years, 4 months ago) by bates
head and tail methods and reminder in TODO of classes after subscripting

Revision 1325 - Directory Listing
Modified Tue Jul 18 15:07:18 2006 UTC (13 years, 4 months ago) by bates
Wrap lines in the License section at a shorter line length.  Cite correct directory doc/UFsparse.

Revision 1324 - Directory Listing
Modified Mon Jul 17 20:15:54 2006 UTC (13 years, 4 months ago) by maechler
update date

Revision 1323 - Directory Listing
Modified Mon Jul 17 18:34:45 2006 UTC (13 years, 4 months ago) by bates
Add coersion from CHMfactor to sparseMatrix

Revision 1322 - Directory Listing
Modified Mon Jul 17 18:31:12 2006 UTC (13 years, 4 months ago) by bates
Finish the sentence

Revision 1321 - Directory Listing
Modified Mon Jul 17 18:29:48 2006 UTC (13 years, 4 months ago) by bates
Remove leading blanks in a string.  They are being tabified and result in incorrect alignment

Revision 1320 - Directory Listing
Modified Mon Jul 17 17:14:33 2006 UTC (13 years, 4 months ago) by bates
Added a "To Do" about always printing the log-likelihood and the restricted-log-likelihood for an lmer object.

Revision 1319 - Directory Listing
Modified Mon Jul 17 13:08:04 2006 UTC (13 years, 4 months ago) by maechler
non0ind() extended for symmetric sparse matrices -> correct printing

Revision 1318 - Directory Listing
Modified Mon Jul 17 13:06:55 2006 UTC (13 years, 4 months ago) by maechler
dsTMatrix_as_dgTMatrix(): do not copy the diag TWICE

Revision 1317 - Directory Listing
Modified Tue Jul 11 22:02:10 2006 UTC (13 years, 4 months ago) by bates
Fix the problem of applying INTEGER to the x slot of the value.

Revision 1316 - Directory Listing
Modified Tue Jul 11 22:00:41 2006 UTC (13 years, 4 months ago) by bates
*** empty log message ***

Revision 1315 - Directory Listing
Modified Mon Jul 10 16:08:05 2006 UTC (13 years, 4 months ago) by maechler
miscellaneous small things, including extended tests; see also ChangeLog

Revision 1314 - Directory Listing
Modified Mon Jul 10 15:23:48 2006 UTC (13 years, 4 months ago) by maechler
add lgCMatrix_diag()

Revision 1313 - Directory Listing
Modified Thu Jul 6 17:24:01 2006 UTC (13 years, 4 months ago) by bates
Updating documentation

Revision 1312 - Directory Listing
Modified Thu Jul 6 15:29:56 2006 UTC (13 years, 4 months ago) by bates


Revision 1311 - Directory Listing
Modified Thu Jul 6 15:28:42 2006 UTC (13 years, 4 months ago) by bates


Revision 1310 - Directory Listing
Modified Thu Jul 6 15:27:14 2006 UTC (13 years, 4 months ago) by bates
Remove definitions of unused identifiers

Revision 1309 - Directory Listing
Modified Thu Jul 6 15:25:55 2006 UTC (13 years, 4 months ago) by bates
mcmcsamp for glmer objects

Revision 1308 - Directory Listing
Modified Thu Jul 6 15:25:21 2006 UTC (13 years, 4 months ago) by bates
mcmcsamp for glmer objects

Revision 1307 - Directory Listing
Modified Thu Jul 6 15:16:45 2006 UTC (13 years, 4 months ago) by bates
Correction in pedigree_inbreeding (which is not currently being used or fully tested)

Revision 1306 - Directory Listing
Modified Thu Jul 6 15:14:12 2006 UTC (13 years, 4 months ago) by bates
Establish new class glmer; modify validity check on pedigree to account for nonparallel patterns of missingness in parents

Revision 1305 - Directory Listing
Modified Sat Jul 1 16:18:39 2006 UTC (13 years, 4 months ago) by maechler
coercion pMatrix -> Tsparse

Revision 1304 - Directory Listing
Modified Mon Jun 26 14:34:21 2006 UTC (13 years, 4 months ago) by bates
Preparing for new release in early July

Revision 1303 - Directory Listing
Modified Mon Jun 26 14:33:16 2006 UTC (13 years, 4 months ago) by bates
Correction in deviance method for mer objects; some cleanup

Revision 1302 - Directory Listing
Modified Mon Jun 19 15:36:44 2006 UTC (13 years, 5 months ago) by maechler
fix segfault from wrong formula

Revision 1301 - Directory Listing
Modified Mon Jun 12 10:52:45 2006 UTC (13 years, 5 months ago) by bates
Corrected naming of columns of an mcmcsamp object

Revision 1300 - Directory Listing
Modified Mon Jun 12 10:52:01 2006 UTC (13 years, 5 months ago) by bates


Revision 1299 - Directory Listing
Modified Mon Jun 12 08:06:21 2006 UTC (13 years, 5 months ago) by maechler
mcmcsamp()[,"deviance"] was wrong column

Revision 1298 - Directory Listing
Modified Sat Jun 10 19:56:18 2006 UTC (13 years, 5 months ago) by bates


Revision 1297 - Directory Listing
Modified Sat Jun 10 19:54:41 2006 UTC (13 years, 5 months ago) by bates
added simulestimate for lmer but hidden in NAMESPACE

Revision 1296 - Directory Listing
Modified Sat Jun 10 18:06:33 2006 UTC (13 years, 5 months ago) by bates
Re-aligned deviance column in mcmcsamp output (and no longer use index of -1); added calculations of mer_hat_trace

Revision 1295 - Directory Listing
Modified Fri Jun 9 21:47:22 2006 UTC (13 years, 5 months ago) by maechler
coercion to and multiplication of diagonal and sparse matrices

Revision 1294 - Directory Listing
Modified Thu Jun 8 16:06:02 2006 UTC (13 years, 5 months ago) by bates
Many changes in mcmcsample and other places

Revision 1293 - Directory Listing
Modified Thu Jun 8 16:05:41 2006 UTC (13 years, 5 months ago) by bates
No longer create a generic for qqmath; add deviance to mcmcsamp

Revision 1292 - Directory Listing
Modified Thu Jun 8 16:04:50 2006 UTC (13 years, 5 months ago) by bates
No longer create a generic for qqmath

Revision 1291 - Directory Listing
Modified Thu Jun 8 16:04:09 2006 UTC (13 years, 5 months ago) by bates
Change the Depends:

Revision 1290 - Directory Listing
Modified Thu Jun 8 09:30:21 2006 UTC (13 years, 5 months ago) by maechler
implemented all 4 of {rowSums(), ... colMeans()}

Revision 1289 - Directory Listing
Modified Tue Jun 6 14:48:37 2006 UTC (13 years, 5 months ago) by maechler
R >= 2.4 needs more hacking for base::as.matrix assignment

Revision 1288 - Directory Listing
Modified Thu Jun 1 20:41:20 2006 UTC (13 years, 5 months ago) by bates
add reference line and grid to qqmath method for ranef.lmer

Revision 1287 - Directory Listing
Modified Tue May 30 23:23:24 2006 UTC (13 years, 5 months ago) by bates


Revision 1286 - Directory Listing
Modified Tue May 30 16:00:35 2006 UTC (13 years, 5 months ago) by bates
Functions to allow nested grouping factors to be specified as (1|foo/bar)

Revision 1285 - Directory Listing
Modified Sat May 27 20:12:08 2006 UTC (13 years, 5 months ago) by maechler
a few small changes, comments - on the way to get to a better "Compare" (group method) approach

Revision 1284 - Directory Listing
Modified Sat May 27 20:01:11 2006 UTC (13 years, 5 months ago) by bates
More careful checks in subbars and friends, code for calculating inbreeding coefficients directly from the pedigree

Revision 1283 - Directory Listing
Modified Sat May 27 19:51:01 2006 UTC (13 years, 5 months ago) by bates
Add isNested and for an identity permutation for nested grouping factors

Revision 1282 - Directory Listing
Modified Wed May 24 17:00:12 2006 UTC (13 years, 6 months ago) by maechler
eliminate a few old "FIXME"s (and add a new one :-)

Revision 1281 - Directory Listing
Modified Wed May 24 14:44:59 2006 UTC (13 years, 6 months ago) by maechler
start massive use of \linkS4class{.}

Revision 1280 - Directory Listing
Modified Tue May 23 08:01:44 2006 UTC (13 years, 6 months ago) by maechler
useDynlib(*, .registration=TRUE)

Revision 1279 - Directory Listing
Modified Tue May 23 08:01:11 2006 UTC (13 years, 6 months ago) by maechler
make compilable

Revision 1278 - Directory Listing
Modified Mon May 22 22:30:11 2006 UTC (13 years, 6 months ago) by bates
Begin isNested

Revision 1277 - Directory Listing
Modified Mon May 22 19:16:12 2006 UTC (13 years, 6 months ago) by bates
Add an implementation of mer_denom_df

Revision 1276 - Directory Listing
Modified Mon May 22 19:14:39 2006 UTC (13 years, 6 months ago) by bates
Copy colcount in CHOLMOD supernodal factorization

Revision 1275 - Directory Listing
Modified Mon May 22 18:58:08 2006 UTC (13 years, 6 months ago) by bates
Compile the check module for CHOLMOD

Revision 1274 - Directory Listing
Modified Mon May 22 18:57:35 2006 UTC (13 years, 6 months ago) by bates
Add a generic for qqmath (maybe not a good idea)

Revision 1273 - Directory Listing
Modified Mon May 22 18:56:23 2006 UTC (13 years, 6 months ago) by bates
Copy colcount in CHOLMOD supernodal factorization

Revision 1272 - Directory Listing
Modified Sat May 20 11:34:18 2006 UTC (13 years, 6 months ago) by bates
Initial denom_df attempt

Revision 1271 - Directory Listing
Modified Thu May 18 06:47:09 2006 UTC (13 years, 6 months ago) by maechler
some  "sparse <-> graph"  updates

Revision 1270 - Directory Listing
Modified Thu May 18 06:44:43 2006 UTC (13 years, 6 months ago) by maechler
cosmetic, comments

Revision 1269 - Directory Listing
Modified Thu May 18 06:43:29 2006 UTC (13 years, 6 months ago) by maechler
a few more tests

Revision 1268 - Directory Listing
Modified Wed May 17 17:42:09 2006 UTC (13 years, 6 months ago) by bates
lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor

Revision 1267 - Directory Listing
Modified Tue May 16 19:12:13 2006 UTC (13 years, 6 months ago) by bates
single argument [t]crossprod now returns a symmetric matrix

Revision 1266 - Directory Listing
Modified Tue May 16 19:11:00 2006 UTC (13 years, 6 months ago) by bates
Added check on sire and dam indices to pedigree function and class validation function

Revision 1265 - Directory Listing
Modified Mon May 15 22:36:59 2006 UTC (13 years, 6 months ago) by bates
Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band

Revision 1264 - Directory Listing
Modified Mon May 15 21:05:20 2006 UTC (13 years, 6 months ago) by maechler
Tsparse indexing fix

Revision 1263 - Directory Listing
Modified Sun Apr 30 15:41:02 2006 UTC (13 years, 6 months ago) by bates
Add chol method for pedigree objects

Revision 1262 - Directory Listing
Modified Sun Apr 30 15:40:39 2006 UTC (13 years, 6 months ago) by bates
Add special solve method for unit upper triangular matrices

Revision 1261 - Directory Listing
Modified Sun Apr 30 15:39:44 2006 UTC (13 years, 6 months ago) by bates
Add chol method for pedigree objects

Revision 1260 - Directory Listing
Modified Tue Apr 25 18:43:13 2006 UTC (13 years, 7 months ago) by bates
Extend example and add references for pedigree-class

Revision 1259 - Directory Listing
Modified Tue Apr 25 18:42:22 2006 UTC (13 years, 7 months ago) by bates
Unit diagonal property in transpose of dtCMatrix

Revision 1258 - Directory Listing
Modified Fri Apr 21 15:44:39 2006 UTC (13 years, 7 months ago) by maechler
make pedigree class more memory-efficient; add pedigree()

Revision 1257 - Directory Listing
Modified Wed Apr 19 14:22:07 2006 UTC (13 years, 7 months ago) by bates
document qqmath method for ranef.lmer objects

Revision 1256 - Directory Listing
Modified Wed Apr 19 14:19:29 2006 UTC (13 years, 7 months ago) by bates
nz component of cs structure should be -1 for a compressed column-oriented matrix

Revision 1255 - Directory Listing
Modified Wed Apr 19 14:16:59 2006 UTC (13 years, 7 months ago) by bates
Remove postVar generic and methods

Revision 1254 - Directory Listing
Modified Wed Apr 19 09:17:50 2006 UTC (13 years, 7 months ago) by maechler
+ solve methods

Revision 1253 - Directory Listing
Modified Wed Apr 19 09:17:14 2006 UTC (13 years, 7 months ago) by maechler
tT -> tC; and diagU2N() for solve(<dtC>)

Revision 1252 - Directory Listing
Modified Sat Apr 15 13:47:09 2006 UTC (13 years, 7 months ago) by bates
Remove redundant #include "cs.h" directives.

Revision 1251 - Directory Listing
Modified Sat Apr 15 13:08:26 2006 UTC (13 years, 7 months ago) by bates
Add CSparse-based solve methods for dtCMatrix class

Revision 1250 - Directory Listing
Modified Sat Apr 15 13:01:24 2006 UTC (13 years, 7 months ago) by bates
Add CSparse library and utilities

Revision 1249 - Directory Listing
Modified Sat Apr 15 12:50:20 2006 UTC (13 years, 7 months ago) by bates
modified indentation

Revision 1248 - Directory Listing
Modified Thu Apr 13 22:05:22 2006 UTC (13 years, 7 months ago) by bates
C code for inverse of sparse, unit, lower triangular matrices (pattern only at present)

Revision 1247 - Directory Listing
Modified Thu Apr 13 11:12:51 2006 UTC (13 years, 7 months ago) by bates
pedigree class added

Revision 1246 - Directory Listing
Modified Wed Apr 12 22:11:14 2006 UTC (13 years, 7 months ago) by bates
Initial version of methods for the pedigree class.  The most important
method is the coercion to the dtCMatrix class.

Revision 1245 - Directory Listing
Modified Wed Apr 12 20:31:18 2006 UTC (13 years, 7 months ago) by maechler
fix for <sparse> %*% <integer_matrix>

Revision 1244 - Directory Listing
Modified Wed Apr 12 12:28:04 2006 UTC (13 years, 7 months ago) by bates
Changing address

Revision 1243 - Directory Listing
Modified Sun Apr 9 00:02:26 2006 UTC (13 years, 7 months ago) by bates
Added qqmath method for ranef.lmer and postVar for ranef methods

Revision 1242 - Directory Listing
Modified Mon Apr 3 20:52:02 2006 UTC (13 years, 7 months ago) by bates
Added a qqmath method for the ranef.lmer class.

Revision 1241 - Directory Listing
Modified Mon Apr 3 20:51:37 2006 UTC (13 years, 7 months ago) by bates
Added a qqmath method for the ranef.lmer class.

Revision 1240 - Directory Listing
Modified Sun Apr 2 23:45:47 2006 UTC (13 years, 7 months ago) by bates
Add warning about ignored arguments to coef method for lmer

Revision 1239 - Directory Listing
Modified Fri Mar 31 09:37:49 2006 UTC (13 years, 7 months ago) by maechler
fix some \link[*-class]{*}

Revision 1238 - Directory Listing
Modified Thu Mar 30 19:56:09 2006 UTC (13 years, 7 months ago) by maechler
coercions from dgC to triangular (dtC) and symmetric (dsC), etc

Revision 1237 - Directory Listing
Modified Thu Mar 30 15:23:47 2006 UTC (13 years, 7 months ago) by maechler
new interesting test dataset

Revision 1236 - Directory Listing
Modified Thu Mar 23 15:16:17 2006 UTC (13 years, 8 months ago) by bates
Propagate DimNames in dsyMatrix_as_dspMatrix

Revision 1235 - Directory Listing
Modified Tue Mar 21 17:15:53 2006 UTC (13 years, 8 months ago) by maechler
update ("coef.lmer" class etc)

Revision 1234 - Directory Listing
Modified Tue Mar 21 12:33:28 2006 UTC (13 years, 8 months ago) by bates
Change name of lmer.ranef class to ranef.lmer, add coef.lmer and update plot methods for these classes

Revision 1233 - Directory Listing
Modified Tue Mar 21 11:23:49 2006 UTC (13 years, 8 months ago) by bates
Updated the ToDo list to mention pedigree, lmer and glmer classes.

Revision 1232 - Directory Listing
Modified Tue Mar 21 11:07:55 2006 UTC (13 years, 8 months ago) by bates
modifying return value of ranef method and adding residuals method

Revision 1231 - Directory Listing
Modified Sat Mar 18 17:41:34 2006 UTC (13 years, 8 months ago) by bates
Trivial change in documentation of a function

Revision 1230 - Directory Listing
Modified Thu Mar 16 20:03:41 2006 UTC (13 years, 8 months ago) by bates
Fix dpotrf call for BLAS under Mac OS X

Revision 1229 - Directory Listing
Modified Wed Mar 15 17:44:21 2006 UTC (13 years, 8 months ago) by maechler
oops; was added accidentally

Revision 1228 - Directory Listing
Modified Wed Mar 15 17:43:34 2006 UTC (13 years, 8 months ago) by maechler
put "mm" and "y" datasets into list "KNex" and change the docu, examples, tests, and one vignette accordingly;
 ready for release of 0.995-6

Revision 1227 - Directory Listing
Modified Wed Mar 15 17:42:03 2006 UTC (13 years, 8 months ago) by maechler
use  isPacked() [internal] instead of private class "packedMatrix"

Revision 1226 - Directory Listing
Modified Mon Mar 13 14:07:58 2006 UTC (13 years, 8 months ago) by maechler
sparse: "[<-" and better arithmetic; other tweaks

Revision 1225 - Directory Listing
Modified Mon Mar 13 14:06:17 2006 UTC (13 years, 8 months ago) by maechler
enable M[M < 10] for dense

Revision 1224 - Directory Listing
Modified Mon Mar 13 13:05:33 2006 UTC (13 years, 8 months ago) by bates
Update documentation to new lmer class structure

Revision 1223 - Directory Listing
Modified Tue Mar 7 11:06:46 2006 UTC (13 years, 8 months ago) by maechler
lmer(): dropped non-sensical 'x' and 'y' arguments

Revision 1222 - Directory Listing
Modified Tue Mar 7 11:05:08 2006 UTC (13 years, 8 months ago) by maechler
lmer(): non-trivial summary() method -> summary.*mer classes

Revision 1220 - Directory Listing
Modified Fri Mar 3 18:22:35 2006 UTC (13 years, 8 months ago) by maechler
add more docu on (l)mer - methods

Revision 1219 - Directory Listing
Modified Wed Feb 22 08:21:09 2006 UTC (13 years, 9 months ago) by maechler
use R_ARCH for R-devel

Revision 1218 - Directory Listing
Modified Mon Feb 20 22:47:20 2006 UTC (13 years, 9 months ago) by bates
Used cholmod_vertcat and cholmod_horzcat for cbind2 and rbind2 in the dsparseMatrix virtual class

Revision 1217 - Directory Listing
Modified Fri Feb 10 16:58:35 2006 UTC (13 years, 9 months ago) by maechler
getting rid of warnings; other cosmetic

Revision 1216 - Directory Listing
Modified Wed Feb 8 17:57:31 2006 UTC (13 years, 9 months ago) by maechler
another half-baked lmer test; cosmetics

Revision 1215 - Directory Listing
Modified Wed Feb 8 17:54:57 2006 UTC (13 years, 9 months ago) by maechler
add simplistic "[<-" method for dgT

Revision 1214 - Directory Listing
Modified Wed Feb 8 07:43:07 2006 UTC (13 years, 9 months ago) by maechler
require(utils) in .OnLoad()

Revision 1213 - Directory Listing
Modified Tue Feb 7 23:44:07 2006 UTC (13 years, 9 months ago) by bates
Fix case of cbind(successes, failures) for lmer fitting a GLMM (see Changelog)

Revision 1210 - Directory Listing
Modified Thu Jan 26 08:21:46 2006 UTC (13 years, 9 months ago) by maechler
Date++

Revision 1209 - Directory Listing
Modified Wed Jan 25 23:42:57 2006 UTC (13 years, 9 months ago) by bates
Use coersion for transpose of dtCMatrix class

Revision 1208 - Directory Listing
Modified Wed Jan 25 15:19:29 2006 UTC (13 years, 9 months ago) by bates
Move dtTMatrix_to_dtCMatrix to CHOLMOD code

Revision 1207 - Directory Listing
Modified Wed Jan 25 08:39:10 2006 UTC (13 years, 9 months ago) by maechler
comment in simple.R; ready for 0.995-4 release

Revision 1206 - Directory Listing
Modified Tue Jan 24 23:02:36 2006 UTC (13 years, 10 months ago) by bates
Initialize result of dgeMatrix_crossprod

Revision 1205 - Directory Listing
Modified Tue Jan 24 21:03:04 2006 UTC (13 years, 10 months ago) by bates
Fix trivial memory leaks

Revision 1204 - Directory Listing
Modified Tue Jan 24 17:48:18 2006 UTC (13 years, 10 months ago) by bates
Fix trivial memory leak

Revision 1202 - Directory Listing
Modified Mon Jan 23 16:55:43 2006 UTC (13 years, 10 months ago) by maechler
add to tests: now also check  setAs("matrix", *)

Revision 1201 - Directory Listing
Modified Mon Jan 23 16:04:12 2006 UTC (13 years, 10 months ago) by maechler
Class cleanup; particularly ldense* ones

Revision 1200 - Directory Listing
Modified Mon Jan 23 16:01:20 2006 UTC (13 years, 10 months ago) by maechler
make*_(triangular|symmetric) : now for ldense* as well

Revision 1199 - Directory Listing
Modified Mon Jan 23 15:02:13 2006 UTC (13 years, 10 months ago) by maechler
export RsparseMatrix

Revision 1198 - Directory Listing
Modified Mon Jan 23 15:01:02 2006 UTC (13 years, 10 months ago) by maechler
no 'factors' slot in l2d_Matrix / d2l_Matrix

Revision 1197 - Directory Listing
Modified Mon Jan 23 13:43:15 2006 UTC (13 years, 10 months ago) by bates
Version 0.995-3

Revision 1196 - Directory Listing
Modified Sun Jan 22 14:52:05 2006 UTC (13 years, 10 months ago) by bates
fix valgrind-detected memory leak

Revision 1195 - Directory Listing
Modified Sun Jan 22 14:16:38 2006 UTC (13 years, 10 months ago) by bates
Be more conservative by running cholmod_sort before cholmod_nnz

Revision 1194 - Directory Listing
Modified Sun Jan 22 14:16:04 2006 UTC (13 years, 10 months ago) by bates
Fixing memory leaks

Revision 1193 - Directory Listing
Modified Sat Jan 21 21:43:13 2006 UTC (13 years, 10 months ago) by bates
Free memory allocated in csc_tcrossprod

Revision 1192 - Directory Listing
Modified Fri Jan 20 20:56:46 2006 UTC (13 years, 10 months ago) by maechler
Version ++

Revision 1191 - Directory Listing
Modified Fri Jan 20 19:47:10 2006 UTC (13 years, 10 months ago) by bates
Use cholmod_copy in csc_tcrossprod

Revision 1190 - Directory Listing
Modified Fri Jan 20 19:46:38 2006 UTC (13 years, 10 months ago) by bates
Clean up documentation

Revision 1189 - Directory Listing
Modified Fri Jan 20 18:13:39 2006 UTC (13 years, 10 months ago) by maechler
"dsy" no longer extends "dge"; other small fixes

Revision 1188 - Directory Listing
Modified Fri Jan 20 18:12:04 2006 UTC (13 years, 10 months ago) by maechler
fix mcmcsamp(*, saveb=TRUE)

Revision 1187 - Directory Listing
Modified Thu Jan 19 22:10:55 2006 UTC (13 years, 10 months ago) by maechler
fix that other old bug that crept into 2nd last fix

Revision 1186 - Directory Listing
Modified Thu Jan 19 22:06:38 2006 UTC (13 years, 10 months ago) by maechler
+ "{"

Revision 1185 - Directory Listing
Modified Thu Jan 19 22:02:53 2006 UTC (13 years, 10 months ago) by maechler
restitute cholmod_common declaration to setting 0.99-6

Revision 1183 - Directory Listing
Modified Thu Jan 19 10:35:44 2006 UTC (13 years, 10 months ago) by maechler
Date++

Revision 1182 - Directory Listing
Modified Thu Jan 19 10:35:09 2006 UTC (13 years, 10 months ago) by maechler
s/example/examples/

Revision 1181 - Directory Listing
Modified Thu Jan 19 08:35:48 2006 UTC (13 years, 10 months ago) by maechler
+ test for 0.995-1 log(.) failure

Revision 1180 - Directory Listing
Modified Thu Jan 19 00:43:37 2006 UTC (13 years, 10 months ago) by bates
Over to Martin for release 0.995-2

Revision 1178 - Directory Listing
Modified Wed Jan 18 15:38:12 2006 UTC (13 years, 10 months ago) by bates
Modifications to lmer.R - still not working

Revision 1177 - Directory Listing
Modified Wed Jan 18 07:35:10 2006 UTC (13 years, 10 months ago) by maechler
ALL_CFLAGS += -O2

Revision 1176 - Directory Listing
Modified Wed Jan 18 07:31:41 2006 UTC (13 years, 10 months ago) by maechler
correct LAPACK_LIBS (didn't change all in r2189)

Revision 1175 - Directory Listing
Modified Tue Jan 17 23:41:36 2006 UTC (13 years, 10 months ago) by bates
Munging the data frame

Revision 1174 - Directory Listing
Modified Mon Jan 16 20:03:48 2006 UTC (13 years, 10 months ago) by maechler
make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings

Revision 1173 - Directory Listing
Modified Mon Jan 16 20:02:16 2006 UTC (13 years, 10 months ago) by maechler
remove @rcond everywhere, and @factors for triangular ones

Revision 1171 - Directory Listing
Modified Mon Jan 16 16:59:46 2006 UTC (13 years, 10 months ago) by bates
Extract the slot contents from S4 objects, not the component

Revision 1170 - Directory Listing
Modified Mon Jan 16 16:38:00 2006 UTC (13 years, 10 months ago) by bates
Throw an error for mcmcsamp on a GLMM, at least until it is implemented

Revision 1169 - Directory Listing
Modified Mon Jan 16 14:41:55 2006 UTC (13 years, 10 months ago) by bates
Really only need R-2.2.0 (for nlminb)

Revision 1168 - Directory Listing
Modified Mon Jan 16 14:40:39 2006 UTC (13 years, 10 months ago) by bates
Modifications to propagate column names from an mer object to a VarCorr summary

Revision 1167 - Directory Listing
Modified Sun Jan 15 21:13:54 2006 UTC (13 years, 10 months ago) by bates
Removing rcond slot from Matrix objects

Revision 1166 - Directory Listing
Modified Sun Jan 15 19:18:20 2006 UTC (13 years, 10 months ago) by bates
modifications to lmer and related classes

Revision 1165 - Directory Listing
Modified Sat Jan 14 23:41:55 2006 UTC (13 years, 10 months ago) by maechler
new coercion to dtr* and dsy* using isSymmetric() and isTriangular(); fix validity checking; some class descriptions

Revision 1164 - Directory Listing
Modified Sat Jan 14 23:40:42 2006 UTC (13 years, 10 months ago) by maechler
new dMatrix_validate and dense_nonpacked_validate

Revision 1163 - Directory Listing
Modified Sat Jan 14 23:13:20 2006 UTC (13 years, 10 months ago) by maechler
export comp*- and general- Matrix classes

Revision 1162 - Directory Listing
Modified Fri Jan 13 23:47:38 2006 UTC (13 years, 10 months ago) by bates
Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs

Revision 1161 - Directory Listing
Modified Fri Jan 13 23:46:29 2006 UTC (13 years, 10 months ago) by bates
Preparation for new version

Revision 1160 - Directory Listing
Modified Fri Jan 13 23:45:45 2006 UTC (13 years, 10 months ago) by bates
Updating the list of slots on factorable and non-factorable classes

Revision 1159 - Directory Listing
Modified Fri Jan 13 23:44:16 2006 UTC (13 years, 10 months ago) by bates
Updating the list of slots now that the factor slot is moved to compMatrix

Revision 1158 - Directory Listing
Modified Fri Jan 13 13:13:09 2006 UTC (13 years, 10 months ago) by maechler
Linking change for R-devel (windows), thanks to BDR

Revision 1157 - Directory Listing
Modified Thu Jan 12 23:41:20 2006 UTC (13 years, 10 months ago) by bates
Don't use .registration in useDynLib until 2.3.0 has been released

Revision 1156 - Directory Listing
Modified Thu Jan 12 23:39:56 2006 UTC (13 years, 10 months ago) by bates
Remove redundant registration of dspMatrix_trf; incorporate wts and wrkres slots in mer class

Revision 1152 - Directory Listing
Modified Thu Jan 12 07:56:14 2006 UTC (13 years, 10 months ago) by maechler
0.995 ; util; R >= 2.3.0

Revision 1151 - Directory Listing
Modified Thu Jan 12 07:31:55 2006 UTC (13 years, 10 months ago) by maechler
use "$(MAKE)", not "make" in Makefiles; needed eg on *BSD for "gmake"

Revision 1150 - Directory Listing
Modified Thu Jan 12 03:41:25 2006 UTC (13 years, 10 months ago) by bates
Switch to supernodal Cholesky representation of mer objects

Revision 1149 - Directory Listing
Modified Thu Jan 12 03:40:07 2006 UTC (13 years, 10 months ago) by bates
Updating documentation for new version of mer objects

Revision 1148 - Directory Listing
Modified Thu Jan 12 03:37:40 2006 UTC (13 years, 10 months ago) by bates
Incorporation of correlation class

Revision 1147 - Directory Listing
Modified Thu Jan 12 03:36:53 2006 UTC (13 years, 10 months ago) by bates
Removal of dgBCMatrix class and coercion function

Revision 1146 - Directory Listing
Modified Thu Jan 12 03:35:32 2006 UTC (13 years, 10 months ago) by bates
Updating documentation for new version of mer objects

Revision 1145 - Directory Listing
Modified Thu Jan 12 03:26:06 2006 UTC (13 years, 10 months ago) by bates
Remove dgBCMatrix.[ch] and dependencies

Revision 1144 - Directory Listing
Modified Thu Jan 12 03:20:47 2006 UTC (13 years, 10 months ago) by bates
Remove documentation for outmoded classes

Revision 1143 - Directory Listing
Modified Thu Jan 12 03:17:24 2006 UTC (13 years, 10 months ago) by bates
Switch to supernodal Cholesky representation of mer objects

Revision 1142 - Directory Listing
Modified Thu Jan 12 03:10:29 2006 UTC (13 years, 10 months ago) by bates
Remove dgBCMatrix.[ch] and dependencies

Revision 1141 - Directory Listing
Modified Thu Jan 12 03:02:46 2006 UTC (13 years, 10 months ago) by bates
Change malloc to Calloc in chm_common.c and correspondingly free to Free there and elsewhere

Revision 1127 - Directory Listing
Modified Tue Jan 10 18:11:23 2006 UTC (13 years, 10 months ago) by maechler
add ", drop = FALSE" in lmer.coef constructions; plus a few comments

Revision 1123 - Directory Listing
Modified Tue Jan 10 17:04:29 2006 UTC (13 years, 10 months ago) by bates
Release 0.99-6

Revision 1119 - Directory Listing
Modified Sat Jan 7 19:52:37 2006 UTC (13 years, 10 months ago) by bates
Fix due to Peter Dalgaard for segfault with multiple non-nested grouping factors; Version 0.99-5

Revision 1109 - Directory Listing
Modified Tue Jan 3 16:42:31 2006 UTC (13 years, 10 months ago) by maechler
"diagonalMatrix" class and subclasses with a few methods; very basic "ltTMatrix" methods

Revision 1108 - Directory Listing
Modified Mon Jan 2 23:02:07 2006 UTC (13 years, 10 months ago) by maechler
isSymmetric() generic must match isSymmetric in R-devel

Revision 1107 - Directory Listing
Modified Mon Jan 2 22:59:40 2006 UTC (13 years, 10 months ago) by maechler
work with more stringent all.equal()

Revision 1106 - Directory Listing
Modified Mon Jan 2 13:58:00 2006 UTC (13 years, 10 months ago) by maechler
depend on "utils"; new version for ready for CRAN

Revision 1105 - Directory Listing
Modified Mon Jan 2 13:57:22 2006 UTC (13 years, 10 months ago) by maechler
add check for dgeMatrix-methods of tcrossprod()

Revision 1104 - Directory Listing
Modified Mon Jan 2 13:56:55 2006 UTC (13 years, 10 months ago) by maechler
drop extraneous code

Revision 1101 - Directory Listing
Modified Thu Dec 29 20:05:37 2005 UTC (13 years, 10 months ago) by maechler
dgeMatrix_matrix_crossprod(*, trans)

Revision 1098 - Directory Listing
Modified Thu Dec 29 11:38:59 2005 UTC (13 years, 10 months ago) by maechler
some 2-argument-tcrossprod methods (and test svn)

Revision 1097 - Directory Listing
Modified Thu Dec 29 10:34:00 2005 UTC (13 years, 10 months ago) by maechler
update (and test svn R-packages)

Revision 1091 - Directory Listing
Modified Mon Dec 12 13:59:58 2005 UTC (13 years, 11 months ago) by maechler
update

Revision 1090 - Directory Listing
Modified Mon Dec 12 13:58:10 2005 UTC (13 years, 11 months ago) by maechler
Brian's version of 2-arg tcrossprod()

Revision 1087 - Directory Listing
Modified Fri Dec 9 20:55:39 2005 UTC (13 years, 11 months ago) by maechler
make tcrossprod() use 2 arguments (x, y=NULL)

Revision 1086 - Directory Listing
Modified Fri Dec 9 16:23:13 2005 UTC (13 years, 11 months ago) by maechler
new Version (needed for build)

Revision 1085 - Directory Listing
Modified Fri Dec 9 16:08:00 2005 UTC (13 years, 11 months ago) by maechler
minor additions

Revision 1084 - Directory Listing
Modified Fri Dec 9 15:41:00 2005 UTC (13 years, 11 months ago) by maechler
thinko in dimNamesCheck()

Revision 1067 - Directory Listing
Modified Mon Nov 28 16:27:29 2005 UTC (13 years, 11 months ago) by bates
Added crossprod method for Csparse and dense

Revision 1063 - Directory Listing
Modified Sat Nov 26 16:29:39 2005 UTC (13 years, 11 months ago) by bates
Add zapsmall method

Revision 1062 - Directory Listing
Modified Sat Nov 26 16:29:06 2005 UTC (13 years, 11 months ago) by bates
simulate generic is now in stats package

Revision 1061 - Directory Listing
Modified Wed Nov 23 22:21:32 2005 UTC (14 years ago) by bates
perfunctory test for sparse matrix multiplication

Revision 1060 - Directory Listing
Modified Wed Nov 23 22:21:02 2005 UTC (14 years ago) by bates
simplify the call to print

Revision 1059 - Directory Listing
Modified Wed Nov 23 22:20:13 2005 UTC (14 years ago) by bates
Matrix multiplication and coersion at higher level

Revision 1056 - Directory Listing
Modified Tue Nov 22 16:40:49 2005 UTC (14 years ago) by maechler
require(methods) needed according to the docs

Revision 1053 - Directory Listing
Modified Mon Nov 14 22:21:04 2005 UTC (14 years ago) by bates
Release 0.99-2

Revision 1052 - Directory Listing
Modified Mon Nov 14 17:11:13 2005 UTC (14 years ago) by maechler
SystemRequirements: GNU make

Revision 1048 - Directory Listing
Modified Sat Nov 12 16:44:04 2005 UTC (14 years ago) by bates
Test for both BLAS_LIBS and LAPACK_LIBS

Revision 1047 - Directory Listing
Modified Sat Nov 12 12:35:55 2005 UTC (14 years ago) by maechler
revert to original (-r1820)

Revision 1046 - Directory Listing
Modified Sat Nov 12 12:07:53 2005 UTC (14 years ago) by maechler
lsame.f needed for z*.f - only if not BLAS_LIBS

Revision 1041 - Directory Listing
Modified Fri Nov 11 21:45:50 2005 UTC (14 years ago) by maechler
use $(.)

Revision 1039 - Directory Listing
Modified Fri Nov 11 21:22:49 2005 UTC (14 years ago) by bates
Release 0.99-2

Revision 1038 - Directory Listing
Modified Fri Nov 11 21:22:08 2005 UTC (14 years ago) by bates
Adding PACKAGE = to .Call

Revision 1037 - Directory Listing
Modified Fri Nov 11 14:57:22 2005 UTC (14 years ago) by bates
Adding PACKAGE = to .Call lines

Revision 1033 - Directory Listing
Modified Wed Nov 9 22:39:33 2005 UTC (14 years ago) by bates
typo

Revision 1032 - Directory Listing
Modified Wed Nov 9 17:55:53 2005 UTC (14 years ago) by maechler
need for "extern" (by Brian)

Revision 1031 - Directory Listing
Modified Wed Nov 9 17:50:06 2005 UTC (14 years ago) by maechler
using malloc & free & variable "dofree"

Revision 1030 - Directory Listing
Modified Wed Nov 9 17:48:24 2005 UTC (14 years ago) by maechler
Windows "make" extensions (based on Brian`s)

Revision 1029 - Directory Listing
Modified Wed Nov 9 15:26:22 2005 UTC (14 years ago) by maechler
use free() to clean up after  as_cholmod_*() since these use malloc() - as in Brian`s patch

Revision 1027 - Directory Listing
Modified Tue Nov 8 23:13:17 2005 UTC (14 years ago) by bates
New release

Revision 1026 - Directory Listing
Modified Tue Nov 8 23:12:38 2005 UTC (14 years ago) by bates
Moving CHOLMOD User Guide

Revision 1025 - Directory Listing
Modified Tue Nov 8 23:11:59 2005 UTC (14 years ago) by bates
Moving CHOLMOD User Guide

Revision 1024 - Directory Listing
Modified Tue Nov 8 23:09:13 2005 UTC (14 years ago) by bates
New version of Makefile.win

Revision 1023 - Directory Listing
Modified Tue Nov 8 23:07:36 2005 UTC (14 years ago) by bates
Remove entire UFconfig directory

Revision 1022 - Directory Listing
Modified Tue Nov 8 20:49:59 2005 UTC (14 years ago) by bates
Modifying CHOLMOD Makefiles and directories

Revision 1021 - Directory Listing
Modified Tue Nov 8 19:40:59 2005 UTC (14 years ago) by bates
Removing unused directory

Revision 1020 - Directory Listing
Modified Tue Nov 8 19:40:36 2005 UTC (14 years ago) by bates
Removing unused directory

Revision 1019 - Directory Listing
Modified Tue Nov 8 19:28:07 2005 UTC (14 years ago) by bates


Revision 1018 - Directory Listing
Modified Tue Nov 8 19:27:47 2005 UTC (14 years ago) by bates


Revision 1017 - Directory Listing
Modified Tue Nov 8 19:17:19 2005 UTC (14 years ago) by bates


Revision 1016 - Directory Listing
Modified Tue Nov 8 19:13:56 2005 UTC (14 years ago) by bates
Removing the test matrix directory

Revision 1015 - Directory Listing
Modified Tue Nov 8 18:21:45 2005 UTC (14 years ago) by bates
Moving AMD docs to inst/doc

Revision 1014 - Directory Listing
Modified Tue Nov 8 18:21:28 2005 UTC (14 years ago) by bates
Moving AMD docs to inst/doc

Revision 1013 - Directory Listing
Modified Tue Nov 8 13:33:44 2005 UTC (14 years ago) by bates
Use Calloc/Free, not malloc/Free

Revision 990 - Directory Listing
Modified Tue Oct 25 22:42:32 2005 UTC (14 years, 1 month ago) by bates
Comment out test on outer because of changes in R-2.3.0

Revision 989 - Directory Listing
Modified Tue Oct 25 17:39:26 2005 UTC (14 years, 1 month ago) by bates
munging the Makefiles

Revision 988 - Directory Listing
Modified Tue Oct 25 17:39:01 2005 UTC (14 years, 1 month ago) by bates
need a drop = FALSE in a subscripting operation

Revision 987 - Directory Listing
Modified Tue Oct 25 17:38:46 2005 UTC (14 years, 1 month ago) by bates
need a drop = FALSE in a subscripting operation

Revision 986 - Directory Listing
Modified Fri Oct 21 19:36:30 2005 UTC (14 years, 1 month ago) by bates
Remove references to mer2 and mltloc.rda which are now in a branch

Revision 984 - Directory Listing
Modified Tue Oct 11 18:08:46 2005 UTC (14 years, 1 month ago) by bates
Tidying up

Revision 983 - Directory Listing
Modified Tue Oct 11 15:19:20 2005 UTC (14 years, 1 month ago) by bates
Remove references to Pattern.[ch]

Revision 982 - Directory Listing
Modified Tue Oct 11 15:18:23 2005 UTC (14 years, 1 month ago) by bates
Remove references to Pattern.[ch]

Revision 981 - Directory Listing
Modified Tue Oct 11 14:12:19 2005 UTC (14 years, 1 month ago) by bates
Evaluate model frame before glm model of fixed effects

Revision 980 - Directory Listing
Modified Tue Oct 11 14:11:44 2005 UTC (14 years, 1 month ago) by bates
Remove Pattern sources that are no longer needed

Revision 979 - Directory Listing
Modified Tue Oct 11 00:02:45 2005 UTC (14 years, 1 month ago) by bates
Added a FIXME - will fix later

Revision 978 - Directory Listing
Modified Mon Oct 10 13:54:09 2005 UTC (14 years, 1 month ago) by bates
More mer2 modifications

Revision 977 - Directory Listing
Modified Fri Oct 7 22:14:47 2005 UTC (14 years, 1 month ago) by bates
mer2_initial

Revision 976 - Directory Listing
Modified Fri Oct 7 20:18:29 2005 UTC (14 years, 1 month ago) by maechler
more examples; update

Revision 975 - Directory Listing
Modified Fri Oct 7 20:18:14 2005 UTC (14 years, 1 month ago) by maechler
comment

Revision 974 - Directory Listing
Modified Fri Oct 7 20:17:46 2005 UTC (14 years, 1 month ago) by maechler
symm. -> pos.def. test:not yet

Revision 973 - Directory Listing
Modified Fri Oct 7 20:15:08 2005 UTC (14 years, 1 month ago) by maechler
isSymmetric() & simulate() updates; sparse subsetting

Revision 972 - Directory Listing
Modified Fri Oct 7 20:13:24 2005 UTC (14 years, 1 month ago) by maechler
comments and more (hidden) as.Matrix utilities

Revision 971 - Directory Listing
Modified Fri Oct 7 15:40:21 2005 UTC (14 years, 1 month ago) by maechler
add BLAS zherk.f because it's not (yet) in R

Revision 970 - Directory Listing
Modified Fri Oct 7 14:20:23 2005 UTC (14 years, 1 month ago) by bates
Added a factorization in mer2_create so the permutation could be applied to Z'X and Z'y

Revision 969 - Directory Listing
Modified Thu Oct 6 23:34:20 2005 UTC (14 years, 1 month ago) by bates
Permutation of Z'X and Z'y in mer2_factor

Revision 968 - Directory Listing
Modified Thu Oct 6 23:33:25 2005 UTC (14 years, 1 month ago) by bates
nrow, not ncol

Revision 967 - Directory Listing
Modified Thu Oct 6 03:07:23 2005 UTC (14 years, 1 month ago) by bates
More updates on lmer - still not quite correct

Revision 966 - Directory Listing
Modified Thu Oct 6 03:06:40 2005 UTC (14 years, 1 month ago) by bates
Routines missing from the lapack module sources

Revision 965 - Directory Listing
Modified Wed Oct 5 16:57:55 2005 UTC (14 years, 1 month ago) by maechler
(comments)

Revision 964 - Directory Listing
Modified Mon Oct 3 20:35:52 2005 UTC (14 years, 1 month ago) by maechler
new and better error mesage when info

Revision 963 - Directory Listing
Modified Mon Oct 3 01:44:56 2005 UTC (14 years, 1 month ago) by bates
Modifications to mer2

Revision 962 - Directory Listing
Modified Mon Oct 3 01:44:14 2005 UTC (14 years, 1 month ago) by bates
Multilocation data from Mark Lyman

Revision 961 - Directory Listing
Modified Sat Oct 1 20:11:51 2005 UTC (14 years, 1 month ago) by maechler
explain difference between logical(crossprod()) and crossprod(logical())

Revision 960 - Directory Listing
Modified Sat Oct 1 20:10:45 2005 UTC (14 years, 1 month ago) by maechler
cosmetic

Revision 959 - Directory Listing
Modified Sat Oct 1 20:10:20 2005 UTC (14 years, 1 month ago) by maechler
dtC -> dgC coercion

Revision 958 - Directory Listing
Modified Sat Oct 1 20:08:51 2005 UTC (14 years, 1 month ago) by maechler
add "self-documenting" argument names

Revision 957 - Directory Listing
Modified Sat Oct 1 20:08:04 2005 UTC (14 years, 1 month ago) by maechler
check return value from cholmod_aat()   {fix seg.fault}

Revision 956 - Directory Listing
Modified Fri Sep 30 17:28:00 2005 UTC (14 years, 1 month ago) by maechler
more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ...

Revision 955 - Directory Listing
Modified Thu Sep 29 19:32:14 2005 UTC (14 years, 1 month ago) by maechler
duh: LIB was not a name

Revision 954 - Directory Listing
Modified Wed Sep 28 19:34:31 2005 UTC (14 years, 1 month ago) by maechler
more "Compare" and some "!" methods; expm() for sparse; updated tests

Revision 953 - Directory Listing
Modified Wed Sep 28 19:31:36 2005 UTC (14 years, 1 month ago) by maechler
move "factors" slot to "Matrix"

Revision 952 - Directory Listing
Modified Wed Sep 28 19:19:19 2005 UTC (14 years, 1 month ago) by maechler
packed_to_full_(double|int) and full_to_packed_*

Revision 951 - Directory Listing
Modified Wed Sep 28 12:42:51 2005 UTC (14 years, 1 month ago) by maechler
use uplo_P() and diag_P() macros instead of *_value() functions

Revision 950 - Directory Listing
Modified Wed Sep 28 12:42:11 2005 UTC (14 years, 1 month ago) by maechler
+ include

Revision 949 - Directory Listing
Modified Wed Sep 28 09:17:08 2005 UTC (14 years, 1 month ago) by maechler
cleanup

Revision 948 - Directory Listing
Modified Wed Sep 28 08:57:56 2005 UTC (14 years, 1 month ago) by maechler
less test *files*

Revision 947 - Directory Listing
Modified Wed Sep 28 08:57:37 2005 UTC (14 years, 1 month ago) by maechler
t(t(m)) == m and more

Revision 946 - Directory Listing
Modified Wed Sep 28 08:56:42 2005 UTC (14 years, 1 month ago) by maechler
some "Summary" methods; some "Compare" group methods; logical dense matrices

Revision 945 - Directory Listing
Modified Wed Sep 28 08:54:28 2005 UTC (14 years, 1 month ago) by maechler
+ logical dense matrices; more coercions

Revision 944 - Directory Listing
Modified Wed Sep 28 08:54:00 2005 UTC (14 years, 1 month ago) by maechler
fix longstanding typo; new dsT*_as_dgT*

Revision 943 - Directory Listing
Modified Wed Sep 28 08:52:22 2005 UTC (14 years, 1 month ago) by maechler
+ uplo_value(), diag_value()

Revision 942 - Directory Listing
Modified Wed Sep 28 08:43:56 2005 UTC (14 years, 1 month ago) by maechler
add Qidentical()

Revision 941 - Directory Listing
Modified Tue Sep 27 13:28:15 2005 UTC (14 years, 1 month ago) by maechler
new

Revision 940 - Directory Listing
Modified Tue Sep 27 00:50:35 2005 UTC (14 years, 1 month ago) by bates
Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

Revision 939 - Directory Listing
Modified Tue Sep 20 17:23:24 2005 UTC (14 years, 2 months ago) by bates
More careful checking for linear mixed model

Revision 938 - Directory Listing
Modified Tue Sep 20 10:16:53 2005 UTC (14 years, 2 months ago) by maechler
less precision in test; slightly more output

Revision 937 - Directory Listing
Modified Tue Sep 20 10:16:13 2005 UTC (14 years, 2 months ago) by maechler
export more non-Primitive group generics

Revision 936 - Directory Listing
Modified Tue Sep 20 10:15:26 2005 UTC (14 years, 2 months ago) by maechler
move setGeneric to AllGeneric

Revision 935 - Directory Listing
Modified Tue Sep 20 10:14:57 2005 UTC (14 years, 2 months ago) by maechler
update TODOs

Revision 934 - Directory Listing
Modified Tue Sep 20 07:38:22 2005 UTC (14 years, 2 months ago) by maechler
+ stricter 'dense' tests

Revision 933 - Directory Listing
Modified Tue Sep 20 07:15:58 2005 UTC (14 years, 2 months ago) by maechler
+ stricter 'lgC' tests

Revision 932 - Directory Listing
Modified Mon Sep 19 23:04:52 2005 UTC (14 years, 2 months ago) by bates
Updated DEPS.mkf and some include files

Revision 931 - Directory Listing
Modified Mon Sep 19 23:04:14 2005 UTC (14 years, 2 months ago) by bates
Modified tests but still get a mysterious result

Revision 930 - Directory Listing
Modified Mon Sep 19 21:29:37 2005 UTC (14 years, 2 months ago) by bates
corrected error message

Revision 929 - Directory Listing
Modified Mon Sep 19 21:29:08 2005 UTC (14 years, 2 months ago) by bates
Added release information

Revision 928 - Directory Listing
Modified Mon Sep 19 21:10:59 2005 UTC (14 years, 2 months ago) by bates
crossprod and tcrossprod for Tsparse

Revision 927 - Directory Listing
Modified Mon Sep 19 21:09:49 2005 UTC (14 years, 2 months ago) by bates
Fixed a thinko picked up by the compiler

Revision 926 - Directory Listing
Modified Mon Sep 19 21:08:53 2005 UTC (14 years, 2 months ago) by bates
Keep -Wall quiet

Revision 925 - Directory Listing
Modified Mon Sep 19 19:01:31 2005 UTC (14 years, 2 months ago) by maechler
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more  "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

Revision 924 - Directory Listing
Modified Mon Sep 19 08:40:29 2005 UTC (14 years, 2 months ago) by maechler
gTM* -> TsparseM*

Revision 923 - Directory Listing
Modified Sun Sep 18 23:41:45 2005 UTC (14 years, 2 months ago) by bates
More progress on incorporating CHOLMOD - still not passing CMD check

Revision 922 - Directory Listing
Modified Sun Sep 18 16:33:54 2005 UTC (14 years, 2 months ago) by bates
Added CHOLMOD-based C functions.  Still need methods defined in R and some error checking

Revision 921 - Directory Listing
Modified Sat Sep 17 14:27:41 2005 UTC (14 years, 2 months ago) by bates
Sparse Matrix methods using CHOLMOD inside ifdef blocks

Revision 920 - Directory Listing
Modified Fri Sep 16 19:36:51 2005 UTC (14 years, 2 months ago) by bates
Some CHOLMOD utilities

Revision 919 - Directory Listing
Modified Fri Sep 16 17:27:06 2005 UTC (14 years, 2 months ago) by maechler
new compressed_non_0_ij()

Revision 918 - Directory Listing
Modified Thu Sep 15 18:08:59 2005 UTC (14 years, 2 months ago) by bates
More for the TODO list

Revision 917 - Directory Listing
Modified Thu Sep 15 18:03:55 2005 UTC (14 years, 2 months ago) by bates
Document changes

Revision 916 - Directory Listing
Modified Thu Sep 15 17:52:59 2005 UTC (14 years, 2 months ago) by bates
Actually needed the Check module

Revision 915 - Directory Listing
Modified Thu Sep 15 17:45:23 2005 UTC (14 years, 2 months ago) by bates
Removing unneeded directories

Revision 914 - Directory Listing
Modified Thu Sep 15 17:41:38 2005 UTC (14 years, 2 months ago) by bates
Removing unneeded directories

Revision 913 - Directory Listing
Modified Thu Sep 15 17:38:18 2005 UTC (14 years, 2 months ago) by bates
No need for xerbla in R package

Revision 912 - Directory Listing
Modified Thu Sep 15 14:53:55 2005 UTC (14 years, 2 months ago) by bates
Adding CHOLMOD and related source packages

Revision 911 - Directory Listing
Modified Fri Sep 9 08:13:06 2005 UTC (14 years, 2 months ago) by maechler
date

Revision 910 - Directory Listing
Modified Fri Sep 9 08:12:58 2005 UTC (14 years, 2 months ago) by maechler
comments & update for Diagonal

Revision 909 - Directory Listing
Modified Fri Sep 9 08:12:31 2005 UTC (14 years, 2 months ago) by maechler
if(require(graph))  around everything

Revision 908 - Directory Listing
Modified Thu Sep 8 15:30:08 2005 UTC (14 years, 2 months ago) by maechler
cbind() / cbind2() methods for R >= 2.2.0

Revision 907 - Directory Listing
Modified Thu Sep 8 15:28:48 2005 UTC (14 years, 2 months ago) by maechler
move testing "tools" functions to ./inst/test-tools.R

Revision 906 - Directory Listing
Modified Thu Sep 8 15:26:45 2005 UTC (14 years, 2 months ago) by maechler
new file testing cbind() - cbind2() dispatch

Revision 905 - Directory Listing
Modified Thu Sep 8 13:23:25 2005 UTC (14 years, 2 months ago) by maechler
centralize the testing tools

Revision 904 - Directory Listing
Modified Wed Sep 7 20:43:59 2005 UTC (14 years, 2 months ago) by bates
Fix readHB according to bug report from Roger Koenker

Revision 903 - Directory Listing
Modified Wed Sep 7 20:43:18 2005 UTC (14 years, 2 months ago) by bates
Remove unnecessary declaration

Revision 902 - Directory Listing
Modified Tue Sep 6 14:07:10 2005 UTC (14 years, 2 months ago) by bates


Revision 901 - Directory Listing
Modified Tue Sep 6 01:26:11 2005 UTC (14 years, 2 months ago) by bates
Add "start" argument to lmer

Revision 900 - Directory Listing
Modified Sat Sep 3 22:00:07 2005 UTC (14 years, 2 months ago) by maechler
up "Version" (for those using svn version)

Revision 899 - Directory Listing
Modified Sat Sep 3 21:59:29 2005 UTC (14 years, 2 months ago) by maechler
(finally) check validity of all Matrix subclasses

Revision 898 - Directory Listing
Modified Sat Sep 3 21:58:37 2005 UTC (14 years, 2 months ago) by maechler
+ prototypes for validity; pMatrix validity

Revision 897 - Directory Listing
Modified Sat Sep 3 21:57:55 2005 UTC (14 years, 2 months ago) by maechler
cosmetic: stay within integers

Revision 896 - Directory Listing
Modified Sat Sep 3 21:57:18 2005 UTC (14 years, 2 months ago) by maechler
more consistency in validation checks

Revision 895 - Directory Listing
Modified Sat Sep 3 21:56:35 2005 UTC (14 years, 2 months ago) by maechler
cosmetic, comment

Revision 894 - Directory Listing
Modified Sat Sep 3 21:55:38 2005 UTC (14 years, 2 months ago) by maechler
comments

Revision 893 - Directory Listing
Modified Sat Sep 3 21:54:10 2005 UTC (14 years, 2 months ago) by maechler
workaround Rdconv and Slot-section-parsing buglets

Revision 892 - Directory Listing
Modified Fri Sep 2 13:40:47 2005 UTC (14 years, 2 months ago) by maechler
move some methods from lgT to lsparse

Revision 891 - Directory Listing
Modified Fri Sep 2 13:39:57 2005 UTC (14 years, 2 months ago) by maechler
new symmetric* and triangular* classes` docu: link to them in other places

Revision 890 - Directory Listing
Modified Thu Sep 1 17:18:08 2005 UTC (14 years, 2 months ago) by maechler
add triangularMatrix_validate and symmetric* to C code and make (re!)use of it - not quite everywhere?

Revision 889 - Directory Listing
Modified Thu Sep 1 14:19:01 2005 UTC (14 years, 2 months ago) by bates
Typo

Revision 888 - Directory Listing
Modified Thu Sep 1 13:46:21 2005 UTC (14 years, 2 months ago) by bates
New simulate method for lmer objects

Revision 887 - Directory Listing
Modified Wed Aug 31 20:31:47 2005 UTC (14 years, 2 months ago) by maechler
uplo &diag slots now go with superclass triangular* or symmetric*

Revision 886 - Directory Listing
Modified Wed Aug 31 17:49:47 2005 UTC (14 years, 2 months ago) by maechler
new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and character indices; new tests; more to do

Revision 885 - Directory Listing
Modified Tue Aug 30 20:54:55 2005 UTC (14 years, 2 months ago) by maechler
fix typo in non-validity text

Revision 884 - Directory Listing
Modified Tue Aug 30 14:38:31 2005 UTC (14 years, 2 months ago) by bates
Update

Revision 883 - Directory Listing
Modified Tue Aug 30 14:38:04 2005 UTC (14 years, 2 months ago) by bates
Doxygen documentation for C function

Revision 882 - Directory Listing
Modified Tue Aug 30 14:37:24 2005 UTC (14 years, 2 months ago) by bates
Corrected a typo

Revision 881 - Directory Listing
Modified Tue Aug 30 14:37:09 2005 UTC (14 years, 2 months ago) by bates


Revision 880 - Directory Listing
Modified Tue Aug 30 14:36:41 2005 UTC (14 years, 2 months ago) by bates
More coercion methods

Revision 879 - Directory Listing
Modified Tue Aug 30 14:35:05 2005 UTC (14 years, 2 months ago) by bates
Added simulate generic and method

Revision 878 - Directory Listing
Modified Sun Aug 28 13:57:39 2005 UTC (14 years, 2 months ago) by bates
Add simulate method for lmer

Revision 877 - Directory Listing
Modified Sun Aug 28 13:57:12 2005 UTC (14 years, 2 months ago) by bates
Correct class names

Revision 876 - Directory Listing
Modified Sat Aug 27 22:50:57 2005 UTC (14 years, 2 months ago) by bates
clean up conversion of graphNEL to sparseMatrix

Revision 875 - Directory Listing
Modified Sat Aug 27 21:29:21 2005 UTC (14 years, 2 months ago) by maechler
indexing (mainly denseMatrix) - using "vector" indices

Revision 874 - Directory Listing
Modified Sat Aug 27 21:27:51 2005 UTC (14 years, 2 months ago) by maechler
prepare graphNEL coercion both for directed and undir.

Revision 873 - Directory Listing
Modified Sat Aug 27 21:26:23 2005 UTC (14 years, 2 months ago) by maechler
some new ones

Revision 872 - Directory Listing
Modified Sat Aug 27 21:26:10 2005 UTC (14 years, 2 months ago) by maechler
new for regr.checking

Revision 871 - Directory Listing
Modified Fri Aug 26 17:26:49 2005 UTC (14 years, 2 months ago) by maechler
Version 0.98-6: "[" methods for dense matrices; first "[<-"; examples

Revision 870 - Directory Listing
Modified Fri Aug 26 17:25:03 2005 UTC (14 years, 2 months ago) by maechler
"Summary" method -> found R-bug

Revision 869 - Directory Listing
Modified Fri Aug 26 17:23:49 2005 UTC (14 years, 2 months ago) by maechler
better explain diag="U" for dtpMatrix

Revision 868 - Directory Listing
Modified Fri Aug 19 17:01:11 2005 UTC (14 years, 3 months ago) by maechler
printing of sparse logicals; "[" reorganization (part 1)

Revision 867 - Directory Listing
Modified Fri Aug 19 16:59:46 2005 UTC (14 years, 3 months ago) by maechler
new "gTMatrix" virtual class

Revision 866 - Directory Listing
Modified Fri Aug 19 16:58:26 2005 UTC (14 years, 3 months ago) by maechler
new lcrc_to_matrix code

Revision 865 - Directory Listing
Modified Fri Aug 19 16:57:49 2005 UTC (14 years, 3 months ago) by maechler
setAs( to "lgTMatrix" )

Revision 864 - Directory Listing
Modified Thu Aug 18 21:36:49 2005 UTC (14 years, 3 months ago) by bates
It's 'warning', not 'warn'

Revision 863 - Directory Listing
Modified Thu Aug 18 21:31:31 2005 UTC (14 years, 3 months ago) by bates
Release 0.98-5

Revision 862 - Directory Listing
Modified Thu Aug 18 21:31:07 2005 UTC (14 years, 3 months ago) by bates
Coercion method for graphNEL to sparseMatrix class

Revision 861 - Directory Listing
Modified Thu Aug 18 21:29:52 2005 UTC (14 years, 3 months ago) by bates
Fix column labels on mcmcsamp for glmer objects

Revision 860 - Directory Listing
Modified Wed Aug 17 05:50:50 2005 UTC (14 years, 3 months ago) by maechler
Version

Revision 859 - Directory Listing
Modified Wed Aug 17 05:37:55 2005 UTC (14 years, 3 months ago) by maechler
add sparse logical matrices

Revision 858 - Directory Listing
Modified Wed Aug 17 05:37:27 2005 UTC (14 years, 3 months ago) by maechler
line wrap; + example

Revision 857 - Directory Listing
Modified Tue Aug 16 22:19:58 2005 UTC (14 years, 3 months ago) by bates
Change method of reading Harwell-Boeing matrix format and change example

Revision 856 - Directory Listing
Modified Tue Aug 16 20:20:13 2005 UTC (14 years, 3 months ago) by maechler
small fixups

Revision 855 - Directory Listing
Modified Tue Aug 16 18:57:36 2005 UTC (14 years, 3 months ago) by maechler
first place to use callNextMethod()

Revision 854 - Directory Listing
Modified Tue Aug 16 18:05:01 2005 UTC (14 years, 3 months ago) by bates
Release 0.98-4

Revision 853 - Directory Listing
Modified Tue Aug 16 18:03:01 2005 UTC (14 years, 3 months ago) by bates
Move documentation for readHB and readMM to man/externalFormats.Rd

Revision 852 - Directory Listing
Modified Tue Aug 16 17:52:16 2005 UTC (14 years, 3 months ago) by bates
Move readHB and readMM to R code and allow the use of connections

Revision 851 - Directory Listing
Modified Tue Aug 16 17:39:38 2005 UTC (14 years, 3 months ago) by maechler
export  dgR*, dsR* & dtR* Matrix - and "fix" stubs

Revision 850 - Directory Listing
Modified Tue Aug 16 17:38:04 2005 UTC (14 years, 3 months ago) by maechler
+ "denseMatrix"

Revision 849 - Directory Listing
Modified Tue Aug 16 17:37:09 2005 UTC (14 years, 3 months ago) by maechler
mv \title

Revision 848 - Directory Listing
Modified Thu Aug 11 07:41:59 2005 UTC (14 years, 3 months ago) by maechler
+"denseMatrix" class; export defined but unused classes

Revision 847 - Directory Listing
Modified Thu Aug 11 06:44:09 2005 UTC (14 years, 3 months ago) by bates
Release 0.98-3

Revision 846 - Directory Listing
Modified Wed Aug 10 22:08:35 2005 UTC (14 years, 3 months ago) by bates
Release 0.98-3

Revision 845 - Directory Listing
Modified Wed Aug 10 18:26:18 2005 UTC (14 years, 3 months ago) by maechler
add "FIXME" example

Revision 844 - Directory Listing
Modified Wed Aug 10 18:25:32 2005 UTC (14 years, 3 months ago) by maechler
kappa(Matrix()) no longer segfaults

Revision 843 - Directory Listing
Modified Wed Aug 10 18:24:18 2005 UTC (14 years, 3 months ago) by maechler
comment

Revision 842 - Directory Listing
Modified Tue Aug 9 14:23:37 2005 UTC (14 years, 3 months ago) by bates
Modify column names for transformed parameters in mcmcsamp

Revision 841 - Directory Listing
Modified Tue Aug 9 14:21:32 2005 UTC (14 years, 3 months ago) by bates
Remove second declaration of IOHBterminate

Revision 840 - Directory Listing
Modified Mon Aug 8 16:16:17 2005 UTC (14 years, 3 months ago) by bates
Avoid problems with trying to write to string constants.

Revision 839 - Directory Listing
Modified Mon Aug 8 14:59:54 2005 UTC (14 years, 3 months ago) by bates
update

Revision 838 - Directory Listing
Modified Mon Aug 8 14:59:38 2005 UTC (14 years, 3 months ago) by bates
writeHarwellBoeing and writeMatrixMarket routines

Revision 837 - Directory Listing
Modified Mon Aug 8 14:58:55 2005 UTC (14 years, 3 months ago) by bates
Simplify plots of examples in mcmcsamp by making them 1000 points only

Revision 836 - Directory Listing
Modified Mon Aug 8 13:37:04 2005 UTC (14 years, 3 months ago) by maechler
added {tolerance} [was not saved at last "commit"]

Revision 835 - Directory Listing
Modified Mon Aug 8 13:33:18 2005 UTC (14 years, 3 months ago) by bates
Add writeHB and writeMM methods and generic

Revision 834 - Directory Listing
Modified Mon Aug 8 08:36:34 2005 UTC (14 years, 3 months ago) by maechler
misc comments/formatting

Revision 833 - Directory Listing
Modified Mon Aug 8 08:35:17 2005 UTC (14 years, 3 months ago) by maechler
fixing to unused Lower/Upper Triangular test functions

Revision 832 - Directory Listing
Modified Mon Aug 8 08:33:55 2005 UTC (14 years, 3 months ago) by maechler
lmer()`s "model = T/F" and control arguments; add comments and "FIXME"s

Revision 831 - Directory Listing
Modified Mon Aug 8 08:24:10 2005 UTC (14 years, 3 months ago) by maechler
note on setGeneric("lmer",*) - match.call() pecularity

Revision 830 - Directory Listing
Modified Mon Aug 8 08:22:44 2005 UTC (14 years, 3 months ago) by maechler
add examples + FIXME note

Revision 829 - Directory Listing
Modified Mon Aug 8 08:21:47 2005 UTC (14 years, 3 months ago) by maechler
re-assign as.matrix() in base (!) -- experimental

Revision 828 - Directory Listing
Modified Sun Aug 7 21:59:32 2005 UTC (14 years, 3 months ago) by bates
Remove OrchardSprays examples

Revision 827 - Directory Listing
Modified Sun Aug 7 21:58:53 2005 UTC (14 years, 3 months ago) by bates
More examples

Revision 826 - Directory Listing
Modified Sun Aug 7 16:28:57 2005 UTC (14 years, 3 months ago) by bates
add examples of external formats

Revision 825 - Directory Listing
Modified Sun Aug 7 15:22:33 2005 UTC (14 years, 3 months ago) by bates
Harwell-Boeing and MatrixMarket formats

Revision 824 - Directory Listing
Modified Sat Aug 6 20:01:51 2005 UTC (14 years, 3 months ago) by bates
Allow mcmcsamp on transformed parameters

Revision 823 - Directory Listing
Modified Sat Jul 30 21:35:38 2005 UTC (14 years, 3 months ago) by maechler
+ tcrossprod() method for simple "matrix" and "numeric"

Revision 822 - Directory Listing
Modified Sat Jul 30 21:34:15 2005 UTC (14 years, 3 months ago) by maechler
get rid of \synopsis{} and document missing args

Revision 820 - Directory Listing
Modified Wed Jul 27 23:07:04 2005 UTC (14 years, 3 months ago) by bates
Version 0.98-1

Revision 818 - Directory Listing
Modified Tue Jul 26 22:46:14 2005 UTC (14 years, 3 months ago) by bates
updates on lmer_MCMCsamp

Revision 816 - Directory Listing
Modified Tue Jul 26 12:36:10 2005 UTC (14 years, 4 months ago) by bates
Working version of lmer_MCMCsamp - may have chisq in wrong place when sampling sigmasqr

Revision 815 - Directory Listing
Modified Sun Jul 24 23:53:40 2005 UTC (14 years, 4 months ago) by bates
Added lmer_MCMCsamp to the C sources

Revision 814 - Directory Listing
Modified Thu Jul 21 23:05:52 2005 UTC (14 years, 4 months ago) by bates
Working version of the glmmMCMC producing an mcmc object

Revision 813 - Directory Listing
Modified Thu Jul 21 16:41:42 2005 UTC (14 years, 4 months ago) by bates
New sampling for glmerMCMC but intermediates are not appropriately PROTECTed

Revision 812 - Directory Listing
Modified Thu Jul 21 14:59:04 2005 UTC (14 years, 4 months ago) by bates
Added an rWishart function, which should later be moved to the stats package

Revision 811 - Directory Listing
Modified Thu Jul 14 15:37:41 2005 UTC (14 years, 4 months ago) by bates
Modifications to glmmMCMC

Revision 810 - Directory Listing
Modified Thu Jul 14 13:48:38 2005 UTC (14 years, 4 months ago) by bates
Modifications to glmmMCMC

Revision 809 - Directory Listing
Modified Tue Jul 12 23:00:50 2005 UTC (14 years, 4 months ago) by bates
Release 0.97-4 with fix suggested by DTL

Revision 808 - Directory Listing
Modified Mon Jul 11 15:05:40 2005 UTC (14 years, 4 months ago) by bates
Release 0.97-3

Revision 807 - Directory Listing
Modified Mon Jul 11 14:51:22 2005 UTC (14 years, 4 months ago) by bates
Release 0.97-3

Revision 806 - Directory Listing
Modified Fri Jul 8 15:38:43 2005 UTC (14 years, 4 months ago) by bates
Preliminary version of glmmMCMC

Revision 805 - Directory Listing
Modified Fri Jul 8 03:47:35 2005 UTC (14 years, 4 months ago) by bates
More work on glmer_ranef_update - still not complete

Revision 804 - Directory Listing
Modified Thu Jul 7 20:05:47 2005 UTC (14 years, 4 months ago) by bates
Preparing for glmmMCMC

Revision 803 - Directory Listing
Modified Thu Jul 7 19:09:49 2005 UTC (14 years, 4 months ago) by murdoch
Get include files from R_HOME/include in Windows

Revision 802 - Directory Listing
Modified Wed Jul 6 23:55:39 2005 UTC (14 years, 4 months ago) by bates
got glmer_fixed_update working

Revision 801 - Directory Listing
Modified Wed Jul 6 16:24:33 2005 UTC (14 years, 4 months ago) by bates
Updates for release 0.97-2

Revision 800 - Directory Listing
Modified Tue Jul 5 00:38:09 2005 UTC (14 years, 4 months ago) by bates
Clean up

Revision 799 - Directory Listing
Modified Tue Jul 5 00:37:34 2005 UTC (14 years, 4 months ago) by bates
Increase default maxIter and calculate nAGQ more carefully

Revision 798 - Directory Listing
Modified Mon Jul 4 15:28:48 2005 UTC (14 years, 4 months ago) by bates
Updates to man pages

Revision 797 - Directory Listing
Modified Mon Jul 4 15:28:22 2005 UTC (14 years, 4 months ago) by bates
Need to print results of tests in a conditional expression

Revision 796 - Directory Listing
Modified Mon Jul 4 14:57:28 2005 UTC (14 years, 4 months ago) by bates
Added utilities vecSum and vecIncrement

Revision 795 - Directory Listing
Modified Mon Jul 4 14:56:57 2005 UTC (14 years, 4 months ago) by bates
Added AGQ for glmer class

Revision 794 - Directory Listing
Modified Mon Jul 4 14:54:33 2005 UTC (14 years, 4 months ago) by bates
New release

Revision 793 - Directory Listing
Modified Mon Jul 4 14:54:13 2005 UTC (14 years, 4 months ago) by bates
Added tests for generalized mixed models

Revision 792 - Directory Listing
Modified Sat Jul 2 20:58:14 2005 UTC (14 years, 4 months ago) by maechler
cosmetic

Revision 791 - Directory Listing
Modified Sat Jul 2 20:57:32 2005 UTC (14 years, 4 months ago) by maechler
at least 1 entry for Doug

Revision 790 - Directory Listing
Modified Sat Jul 2 20:57:08 2005 UTC (14 years, 4 months ago) by maechler
emacs-helping comment

Revision 789 - Directory Listing
Modified Sat Jul 2 20:55:50 2005 UTC (14 years, 4 months ago) by maechler
separate docu for ddenseMatrix class

Revision 788 - Directory Listing
Modified Fri Jul 1 10:19:36 2005 UTC (14 years, 4 months ago) by maechler
add concept for GLMM

Revision 787 - Directory Listing
Modified Thu Jun 30 16:59:12 2005 UTC (14 years, 4 months ago) by bates
Still modifying glmer_devAGQ

Revision 786 - Directory Listing
Modified Tue Jun 28 13:58:41 2005 UTC (14 years, 4 months ago) by bates
Developing AGQ but still not right

Revision 785 - Directory Listing
Modified Sun Jun 26 16:22:56 2005 UTC (14 years, 4 months ago) by bates
Conditional modes now ok for MCMC - still need sampling methods

Revision 784 - Directory Listing
Modified Sun Jun 26 03:42:21 2005 UTC (14 years, 5 months ago) by bates
More work on MCMC (still incomplete)

Revision 783 - Directory Listing
Modified Sun Jun 26 03:41:37 2005 UTC (14 years, 5 months ago) by bates
Reinstate check on number of arguments

Revision 782 - Directory Listing
Modified Fri Jun 24 23:06:33 2005 UTC (14 years, 5 months ago) by bates
Adding MCMC capability (currently incomplete)

Revision 781 - Directory Listing
Modified Fri Jun 24 15:38:43 2005 UTC (14 years, 5 months ago) by bates
Further development on AGQ and MCMC for glmm models

Revision 780 - Directory Listing
Modified Sun Jun 19 14:59:30 2005 UTC (14 years, 5 months ago) by bates
Release 0.96-3

Revision 779 - Directory Listing
Modified Wed Jun 15 15:52:19 2005 UTC (14 years, 5 months ago) by bates
Adding AGQ (but not yet correct)

Revision 778 - Directory Listing
Modified Tue Jun 14 04:05:54 2005 UTC (14 years, 5 months ago) by bates
Non-working version - needs adjustment of deviance by multiplicative factor

Revision 777 - Directory Listing
Modified Tue Jun 14 04:02:57 2005 UTC (14 years, 5 months ago) by bates
release 0.96-2

Revision 776 - Directory Listing
Modified Mon Jun 13 19:45:04 2005 UTC (14 years, 5 months ago) by bates
Setting up for AGQ

Revision 775 - Directory Listing
Modified Mon Jun 13 01:22:28 2005 UTC (14 years, 5 months ago) by bates
Factoring C code in preparation for AGQ

Revision 774 - Directory Listing
Modified Fri Jun 10 18:40:54 2005 UTC (14 years, 5 months ago) by bates
Moving devLaplace calculations to C code

Revision 773 - Directory Listing
Modified Thu Jun 9 18:30:33 2005 UTC (14 years, 5 months ago) by bates
Adding flag to skip fixed-effects terms (for use with generalized linear or nonlinear models)

Revision 772 - Directory Listing
Modified Thu Jun 9 16:57:55 2005 UTC (14 years, 5 months ago) by bates
Prepare for release 0.96-1

Revision 769 - Directory Listing
Modified Wed Jun 8 23:47:45 2005 UTC (14 years, 5 months ago) by bates
Moving lmer to the Matrix package

Revision 768 - Directory Listing
Modified Wed Jun 8 17:19:21 2005 UTC (14 years, 5 months ago) by maechler
re-instantiate old examples / tests since R-devel bug seems gone now

Revision 766 - Directory Listing
Modified Tue Jun 7 23:03:34 2005 UTC (14 years, 5 months ago) by bates
Isolating and cleaning up the mer, lmer, and glmer functions

Revision 765 - Directory Listing
Modified Tue Jun 7 23:03:19 2005 UTC (14 years, 5 months ago) by bates
Keep -Wall quiet

Revision 764 - Directory Listing
Modified Mon Jun 6 16:03:07 2005 UTC (14 years, 5 months ago) by bates
Keep -Wall quiet

Revision 763 - Directory Listing
Modified Mon Jun 6 15:53:08 2005 UTC (14 years, 5 months ago) by bates
New release

Revision 762 - Directory Listing
Modified Mon Jun 6 15:52:23 2005 UTC (14 years, 5 months ago) by bates
Keep -Wall quiet

Revision 761 - Directory Listing
Modified Mon Jun 6 15:51:24 2005 UTC (14 years, 5 months ago) by bates
Use mer objects; Replace REML slot by method slot

Revision 760 - Directory Listing
Modified Mon Jun 6 15:48:13 2005 UTC (14 years, 5 months ago) by bates
Fix matrix multiplication methods

Revision 759 - Directory Listing
Modified Mon Jun 6 15:47:13 2005 UTC (14 years, 5 months ago) by bates
Fix matrix multiplication methods

Revision 758 - Directory Listing
Modified Mon Jun 6 15:46:28 2005 UTC (14 years, 5 months ago) by bates
Fix matrix multiplication methods

Revision 757 - Directory Listing
Modified Mon Jun 6 15:39:04 2005 UTC (14 years, 5 months ago) by bates
Comment out problematic tests

Revision 756 - Directory Listing
Modified Mon Jun 6 15:38:50 2005 UTC (14 years, 5 months ago) by bates
Comment out problematic tests

Revision 753 - Directory Listing
Modified Sun May 29 02:15:35 2005 UTC (14 years, 5 months ago) by bates
Release 0.95-11

Revision 749 - Directory Listing
Modified Fri May 20 03:17:14 2005 UTC (14 years, 6 months ago) by bates
Release 0.95-10

Revision 748 - Directory Listing
Modified Thu May 19 21:29:33 2005 UTC (14 years, 6 months ago) by deepayan
fixed typos

Revision 747 - Directory Listing
Modified Thu May 19 17:43:42 2005 UTC (14 years, 6 months ago) by bates
Incorrect version but I want to transfer it

Revision 746 - Directory Listing
Modified Wed May 18 17:03:17 2005 UTC (14 years, 6 months ago) by bates
Corrected determination of slot sizes for multiple non-nested grouping factors

Revision 745 - Directory Listing
Modified Tue May 17 18:34:27 2005 UTC (14 years, 6 months ago) by bates
Fold bCrosstab.[ch] into lmer.[ch]

Revision 744 - Directory Listing
Modified Tue May 17 17:46:19 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 743 - Directory Listing
Modified Tue May 17 17:45:52 2005 UTC (14 years, 6 months ago) by bates
Fold bCrosstab.[ch] into lmer.[ch]

Revision 742 - Directory Listing
Modified Tue May 17 17:45:24 2005 UTC (14 years, 6 months ago) by bates
Fold bCrosstab.[ch] into lmer.[ch]

Revision 741 - Directory Listing
Modified Tue May 17 17:44:02 2005 UTC (14 years, 6 months ago) by bates
collapse some constructions in the code

Revision 740 - Directory Listing
Modified Tue May 17 17:42:35 2005 UTC (14 years, 6 months ago) by bates
Last update before removing these files

Revision 739 - Directory Listing
Modified Tue May 17 17:42:04 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 738 - Directory Listing
Modified Tue May 17 17:25:31 2005 UTC (14 years, 6 months ago) by bates
Added Matrix_expand_pointers (callable from R) and moved utility for duplicating slots

Revision 737 - Directory Listing
Modified Tue May 17 17:21:38 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 736 - Directory Listing
Modified Tue May 17 17:21:04 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 735 - Directory Listing
Modified Tue May 17 17:20:01 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 734 - Directory Listing
Modified Tue May 17 17:18:54 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 733 - Directory Listing
Modified Tue May 17 17:18:30 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 732 - Directory Listing
Modified Tue May 17 17:18:14 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 731 - Directory Listing
Modified Tue May 17 17:17:29 2005 UTC (14 years, 6 months ago) by bates
Cosmetic changes

Revision 730 - Directory Listing
Modified Tue May 17 17:16:53 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 729 - Directory Listing
Modified Tue May 17 17:16:39 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 728 - Directory Listing
Modified Sat May 14 00:21:17 2005 UTC (14 years, 6 months ago) by bates
Preparing for release 0.95-10

Revision 726 - Directory Listing
Modified Thu May 12 14:59:04 2005 UTC (14 years, 6 months ago) by bates
Release 0.95-9

Revision 725 - Directory Listing
Modified Tue May 10 14:50:39 2005 UTC (14 years, 6 months ago) by bates
Release 0.95-8 with bug fix for sparse symmetric solve

Revision 723 - Directory Listing
Modified Tue May 10 01:42:05 2005 UTC (14 years, 6 months ago) by bates
More logical sparse matrix methods

Revision 722 - Directory Listing
Modified Mon May 9 14:29:12 2005 UTC (14 years, 6 months ago) by bates


Revision 720 - Directory Listing
Modified Mon May 9 01:32:44 2005 UTC (14 years, 6 months ago) by bates
Methods for logical general sparse matrices

Revision 718 - Directory Listing
Modified Mon May 9 01:24:35 2005 UTC (14 years, 6 months ago) by bates
Getting ready for a release

Revision 715 - Directory Listing
Modified Fri May 6 23:52:53 2005 UTC (14 years, 6 months ago) by bates
Added colSums and friends for dgeMatrix class

Revision 714 - Directory Listing
Modified Fri May 6 23:52:34 2005 UTC (14 years, 6 months ago) by bates
Added colSums and friends for dgeMatrix class

Revision 712 - Directory Listing
Modified Fri May 6 22:20:59 2005 UTC (14 years, 6 months ago) by bates


Revision 711 - Directory Listing
Modified Thu May 5 04:12:44 2005 UTC (14 years, 6 months ago) by deepayan
Updates related to Laplace approximation

Revision 709 - Directory Listing
Modified Tue May 3 16:08:26 2005 UTC (14 years, 6 months ago) by deepayan
changes related to Laplace approximation, including new function to compute parts of the deviance in C code, which doesn't currently work

Revision 705 - Directory Listing
Modified Fri Apr 29 14:42:39 2005 UTC (14 years, 6 months ago) by deepayan
additions related to the Laplace approximation in glmm lmer models

Revision 703 - Directory Listing
Modified Thu Apr 21 22:00:04 2005 UTC (14 years, 7 months ago) by bates
Replace identical(TRUE, ...) by isTRUE(...)

Revision 702 - Directory Listing
Modified Thu Apr 21 13:00:36 2005 UTC (14 years, 7 months ago) by bates
Moving Doxyfile

Revision 701 - Directory Listing
Modified Wed Apr 20 13:24:21 2005 UTC (14 years, 7 months ago) by bates
Finally remove Nineteen_Dubious_Revisited from svn archive

Revision 700 - Directory Listing
Modified Mon Apr 18 20:21:04 2005 UTC (14 years, 7 months ago) by maechler
-Wall

Revision 699 - Directory Listing
Modified Mon Apr 18 20:20:46 2005 UTC (14 years, 7 months ago) by maechler
comment out "integer" methods: those are now part of "numeric"

Revision 698 - Directory Listing
Modified Mon Apr 18 20:20:04 2005 UTC (14 years, 7 months ago) by maechler
numeric x dgeMatrix : for solve etc; semi-activate the as.Matrix() idea

Revision 697 - Directory Listing
Modified Mon Apr 18 20:18:46 2005 UTC (14 years, 7 months ago) by maechler
numeric x dgeMatrix : for solve etc

Revision 696 - Directory Listing
Modified Mon Apr 18 20:03:58 2005 UTC (14 years, 7 months ago) by maechler
sparse "scalar" arithmetic

Revision 695 - Directory Listing
Modified Mon Apr 18 17:12:14 2005 UTC (14 years, 7 months ago) by bates
Tests for the solve methods

Revision 694 - Directory Listing
Modified Mon Apr 18 17:11:32 2005 UTC (14 years, 7 months ago) by bates
Give a warning, not an error, for detection of exact singularity in the LU decomposition

Revision 693 - Directory Listing
Modified Mon Apr 18 17:02:26 2005 UTC (14 years, 7 months ago) by bates
In R-2.1.0 matrix dispatches before integer so always set storage.mode on objects of class "matrix"

Revision 692 - Directory Listing
Modified Mon Apr 18 14:34:33 2005 UTC (14 years, 7 months ago) by bates
Release 0.95-6

Revision 688 - Directory Listing
Modified Sat Apr 2 13:18:16 2005 UTC (14 years, 7 months ago) by maechler
no need for \ in %*% in error message

Revision 687 - Directory Listing
Modified Fri Apr 1 07:36:09 2005 UTC (14 years, 7 months ago) by maechler
"[" and show() methods for sparse matrices => RFC

Revision 686 - Directory Listing
Modified Thu Mar 31 21:19:35 2005 UTC (14 years, 7 months ago) by bates
Create "fallback" methods for any kind of numeric, dense matrix

Revision 685 - Directory Listing
Modified Thu Mar 31 18:17:28 2005 UTC (14 years, 7 months ago) by bates
Multiplication operations for sparseMatrix and ddenseMatrix

Revision 684 - Directory Listing
Modified Thu Mar 31 17:56:46 2005 UTC (14 years, 7 months ago) by bates
Multiplication operations for sparseMatrix and ddenseMatrix

Revision 683 - Directory Listing
Modified Thu Mar 31 17:10:16 2005 UTC (14 years, 7 months ago) by bates
Moving methods for operations with numeric to the Matrix class and with integer to the dMatrix class

Revision 682 - Directory Listing
Modified Thu Mar 31 08:07:02 2005 UTC (14 years, 7 months ago) by maechler
commit the TRUE case (all.equal difference)

Revision 681 - Directory Listing
Modified Thu Mar 31 00:14:36 2005 UTC (14 years, 7 months ago) by bates
Repaired a thinko in the lmer_fitted function

Revision 680 - Directory Listing
Modified Wed Mar 30 14:43:56 2005 UTC (14 years, 7 months ago) by bates
Prepare for release 0.95-4

Revision 679 - Directory Listing
Modified Wed Mar 30 14:42:36 2005 UTC (14 years, 7 months ago) by bates
Rename expand_column_pointers to expand_cmpPt (expand compressed pointers)

Revision 678 - Directory Listing
Modified Wed Mar 30 14:27:40 2005 UTC (14 years, 7 months ago) by bates
Misread instructions - directory not used

Revision 677 - Directory Listing
Modified Mon Mar 28 14:03:32 2005 UTC (14 years, 7 months ago) by bates
Added dgRMatrix methods and documentation

Revision 676 - Directory Listing
Modified Sat Mar 26 15:59:18 2005 UTC (14 years, 8 months ago) by maechler
+ virtual "sparseMatrix" classes

Revision 675 - Directory Listing
Modified Sat Mar 26 11:16:05 2005 UTC (14 years, 8 months ago) by maechler
export csc_tcrossprod - and add examples & test for tcrossprod()

Revision 666 - Directory Listing
Modified Thu Mar 24 13:50:16 2005 UTC (14 years, 8 months ago) by bates
Add replace functions to calls to setIs for symmetric to positive definite

Revision 665 - Directory Listing
Modified Thu Mar 24 13:06:09 2005 UTC (14 years, 8 months ago) by bates
Removing the ssclme and sscCrosstab classes

Revision 664 - Directory Listing
Modified Thu Mar 24 13:00:09 2005 UTC (14 years, 8 months ago) by maechler
make virtual classes "VIRTUAL"

Revision 663 - Directory Listing
Modified Wed Mar 23 17:36:48 2005 UTC (14 years, 8 months ago) by bates
Moving all ssclme-related R code to the lme4 package

Revision 662 - Directory Listing
Modified Wed Mar 23 17:34:59 2005 UTC (14 years, 8 months ago) by bates
Moving all ssclme-related R code to the lme4 package

Revision 661 - Directory Listing
Modified Tue Mar 22 21:02:01 2005 UTC (14 years, 8 months ago) by maechler
add "obvious" new matrices

Revision 660 - Directory Listing
Modified Thu Mar 17 17:53:43 2005 UTC (14 years, 8 months ago) by maechler
minor changes; less precision for platform portability

Revision 659 - Directory Listing
Modified Thu Mar 17 17:53:10 2005 UTC (14 years, 8 months ago) by maechler
cosmetic; examples

Revision 658 - Directory Listing
Modified Thu Mar 17 17:52:06 2005 UTC (14 years, 8 months ago) by maechler
+ as.matrix() + unname() method

Revision 657 - Directory Listing
Modified Wed Mar 16 16:57:52 2005 UTC (14 years, 8 months ago) by maechler
more %*% and setAs(); tests too

Revision 656 - Directory Listing
Modified Wed Mar 16 16:55:32 2005 UTC (14 years, 8 months ago) by maechler
rename s/M.n/M.v/ etc

Revision 655 - Directory Listing
Modified Wed Mar 16 16:37:05 2005 UTC (14 years, 8 months ago) by maechler
eliminate extraneous declaration for "-Wall"

Revision 654 - Directory Listing
Modified Wed Mar 16 16:18:33 2005 UTC (14 years, 8 months ago) by bates
Generalize matrix multiplication and solve methods

Revision 653 - Directory Listing
Modified Wed Mar 16 16:17:43 2005 UTC (14 years, 8 months ago) by bates
include permutation in expand method for LU

Revision 652 - Directory Listing
Modified Wed Mar 16 01:08:36 2005 UTC (14 years, 8 months ago) by bates
Updates to multiplication and other methods

Revision 651 - Directory Listing
Modified Tue Mar 15 01:54:50 2005 UTC (14 years, 8 months ago) by bates
Document methods and add links

Revision 650 - Directory Listing
Modified Tue Mar 15 01:53:58 2005 UTC (14 years, 8 months ago) by bates
Correct the coercion to matrix

Revision 649 - Directory Listing
Modified Tue Mar 15 00:59:38 2005 UTC (14 years, 8 months ago) by bates
Validate function stubs for pBunchKaufman and pCholesky classes

Revision 648 - Directory Listing
Modified Tue Mar 15 00:58:37 2005 UTC (14 years, 8 months ago) by bates
Zero the unused triangle in the Cholesky decomposition

Revision 647 - Directory Listing
Modified Tue Mar 15 00:56:35 2005 UTC (14 years, 8 months ago) by bates
Document methods for dppMatrix class

Revision 646 - Directory Listing
Modified Tue Mar 15 00:52:35 2005 UTC (14 years, 8 months ago) by bates
'unpack' methods

Revision 645 - Directory Listing
Modified Tue Mar 15 00:51:42 2005 UTC (14 years, 8 months ago) by bates
Updates

Revision 644 - Directory Listing
Modified Tue Mar 15 00:51:16 2005 UTC (14 years, 8 months ago) by bates
Update test results

Revision 643 - Directory Listing
Modified Tue Mar 15 00:50:48 2005 UTC (14 years, 8 months ago) by bates
Adding many methods for the dsyMatrix class

Revision 642 - Directory Listing
Modified Tue Mar 15 00:49:32 2005 UTC (14 years, 8 months ago) by bates
'unpack' methods

Revision 641 - Directory Listing
Modified Tue Mar 15 00:48:34 2005 UTC (14 years, 8 months ago) by bates
Clean up the 't' method

Revision 640 - Directory Listing
Modified Tue Mar 15 00:44:13 2005 UTC (14 years, 8 months ago) by bates
permutation matrix class

Revision 639 - Directory Listing
Modified Tue Mar 15 00:44:02 2005 UTC (14 years, 8 months ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 638 - Directory Listing
Modified Tue Mar 15 00:43:21 2005 UTC (14 years, 8 months ago) by bates
permutation matrix class

Revision 637 - Directory Listing
Modified Tue Mar 15 00:41:24 2005 UTC (14 years, 8 months ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 636 - Directory Listing
Modified Tue Mar 15 00:40:58 2005 UTC (14 years, 8 months ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 635 - Directory Listing
Modified Tue Mar 15 00:40:26 2005 UTC (14 years, 8 months ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 634 - Directory Listing
Modified Sun Mar 13 21:01:45 2005 UTC (14 years, 8 months ago) by maechler
updates

Revision 633 - Directory Listing
Modified Sun Mar 13 21:01:15 2005 UTC (14 years, 8 months ago) by maechler
comments

Revision 632 - Directory Listing
Modified Sun Mar 13 21:00:53 2005 UTC (14 years, 8 months ago) by maechler
mv some to new Auxiliaries file (early in alphabetic sorting!)

Revision 631 - Directory Listing
Modified Sun Mar 13 04:34:52 2005 UTC (14 years, 8 months ago) by bates
Add BunchKaufman factorization

Revision 630 - Directory Listing
Modified Thu Mar 10 22:56:33 2005 UTC (14 years, 8 months ago) by maechler
update -- note this now fails for R 2.0.1

Revision 629 - Directory Listing
Modified Thu Mar 10 19:00:57 2005 UTC (14 years, 8 months ago) by bates
Fix dgeMatrix_dtpMatrix_mm and add test

Revision 628 - Directory Listing
Modified Thu Mar 10 17:57:47 2005 UTC (14 years, 8 months ago) by maechler
more  %*% methods; some dimnames in C (untested); checks extended

Revision 627 - Directory Listing
Modified Mon Mar 7 17:36:38 2005 UTC (14 years, 8 months ago) by maechler
oops! I believed the outdated docu -- it *IS* an S4 generic, really!

Revision 626 - Directory Listing
Modified Mon Mar 7 17:19:03 2005 UTC (14 years, 8 months ago) by maechler
cosmetic additions

Revision 622 - Directory Listing
Modified Mon Mar 7 12:45:59 2005 UTC (14 years, 8 months ago) by bates
Wrong number of args in lmer_update_mm

Revision 621 - Directory Listing
Modified Sat Mar 5 21:23:09 2005 UTC (14 years, 8 months ago) by maechler
mainly changed \alias{}es for methods

Revision 620 - Directory Listing
Modified Sat Mar 5 21:22:08 2005 UTC (14 years, 8 months ago) by maechler
new tests

Revision 619 - Directory Listing
Modified Sat Mar 5 21:21:31 2005 UTC (14 years, 8 months ago) by maechler
comments and cosmetic, setAs(.) first

Revision 618 - Directory Listing
Modified Sat Mar 5 21:20:42 2005 UTC (14 years, 8 months ago) by maechler
extended show Method, testing for "Matrix"; rather "ddenseMatrix" -> "matrix"

Revision 617 - Directory Listing
Modified Sat Mar 5 21:19:13 2005 UTC (14 years, 8 months ago) by maechler
+ setAs(*, "matrix")

Revision 616 - Directory Listing
Modified Sat Mar 5 21:17:40 2005 UTC (14 years, 8 months ago) by maechler
+ 2 crossprod methods

Revision 615 - Directory Listing
Modified Sat Mar 5 21:17:04 2005 UTC (14 years, 8 months ago) by maechler
L <-> U for transpose

Revision 614 - Directory Listing
Modified Sat Mar 5 21:14:43 2005 UTC (14 years, 8 months ago) by maechler
L <-> U for transpose

Revision 613 - Directory Listing
Modified Sat Mar 5 21:13:40 2005 UTC (14 years, 8 months ago) by maechler
+ Matrix_DimnamesSym

Revision 612 - Directory Listing
Modified Fri Mar 4 17:35:12 2005 UTC (14 years, 8 months ago) by maechler
update & extend tests

Revision 611 - Directory Listing
Modified Fri Mar 4 17:34:45 2005 UTC (14 years, 8 months ago) by maechler
\alias{.} for the new methods

Revision 610 - Directory Listing
Modified Fri Mar 4 17:34:19 2005 UTC (14 years, 8 months ago) by maechler
comments only

Revision 609 - Directory Listing
Modified Fri Mar 4 17:34:03 2005 UTC (14 years, 8 months ago) by maechler
add more %*% methods

Revision 608 - Directory Listing
Modified Fri Mar 4 17:33:29 2005 UTC (14 years, 8 months ago) by maechler
- move dim, dimnames, dimnames<-  methods to "Matrix" 
- add more %*% methods

Revision 607 - Directory Listing
Modified Fri Mar 4 17:33:03 2005 UTC (14 years, 8 months ago) by maechler
- move dim, dimnames, dimnames<-  methods from "dgeMatrix" to here
- setAs(* , to = "matrix")

Revision 606 - Directory Listing
Modified Fri Mar 4 17:29:37 2005 UTC (14 years, 8 months ago) by maechler
add "dMatrix" group methods and doc file

Revision 605 - Directory Listing
Modified Fri Mar 4 17:29:02 2005 UTC (14 years, 8 months ago) by maechler
do not Calloc()/Free() in "good" case of check_scalar_string()

Revision 604 - Directory Listing
Modified Fri Mar 4 17:27:51 2005 UTC (14 years, 8 months ago) by maechler
check for integer 'x'

Revision 603 - Directory Listing
Modified Fri Mar 4 12:53:01 2005 UTC (14 years, 8 months ago) by bates
Define %*% method for dtpMatrix and matrix properly

Revision 602 - Directory Listing
Modified Fri Mar 4 12:48:40 2005 UTC (14 years, 8 months ago) by bates
Remove references to pdfactor

Revision 599 - Directory Listing
Modified Fri Mar 4 03:49:53 2005 UTC (14 years, 8 months ago) by bates
Added C function lmer_fitted

Revision 598 - Directory Listing
Modified Fri Mar 4 03:46:22 2005 UTC (14 years, 8 months ago) by bates
tests for dtpMatrix class

Revision 597 - Directory Listing
Modified Thu Mar 3 19:58:59 2005 UTC (14 years, 8 months ago) by bates
Methods and coercions for the dtpMatrix class

Revision 596 - Directory Listing
Modified Thu Mar 3 05:18:35 2005 UTC (14 years, 8 months ago) by bates
Preparing for 0.95-4 release

Revision 595 - Directory Listing
Modified Thu Mar 3 05:18:11 2005 UTC (14 years, 8 months ago) by bates
Remove pdfactor class

Revision 594 - Directory Listing
Modified Thu Mar 3 05:17:51 2005 UTC (14 years, 8 months ago) by bates
Remove pdfactor class

Revision 593 - Directory Listing
Modified Thu Mar 3 05:17:32 2005 UTC (14 years, 8 months ago) by bates
Remove pdfactor class

Revision 592 - Directory Listing
Modified Thu Mar 3 05:16:50 2005 UTC (14 years, 8 months ago) by bates
Clean up *_validate functions

Revision 591 - Directory Listing
Modified Thu Mar 3 05:16:09 2005 UTC (14 years, 8 months ago) by bates
C functions for dtpMatrix class

Revision 590 - Directory Listing
Modified Wed Mar 2 19:54:23 2005 UTC (14 years, 8 months ago) by bates
more coercions

Revision 589 - Directory Listing
Modified Wed Mar 2 19:53:53 2005 UTC (14 years, 8 months ago) by bates
more coercions

Revision 588 - Directory Listing
Modified Wed Mar 2 18:19:51 2005 UTC (14 years, 8 months ago) by bates
shorten csc_components_transpose to csc_compTr

Revision 587 - Directory Listing
Modified Wed Mar 2 18:19:15 2005 UTC (14 years, 8 months ago) by bates
dsTMatrix_as_dsCMatrix

Revision 586 - Directory Listing
Modified Tue Mar 1 14:55:03 2005 UTC (14 years, 8 months ago) by maechler
more "-Wall" dummy init.s

Revision 585 - Directory Listing
Modified Tue Mar 1 14:54:38 2005 UTC (14 years, 8 months ago) by maechler
typo in SelectQueue[o]neWay; comment

Revision 584 - Directory Listing
Modified Tue Mar 1 14:53:29 2005 UTC (14 years, 8 months ago) by maechler
updated via "--force"

Revision 583 - Directory Listing
Modified Tue Mar 1 11:42:12 2005 UTC (14 years, 8 months ago) by maechler
dgCMatrix: needs explicit "dim" method (should not be needed!)

Revision 582 - Directory Listing
Modified Mon Feb 28 18:15:21 2005 UTC (14 years, 8 months ago) by bates
Internationalization and localization

Revision 579 - Directory Listing
Modified Sun Feb 27 00:04:16 2005 UTC (14 years, 8 months ago) by maechler
dimnames(), "dimnames() <-", better t(), etc

Revision 578 - Directory Listing
Modified Sat Feb 26 18:25:09 2005 UTC (14 years, 8 months ago) by maechler
update (also a bit of Doug's)

Revision 577 - Directory Listing
Modified Sat Feb 26 18:24:35 2005 UTC (14 years, 8 months ago) by maechler
update

Revision 576 - Directory Listing
Modified Sat Feb 26 18:18:30 2005 UTC (14 years, 8 months ago) by maechler
prevent segfault {but not "nicely"}

Revision 575 - Directory Listing
Modified Sat Feb 26 18:07:35 2005 UTC (14 years, 8 months ago) by maechler
use "(.)" against "-Wall" warning

Revision 574 - Directory Listing
Modified Sat Feb 26 18:06:32 2005 UTC (14 years, 8 months ago) by maechler
cosmetic

Revision 573 - Directory Listing
Modified Sat Feb 26 18:06:08 2005 UTC (14 years, 8 months ago) by maechler
more group methods and testing them

Revision 572 - Directory Listing
Modified Fri Feb 25 14:11:54 2005 UTC (14 years, 8 months ago) by bates
Inlined function declarations moved within the conditional expression

Revision 570 - Directory Listing
Modified Fri Feb 25 13:21:03 2005 UTC (14 years, 8 months ago) by bates
Move ScotsSec to mlmRev package

Revision 569 - Directory Listing
Modified Fri Feb 25 13:20:28 2005 UTC (14 years, 8 months ago) by bates
Release 0.95-2

Revision 565 - Directory Listing
Modified Tue Feb 22 01:15:45 2005 UTC (14 years, 9 months ago) by bates
Clean up documentation errors exposed by doxygen

Revision 564 - Directory Listing
Modified Sat Feb 19 03:25:17 2005 UTC (14 years, 9 months ago) by bates
Fix compiler warnings

Revision 563 - Directory Listing
Modified Sat Feb 19 02:08:36 2005 UTC (14 years, 9 months ago) by bates
Clean up warnings from compiler

Revision 561 - Directory Listing
Modified Fri Feb 18 19:24:43 2005 UTC (14 years, 9 months ago) by bates
Release 0.95-1

Revision 560 - Directory Listing
Modified Fri Feb 18 14:29:53 2005 UTC (14 years, 9 months ago) by bates
Argument list for cscb_trsm

Revision 559 - Directory Listing
Modified Fri Feb 18 14:29:03 2005 UTC (14 years, 9 months ago) by bates
Changes for non-trivial cscb-trsm

Revision 558 - Directory Listing
Modified Thu Feb 17 18:12:34 2005 UTC (14 years, 9 months ago) by bates
coercion method documentation

Revision 557 - Directory Listing
Modified Thu Feb 17 01:18:02 2005 UTC (14 years, 9 months ago) by bates
Coercions and methods for the dsTMatrix class

Revision 556 - Directory Listing
Modified Wed Feb 16 20:49:44 2005 UTC (14 years, 9 months ago) by bates
Non-trivial cscb_ldl case

Revision 555 - Directory Listing
Modified Wed Feb 16 20:49:16 2005 UTC (14 years, 9 months ago) by bates
cosmetic changes - reformating

Revision 554 - Directory Listing
Modified Wed Feb 16 13:43:45 2005 UTC (14 years, 9 months ago) by bates
clean up logic

Revision 553 - Directory Listing
Modified Wed Feb 16 13:43:17 2005 UTC (14 years, 9 months ago) by bates
clean up long lines

Revision 552 - Directory Listing
Modified Tue Feb 15 23:39:40 2005 UTC (14 years, 9 months ago) by bates
triangular, triplet sparse matrices

Revision 551 - Directory Listing
Modified Tue Feb 15 22:28:03 2005 UTC (14 years, 9 months ago) by bates
triangular, triplet sparse matrices

Revision 548 - Directory Listing
Modified Tue Feb 15 22:13:03 2005 UTC (14 years, 9 months ago) by bates
Suppress test that was causing a segfault

Revision 547 - Directory Listing
Modified Tue Feb 15 22:09:25 2005 UTC (14 years, 9 months ago) by bates
Methods and coercions for the dtTMatrix class

Revision 546 - Directory Listing
Modified Tue Feb 15 22:09:12 2005 UTC (14 years, 9 months ago) by bates
Methods and coercions for the dtTMatrix class

Revision 544 - Directory Listing
Modified Mon Feb 14 21:04:03 2005 UTC (14 years, 9 months ago) by bates
Comment out a test that is causing a segfault

Revision 543 - Directory Listing
Modified Sat Feb 12 13:37:46 2005 UTC (14 years, 9 months ago) by bates
Changes for non-nested vector-valued random effects

Revision 542 - Directory Listing
Modified Thu Feb 10 17:30:10 2005 UTC (14 years, 9 months ago) by maechler
"Arith" group methods work!

Revision 541 - Directory Listing
Modified Thu Feb 10 14:36:45 2005 UTC (14 years, 9 months ago) by maechler
oops!

Revision 540 - Directory Listing
Modified Thu Feb 10 14:32:59 2005 UTC (14 years, 9 months ago) by maechler
more "Done"

Revision 539 - Directory Listing
Modified Thu Feb 10 13:53:28 2005 UTC (14 years, 9 months ago) by maechler
update Version (just in case)

Revision 538 - Directory Listing
Modified Thu Feb 10 13:50:27 2005 UTC (14 years, 9 months ago) by maechler
add @Dimnames (-> new "mm")

Revision 537 - Directory Listing
Modified Thu Feb 10 09:45:31 2005 UTC (14 years, 9 months ago) by maechler
new

Revision 536 - Directory Listing
Modified Thu Feb 10 08:15:12 2005 UTC (14 years, 9 months ago) by bates
rearranging utility functions in the C code

Revision 534 - Directory Listing
Modified Tue Feb 8 08:59:31 2005 UTC (14 years, 9 months ago) by maechler
use mkString(); "uplo" and "diag" must be uppercase

Revision 533 - Directory Listing
Modified Tue Feb 8 07:30:59 2005 UTC (14 years, 9 months ago) by maechler
coercion

Revision 532 - Directory Listing
Modified Mon Feb 7 17:23:54 2005 UTC (14 years, 9 months ago) by maechler
use "true" matrix; also "show" inaccuracy

Revision 531 - Directory Listing
Modified Mon Feb 7 11:04:53 2005 UTC (14 years, 9 months ago) by bates
Include the $(SUBSTAMP) target

Revision 530 - Directory Listing
Modified Mon Feb 7 10:58:27 2005 UTC (14 years, 9 months ago) by bates
Fixes from the TODO list

Revision 529 - Directory Listing
Modified Mon Feb 7 10:56:34 2005 UTC (14 years, 9 months ago) by bates
Fixes from the TODO list

Revision 528 - Directory Listing
Modified Mon Feb 7 10:52:50 2005 UTC (14 years, 9 months ago) by bates
Spelling mistake

Revision 527 - Directory Listing
Modified Mon Feb 7 10:52:37 2005 UTC (14 years, 9 months ago) by bates
Spelling mistake

Revision 526 - Directory Listing
Modified Mon Feb 7 10:50:20 2005 UTC (14 years, 9 months ago) by bates
Include a dependence of the LIB target on the OBJS

Revision 525 - Directory Listing
Modified Mon Feb 7 10:49:20 2005 UTC (14 years, 9 months ago) by bates
Force a call to Make lib in the subdirectories whenever the SHLIB
target is built.  Right now this isn't working properly.

Revision 524 - Directory Listing
Modified Mon Feb 7 09:30:58 2005 UTC (14 years, 9 months ago) by maechler
tol was too tight

Revision 523 - Directory Listing
Modified Mon Feb 7 09:25:50 2005 UTC (14 years, 9 months ago) by maechler
stop() for error()

Revision 522 - Directory Listing
Modified Mon Feb 7 09:25:25 2005 UTC (14 years, 9 months ago) by maechler
oops! add library(.)

Revision 521 - Directory Listing
Modified Sat Feb 5 17:04:56 2005 UTC (14 years, 9 months ago) by maechler
small update

Revision 520 - Directory Listing
Modified Sat Feb 5 14:41:29 2005 UTC (14 years, 9 months ago) by maechler
add "surprising formula"

Revision 519 - Directory Listing
Modified Sat Feb 5 14:25:56 2005 UTC (14 years, 9 months ago) by maechler
some matrix exponential tests

Revision 518 - Directory Listing
Modified Sat Feb 5 13:55:11 2005 UTC (14 years, 9 months ago) by maechler
emacs header

Revision 517 - Directory Listing
Modified Sat Feb 5 13:54:37 2005 UTC (14 years, 9 months ago) by maechler
more ( need to talk )

Revision 516 - Directory Listing
Modified Sat Feb 5 13:54:20 2005 UTC (14 years, 9 months ago) by maechler
chk.matrix() and more

Revision 515 - Directory Listing
Modified Sat Feb 5 13:53:55 2005 UTC (14 years, 9 months ago) by maechler
example (and indentation)

Revision 514 - Directory Listing
Modified Fri Feb 4 23:57:12 2005 UTC (14 years, 9 months ago) by maechler
minor cleanup

Revision 513 - Directory Listing
Modified Fri Feb 4 23:46:08 2005 UTC (14 years, 9 months ago) by maechler
require() is not needed; ddense.. for "dsp"; cosmetic

Revision 512 - Directory Listing
Modified Fri Feb 4 23:45:12 2005 UTC (14 years, 9 months ago) by maechler
better show(); using new option "max.print"

Revision 511 - Directory Listing
Modified Fri Feb 4 23:44:00 2005 UTC (14 years, 9 months ago) by maechler
update

Revision 510 - Directory Listing
Modified Fri Feb 4 23:36:17 2005 UTC (14 years, 9 months ago) by maechler
dimnames?

Revision 509 - Directory Listing
Modified Fri Feb 4 23:34:01 2005 UTC (14 years, 9 months ago) by maechler
some new tests, using stopifnot()

Revision 508 - Directory Listing
Modified Fri Feb 4 18:22:28 2005 UTC (14 years, 9 months ago) by maechler
oops! (in example)

Revision 507 - Directory Listing
Modified Fri Feb 4 18:19:29 2005 UTC (14 years, 9 months ago) by maechler
2 typos

Revision 506 - Directory Listing
Modified Fri Feb 4 18:19:08 2005 UTC (14 years, 9 months ago) by maechler
cosmetic

Revision 505 - Directory Listing
Modified Fri Feb 4 18:18:48 2005 UTC (14 years, 9 months ago) by maechler
cosmetic;
call  image() in example

Revision 504 - Directory Listing
Modified Fri Feb 4 18:18:25 2005 UTC (14 years, 9 months ago) by maechler
add examples

Revision 503 - Directory Listing
Modified Fri Feb 4 18:18:06 2005 UTC (14 years, 9 months ago) by maechler
typo

Revision 502 - Directory Listing
Modified Fri Feb 4 18:17:53 2005 UTC (14 years, 9 months ago) by maechler
cosmetic

Revision 501 - Directory Listing
Modified Fri Feb 4 18:17:36 2005 UTC (14 years, 9 months ago) by maechler
update

Revision 500 - Directory Listing
Modified Fri Feb 4 18:17:18 2005 UTC (14 years, 9 months ago) by maechler
typo;
extend example with stopifnot()

Revision 499 - Directory Listing
Modified Fri Feb 4 18:16:32 2005 UTC (14 years, 9 months ago) by maechler
- wrap line
- if(.) style in as.Matrix()

Revision 498 - Directory Listing
Modified Fri Feb 4 18:15:54 2005 UTC (14 years, 9 months ago) by maechler
cosmetic

Revision 497 - Directory Listing
Modified Fri Feb 4 18:15:24 2005 UTC (14 years, 9 months ago) by maechler
+2

Revision 496 - Directory Listing
Modified Fri Feb 4 18:14:08 2005 UTC (14 years, 9 months ago) by maechler
- get rid of two extraneous declarations
- use the SWAP(.) macro {as in other places}

Revision 495 - Directory Listing
Modified Thu Feb 3 18:48:31 2005 UTC (14 years, 9 months ago) by bates
Initial implementation of the Schur generic

Revision 494 - Directory Listing
Modified Thu Feb 3 18:47:41 2005 UTC (14 years, 9 months ago) by bates
Cleanup

Revision 493 - Directory Listing
Modified Thu Feb 3 18:47:20 2005 UTC (14 years, 9 months ago) by bates
Move the make_named function to Mutils as Matrix_make_named

Revision 492 - Directory Listing
Modified Thu Feb 3 14:24:03 2005 UTC (14 years, 9 months ago) by bates
Getting package to pass CMD check

Revision 491 - Directory Listing
Modified Wed Feb 2 19:40:26 2005 UTC (14 years, 9 months ago) by bates
renaming and rearranging classes

Revision 490 - Directory Listing
Modified Wed Feb 2 19:13:42 2005 UTC (14 years, 9 months ago) by bates
renaming and rearranging classes

Revision 489 - Directory Listing
Modified Wed Feb 2 19:12:03 2005 UTC (14 years, 9 months ago) by bates
renaming and rearranging classes

Revision 488 - Directory Listing
Modified Wed Feb 2 19:11:51 2005 UTC (14 years, 9 months ago) by bates
renaming and rearranging classes

Revision 487 - Directory Listing
Modified Wed Feb 2 19:02:36 2005 UTC (14 years, 9 months ago) by bates
renaming and rearranging classes

Revision 486 - Directory Listing
Modified Wed Feb 2 17:41:09 2005 UTC (14 years, 9 months ago) by bates
renaming and rearranging classes

Revision 485 - Directory Listing
Modified Wed Feb 2 17:20:55 2005 UTC (14 years, 9 months ago) by bates
renaming and rearranging classes

Revision 484 - Directory Listing
Modified Wed Feb 2 17:14:07 2005 UTC (14 years, 9 months ago) by bates
renaming and rearranging classes

Revision 483 - Directory Listing
Modified Wed Feb 2 16:11:21 2005 UTC (14 years, 9 months ago) by bates
renaming and rearranging classes

Revision 482 - Directory Listing
Modified Wed Feb 2 15:37:31 2005 UTC (14 years, 9 months ago) by bates
renaming and rearranging classes

Revision 481 - Directory Listing
Modified Wed Feb 2 15:01:50 2005 UTC (14 years, 9 months ago) by bates
Renaming and reorganizing classes

Revision 480 - Directory Listing
Modified Wed Feb 2 14:59:12 2005 UTC (14 years, 9 months ago) by bates
Renaming and reorganizing classes

Revision 479 - Directory Listing
Modified Wed Feb 2 14:52:26 2005 UTC (14 years, 9 months ago) by bates
Renaming and reorganizing classes

Revision 478 - Directory Listing
Modified Wed Feb 2 14:33:51 2005 UTC (14 years, 9 months ago) by bates
Renaming and reorganizing classes

Revision 477 - Directory Listing
Modified Wed Feb 2 14:14:59 2005 UTC (14 years, 9 months ago) by bates
Renaming and reorganizing classes

Revision 476 - Directory Listing
Modified Wed Feb 2 11:51:24 2005 UTC (14 years, 9 months ago) by bates
Change name of slot from factorization to factors

Revision 475 - Directory Listing
Modified Tue Feb 1 14:44:06 2005 UTC (14 years, 9 months ago) by maechler
Martin`s cosmetics

Revision 474 - Directory Listing
Modified Tue Feb 1 14:41:24 2005 UTC (14 years, 9 months ago) by maechler
Hilbert(0)

Revision 473 - Directory Listing
Modified Tue Feb 1 14:41:09 2005 UTC (14 years, 9 months ago) by maechler
more po-tests

Revision 472 - Directory Listing
Modified Mon Jan 31 21:23:39 2005 UTC (14 years, 9 months ago) by maechler
adding

Revision 471 - Directory Listing
Modified Mon Jan 31 21:17:57 2005 UTC (14 years, 9 months ago) by maechler
as.Matrix() shorter; cosmetic

Revision 470 - Directory Listing
Modified Mon Jan 31 21:14:46 2005 UTC (14 years, 9 months ago) by maechler
use *Rout as well

Revision 466 - Directory Listing
Modified Sat Jan 29 14:14:31 2005 UTC (14 years, 9 months ago) by bates
Add an externally accessible entry point to lmer_Crosstab

Revision 465 - Directory Listing
Modified Sat Jan 29 14:14:01 2005 UTC (14 years, 9 months ago) by bates
Add an externally accessible entry point to lmer_Crosstab

Revision 464 - Directory Listing
Modified Sat Jan 29 14:12:53 2005 UTC (14 years, 9 months ago) by bates
Clean up Lind calculation

Revision 463 - Directory Listing
Modified Sat Jan 29 14:11:34 2005 UTC (14 years, 9 months ago) by bates
Make make clean cleaner

Revision 462 - Directory Listing
Modified Sat Jan 29 14:10:36 2005 UTC (14 years, 9 months ago) by bates
Move lmer class to lme4

Revision 461 - Directory Listing
Modified Sat Jan 29 14:09:38 2005 UTC (14 years, 9 months ago) by bates
Add expm function

Revision 460 - Directory Listing
Modified Sat Jan 29 14:08:32 2005 UTC (14 years, 9 months ago) by bates
Preparation for new release

Revision 459 - Directory Listing
Modified Sat Jan 29 14:08:22 2005 UTC (14 years, 9 months ago) by bates
Preparation for new release

Revision 458 - Directory Listing
Modified Sat Jan 29 14:07:34 2005 UTC (14 years, 9 months ago) by bates
A valuable reference

Revision 451 - Directory Listing
Modified Sun Jan 23 10:05:53 2005 UTC (14 years, 10 months ago) by bates
New coercion method for cscBlocked objects

Revision 450 - Directory Listing
Modified Sun Jan 23 10:05:02 2005 UTC (14 years, 10 months ago) by bates
New release

Revision 448 - Directory Listing
Modified Fri Jan 21 21:59:45 2005 UTC (14 years, 10 months ago) by bates
Release 0.8-23

Revision 447 - Directory Listing
Modified Fri Jan 21 12:17:56 2005 UTC (14 years, 10 months ago) by bates
Change char flags to cblas enum types

Revision 445 - Directory Listing
Modified Wed Jan 19 19:06:24 2005 UTC (14 years, 10 months ago) by bates
Off-diagonals from L, not ZZpO

Revision 444 - Directory Listing
Modified Wed Jan 19 19:05:15 2005 UTC (14 years, 10 months ago) by bates
Off-diagonals from L, not ZZpO

Revision 443 - Directory Listing
Modified Wed Jan 19 11:28:00 2005 UTC (14 years, 10 months ago) by bates
Remove references to the Linv slot.  Change to the extended parent
pairs.  Extensive changes in lmer_invert.  These still probably have
errors but this check in is to provide a checkpoint.

Revision 442 - Directory Listing
Modified Wed Jan 19 11:25:39 2005 UTC (14 years, 10 months ago) by bates
Remove any references to Linv.  Rewrite routines to use a solution
from L rather than multiplication by the inverse.  Change calling
sequences to use the Parent array.  Change the parent arrays to
extended parent pairs.

Revision 441 - Directory Listing
Modified Wed Jan 19 11:22:07 2005 UTC (14 years, 10 months ago) by bates
See if use of cblas would be a good idea

Revision 440 - Directory Listing
Modified Wed Jan 19 11:21:28 2005 UTC (14 years, 10 months ago) by bates
Remove Linv slot in lmer class

Revision 439 - Directory Listing
Modified Wed Jan 19 11:20:32 2005 UTC (14 years, 10 months ago) by bates
See if use of cblas would be a good idea

Revision 438 - Directory Listing
Modified Mon Jan 17 12:48:32 2005 UTC (14 years, 10 months ago) by bates
Remove mistaken transpose

Revision 437 - Directory Listing
Modified Mon Jan 17 12:47:29 2005 UTC (14 years, 10 months ago) by bates
Remove Linv references

Revision 436 - Directory Listing
Modified Mon Jan 17 12:46:13 2005 UTC (14 years, 10 months ago) by bates
Add slots to lmer class

Revision 434 - Directory Listing
Modified Thu Jan 13 19:36:12 2005 UTC (14 years, 10 months ago) by bates
Added and modified many functions to do solutions rather than inversions.

Revision 433 - Directory Listing
Modified Thu Jan 13 19:35:19 2005 UTC (14 years, 10 months ago) by bates
Add the bVar slot to the lmer object

Revision 432 - Directory Listing
Modified Thu Jan 13 19:34:37 2005 UTC (14 years, 10 months ago) by bates
Define the AZERO macro

Revision 431 - Directory Listing
Modified Thu Jan 13 19:34:03 2005 UTC (14 years, 10 months ago) by bates
Use the AZERO macro

Revision 430 - Directory Listing
Modified Thu Jan 13 19:32:26 2005 UTC (14 years, 10 months ago) by bates
Add definitions of cscb_trsm and cscb_trcbsm

Revision 429 - Directory Listing
Modified Thu Jan 13 19:31:10 2005 UTC (14 years, 10 months ago) by bates
Many changes with respect to the representation and calculation steps.

Revision 425 - Directory Listing
Modified Wed Jan 5 15:26:34 2005 UTC (14 years, 10 months ago) by bates
decrement when counting down

Revision 424 - Directory Listing
Modified Wed Jan 5 13:50:30 2005 UTC (14 years, 10 months ago) by bates
Minor typos

Revision 422 - Directory Listing
Modified Tue Jan 4 23:45:15 2005 UTC (14 years, 10 months ago) by bates
Check in prior to leaving for Zuerich

Revision 420 - Directory Listing
Modified Mon Jan 3 19:26:58 2005 UTC (14 years, 10 months ago) by bates
Change to the lmer representation

Revision 419 - Directory Listing
Modified Mon Jan 3 19:21:18 2005 UTC (14 years, 10 months ago) by bates
Change to the lmer representation

Revision 418 - Directory Listing
Modified Mon Jan 3 19:16:36 2005 UTC (14 years, 10 months ago) by bates
Change to the lmer representation

Revision 417 - Directory Listing
Modified Mon Jan 3 19:14:22 2005 UTC (14 years, 10 months ago) by bates
Change to the lmer representation

Revision 415 - Directory Listing
Modified Mon Jan 3 19:05:11 2005 UTC (14 years, 10 months ago) by bates
Change to the lmer representation

Revision 412 - Directory Listing
Modified Tue Dec 28 15:06:55 2004 UTC (14 years, 10 months ago) by bates


Revision 410 - Directory Listing
Modified Tue Dec 28 14:51:42 2004 UTC (14 years, 10 months ago) by bates
Working on the lmer classes

Revision 398 - Directory Listing
Modified Thu Dec 16 19:31:11 2004 UTC (14 years, 11 months ago) by bates
New release

Revision 397 - Directory Listing
Modified Thu Dec 16 19:15:32 2004 UTC (14 years, 11 months ago) by bates
Add arguments to ssclme_to_lme

Revision 396 - Directory Listing
Modified Thu Dec 16 19:14:49 2004 UTC (14 years, 11 months ago) by bates
Document new coercion and determinant methods

Revision 392 - Directory Listing
Modified Tue Dec 14 20:01:16 2004 UTC (14 years, 11 months ago) by bates


Revision 391 - Directory Listing
Modified Tue Dec 14 20:00:15 2004 UTC (14 years, 11 months ago) by bates
Add a coercion for tripletMatrix to matrix

Revision 390 - Directory Listing
Modified Tue Dec 14 19:58:55 2004 UTC (14 years, 11 months ago) by bates
Add a coercion for tripletMatrix to matrix

Revision 389 - Directory Listing
Modified Tue Dec 14 19:58:04 2004 UTC (14 years, 11 months ago) by bates
Remove bbCrosstab and references to it

Revision 388 - Directory Listing
Modified Mon Dec 13 16:00:22 2004 UTC (14 years, 11 months ago) by bates
New release

Revision 387 - Directory Listing
Modified Mon Dec 13 16:00:04 2004 UTC (14 years, 11 months ago) by bates
Keep -Wall happy

Revision 386 - Directory Listing
Modified Mon Dec 13 15:59:24 2004 UTC (14 years, 11 months ago) by bates
Fix bug in multivariate/multiple groups case

Revision 379 - Directory Listing
Modified Sat Dec 11 13:48:29 2004 UTC (14 years, 11 months ago) by bates
make -Wall happy

Revision 378 - Directory Listing
Modified Sat Dec 11 13:47:45 2004 UTC (14 years, 11 months ago) by bates
make -Wall happy

Revision 377 - Directory Listing
Modified Sat Dec 11 13:46:42 2004 UTC (14 years, 11 months ago) by bates
make -Wall happy

Revision 376 - Directory Listing
Modified Sat Dec 11 13:44:01 2004 UTC (14 years, 11 months ago) by bates
declaration of R_alloc

Revision 375 - Directory Listing
Modified Sun Dec 5 13:55:48 2004 UTC (14 years, 11 months ago) by bates


Revision 374 - Directory Listing
Modified Sun Dec 5 13:55:19 2004 UTC (14 years, 11 months ago) by bates
renaming bbCrosstab to bCrosstab

Revision 373 - Directory Listing
Modified Sun Dec 5 13:54:32 2004 UTC (14 years, 11 months ago) by bates
Fixed nested scalar r.e., multivariate bug still outstanding

Revision 372 - Directory Listing
Modified Sun Dec 5 13:53:29 2004 UTC (14 years, 11 months ago) by bates
R-specific versions of ldl

Revision 371 - Directory Listing
Modified Sun Dec 5 13:52:25 2004 UTC (14 years, 11 months ago) by bates
R-specific versions of ldl

Revision 370 - Directory Listing
Modified Sun Dec 5 13:52:06 2004 UTC (14 years, 11 months ago) by bates
R-specific versions of ldl

Revision 369 - Directory Listing
Modified Sun Dec 5 13:51:27 2004 UTC (14 years, 11 months ago) by bates
R-specific versions of ldl

Revision 368 - Directory Listing
Modified Sun Dec 5 13:50:54 2004 UTC (14 years, 11 months ago) by bates
R-specific versions of ldl

Revision 367 - Directory Listing
Modified Sun Dec 5 13:50:43 2004 UTC (14 years, 11 months ago) by bates
R-specific versions of ldl

Revision 366 - Directory Listing
Modified Sun Dec 5 13:49:51 2004 UTC (14 years, 11 months ago) by bates
R-specific versions of ldl

Revision 359 - Directory Listing
Modified Sat Nov 27 17:58:23 2004 UTC (14 years, 11 months ago) by bates
Add a call to ldl_numeric to obtain row indices of diagonal blocks of L

Revision 358 - Directory Listing
Modified Sat Nov 27 17:57:19 2004 UTC (14 years, 11 months ago) by bates
separate suboperations from Parent_inverse

Revision 357 - Directory Listing
Modified Sat Nov 27 17:56:13 2004 UTC (14 years, 11 months ago) by bates
silly typo

Revision 356 - Directory Listing
Modified Sat Nov 27 01:45:39 2004 UTC (14 years, 11 months ago) by bates
Add block updates in bCrosstab_convert

Revision 355 - Directory Listing
Modified Sat Nov 27 01:45:01 2004 UTC (14 years, 11 months ago) by bates
Make Parent_inverse visible in include file

Revision 354 - Directory Listing
Modified Sat Nov 27 01:44:15 2004 UTC (14 years, 11 months ago) by bates
Extract dependencies to an include file

Revision 353 - Directory Listing
Modified Sat Nov 27 01:43:15 2004 UTC (14 years, 11 months ago) by bates
Make factor reordering for bCrosstab optional

Revision 352 - Directory Listing
Modified Tue Nov 23 15:41:03 2004 UTC (15 years ago) by bates
remove redundant method alias

Revision 351 - Directory Listing
Modified Tue Nov 23 15:40:28 2004 UTC (15 years ago) by bates
Move include file to C sources so the .h file can be included without pulling in a bunch of other stuff

Revision 350 - Directory Listing
Modified Tue Nov 23 15:39:45 2004 UTC (15 years ago) by bates


Revision 349 - Directory Listing
Modified Tue Nov 23 15:39:23 2004 UTC (15 years ago) by bates
Change name of blocked/blocked crosstabulation to blocked crosstabulation

Revision 348 - Directory Listing
Modified Tue Nov 23 15:38:31 2004 UTC (15 years ago) by bates
add blocked crosstabulations

Revision 347 - Directory Listing
Modified Tue Nov 23 15:37:58 2004 UTC (15 years ago) by bates
add blocked crosstabulations

Revision 346 - Directory Listing
Modified Tue Nov 23 15:37:12 2004 UTC (15 years ago) by bates
simple test of crossproduct for valgrind

Revision 345 - Directory Listing
Modified Tue Nov 23 15:35:55 2004 UTC (15 years ago) by bates
keep valgrind happy

Revision 344 - Directory Listing
Modified Mon Nov 15 23:29:41 2004 UTC (15 years ago) by bates
Add

Revision 343 - Directory Listing
Modified Mon Nov 15 23:29:28 2004 UTC (15 years ago) by bates
Fix on uninitialized value

Revision 342 - Directory Listing
Modified Mon Nov 15 13:55:52 2004 UTC (15 years ago) by bates
Updates for factorization name and default value

Revision 341 - Directory Listing
Modified Fri Nov 12 21:20:14 2004 UTC (15 years ago) by bates
Use Matrix_rcondSym

Revision 340 - Directory Listing
Modified Fri Nov 12 21:19:39 2004 UTC (15 years ago) by bates
Add syrk code

Revision 339 - Directory Listing
Modified Fri Nov 12 21:19:19 2004 UTC (15 years ago) by bates
Add syrk code

Revision 338 - Directory Listing
Modified Fri Nov 12 21:17:36 2004 UTC (15 years ago) by bates
Initialize all slots

Revision 337 - Directory Listing
Modified Fri Nov 12 21:13:59 2004 UTC (15 years ago) by bates
Add addition method

Revision 336 - Directory Listing
Modified Fri Nov 12 21:13:40 2004 UTC (15 years ago) by bates
Add tcrossprod method

Revision 335 - Directory Listing
Modified Fri Nov 12 21:12:54 2004 UTC (15 years ago) by bates
Add cscBlocked class

Revision 334 - Directory Listing
Modified Fri Nov 12 21:11:45 2004 UTC (15 years ago) by bates
Add generics

Revision 333 - Directory Listing
Modified Fri Nov 12 21:10:17 2004 UTC (15 years ago) by bates
Add classes

Revision 332 - Directory Listing
Modified Fri Nov 12 21:04:36 2004 UTC (15 years ago) by bates
initialize all slots in a NEW_OBJECT

Revision 331 - Directory Listing
Modified Fri Nov 12 21:03:24 2004 UTC (15 years ago) by bates
remove zeros from sparse matrix

Revision 330 - Directory Listing
Modified Fri Nov 12 21:02:51 2004 UTC (15 years ago) by bates
update methods

Revision 329 - Directory Listing
Modified Fri Nov 12 21:01:19 2004 UTC (15 years ago) by bates
Keep symbols and filenames consistent

Revision 328 - Directory Listing
Modified Sat Nov 6 18:05:00 2004 UTC (15 years ago) by bates
Keep Makefile.win in sync with Makefile

Revision 327 - Directory Listing
Modified Sat Nov 6 18:04:31 2004 UTC (15 years ago) by bates
New release

Revision 326 - Directory Listing
Modified Sat Nov 6 18:03:14 2004 UTC (15 years ago) by bates
Add blocked/blocked cross-tabulation class

Revision 325 - Directory Listing
Modified Sat Nov 6 18:03:00 2004 UTC (15 years ago) by bates
Add blocked/blocked cross-tabulation class

Revision 324 - Directory Listing
Modified Sat Nov 6 18:02:01 2004 UTC (15 years ago) by bates
Cosmetic changes

Revision 311 - Directory Listing
Modified Wed Oct 27 21:41:02 2004 UTC (15 years ago) by bates
Keep -Wall happy

Revision 310 - Directory Listing
Modified Wed Oct 27 21:40:08 2004 UTC (15 years ago) by bates
add a blas-like routine

Revision 309 - Directory Listing
Modified Wed Oct 27 21:40:02 2004 UTC (15 years ago) by bates
add a blas-like routine

Revision 308 - Directory Listing
Modified Wed Oct 27 21:39:44 2004 UTC (15 years ago) by bates
cosmetic changes

Revision 307 - Directory Listing
Modified Wed Oct 27 21:38:58 2004 UTC (15 years ago) by bates
Changes for check on Debian dgesdd

Revision 306 - Directory Listing
Modified Wed Oct 27 21:38:33 2004 UTC (15 years ago) by bates
Changes for check on Debian dgesdd

Revision 305 - Directory Listing
Modified Wed Oct 27 21:36:19 2004 UTC (15 years ago) by bates
updates and downdates

Revision 304 - Directory Listing
Modified Wed Oct 27 21:35:13 2004 UTC (15 years ago) by bates
lmeRep_invert now applies to multiple, nested grouping factors

Revision 303 - Directory Listing
Modified Wed Oct 27 21:33:03 2004 UTC (15 years ago) by bates


Revision 302 - Directory Listing
Modified Wed Oct 27 21:32:37 2004 UTC (15 years ago) by bates
Remove PACKAGE="Matrix" in .Call

Revision 301 - Directory Listing
Modified Sun Oct 17 05:06:04 2004 UTC (15 years, 1 month ago) by bates
transfer to another computer

Revision 300 - Directory Listing
Modified Tue Oct 12 15:44:15 2004 UTC (15 years, 1 month ago) by bates
Adding lmeRep_L_sm and support routines

Revision 299 - Directory Listing
Modified Fri Oct 8 14:48:06 2004 UTC (15 years, 1 month ago) by bates
Only positions, not counts, from crossproduct

Revision 298 - Directory Listing
Modified Fri Oct 8 13:47:20 2004 UTC (15 years, 1 month ago) by bates
added validate functions

Revision 297 - Directory Listing
Modified Mon Oct 4 17:13:42 2004 UTC (15 years, 1 month ago) by bates
Add registration of .Call functions

Revision 296 - Directory Listing
Modified Mon Oct 4 17:13:29 2004 UTC (15 years, 1 month ago) by bates
Add registration of .Call functions

Revision 291 - Directory Listing
Modified Sun Oct 3 21:51:33 2004 UTC (15 years, 1 month ago) by bates
Release 0.8-15

Revision 290 - Directory Listing
Modified Sat Oct 2 19:22:24 2004 UTC (15 years, 1 month ago) by deepayan
fixed minor bug in panel function

Revision 283 - Directory Listing
Modified Sat Oct 2 17:05:34 2004 UTC (15 years, 1 month ago) by bates
check for lattice package in image methods

Revision 282 - Directory Listing
Modified Sat Oct 2 15:03:47 2004 UTC (15 years, 1 month ago) by bates
Bug fixes in 0.8-14

Revision 281 - Directory Listing
Modified Sat Oct 2 15:03:09 2004 UTC (15 years, 1 month ago) by bates
Document cscBlocked class

Revision 280 - Directory Listing
Modified Mon Sep 13 12:32:23 2004 UTC (15 years, 2 months ago) by bates
minor format change

Revision 279 - Directory Listing
Modified Sat Sep 11 14:40:25 2004 UTC (15 years, 2 months ago) by deepayan
fixed image method

Revision 275 - Directory Listing
Modified Fri Sep 3 18:55:14 2004 UTC (15 years, 2 months ago) by bates
New storage format - currently works for single grouping factor

Revision 274 - Directory Listing
Modified Thu Sep 2 23:14:51 2004 UTC (15 years, 2 months ago) by bates
Interim version of lmeRep - not yet complete

Revision 273 - Directory Listing
Modified Thu Sep 2 23:14:16 2004 UTC (15 years, 2 months ago) by bates
Add cscBlocked

Revision 272 - Directory Listing
Modified Thu Sep 2 23:14:00 2004 UTC (15 years, 2 months ago) by bates
Add cscBlocked, tweak lmeRep

Revision 271 - Directory Listing
Modified Thu Sep 2 23:12:30 2004 UTC (15 years, 2 months ago) by bates
Prepare for new release

Revision 268 - Directory Listing
Modified Tue Aug 31 19:13:33 2004 UTC (15 years, 2 months ago) by bates
New version

Revision 264 - Directory Listing
Modified Mon Aug 30 13:24:53 2004 UTC (15 years, 2 months ago) by bates
Initial lmeRep_update_mm modifications for multiple grouping factors

Revision 263 - Directory Listing
Modified Thu Aug 26 16:01:35 2004 UTC (15 years, 2 months ago) by bates
extending lmeRep to multiple nested grouping factors

Revision 258 - Directory Listing
Modified Tue Aug 24 14:22:13 2004 UTC (15 years, 3 months ago) by bates
Preparing for a new release

Revision 257 - Directory Listing
Modified Tue Aug 24 02:08:08 2004 UTC (15 years, 3 months ago) by bates
Remove taucs, add lmeRep, new release

Revision 255 - Directory Listing
Modified Fri Aug 20 16:27:15 2004 UTC (15 years, 3 months ago) by bates
Add the lmeRep class

Revision 254 - Directory Listing
Modified Thu Aug 19 15:20:27 2004 UTC (15 years, 3 months ago) by deepayan
fixed problem in image method when not all rows and columns had at least one entry

Revision 250 - Directory Listing
Modified Tue Aug 17 16:50:27 2004 UTC (15 years, 3 months ago) by bates
cleanup in EMsteps_verbose_print

Revision 247 - Directory Listing
Modified Mon Jul 12 17:41:57 2004 UTC (15 years, 4 months ago) by bates
Combine ssclme_coef and ssclme_coefUnc, ssclme_coefGets and ssclme_coefGetsUnc.  Reorganize gradient code in preparation for Hessian calculations.

Revision 245 - Directory Listing
Modified Mon Jul 12 12:46:54 2004 UTC (15 years, 4 months ago) by bates
Remove warnings, new release, change gradient calculation method

Revision 241 - Directory Listing
Modified Wed Jul 7 18:23:11 2004 UTC (15 years, 4 months ago) by bates
Remove pdMat classes

Revision 238 - Directory Listing
Modified Fri Jul 2 14:36:08 2004 UTC (15 years, 4 months ago) by bates
Updated Hessian method to symmetrize the result

Revision 237 - Directory Listing
Modified Thu Jul 1 03:20:33 2004 UTC (15 years, 4 months ago) by bates
Added stub of a Hessian generic and methods.

Revision 229 - Directory Listing
Modified Tue Jun 15 21:37:15 2004 UTC (15 years, 5 months ago) by bates
Escape % characters in .Rd files

Revision 213 - Directory Listing
Modified Mon Jun 7 19:32:00 2004 UTC (15 years, 5 months ago) by bates
Ready for next release

Revision 209 - Directory Listing
Modified Thu Jun 3 18:22:56 2004 UTC (15 years, 5 months ago) by bates
Combine the two ldl_symbolic routines

Revision 205 - Directory Listing
Modified Tue Jun 1 21:36:47 2004 UTC (15 years, 5 months ago) by bates
Prepare for next release

Revision 202 - Directory Listing
Modified Tue Jun 1 19:38:39 2004 UTC (15 years, 5 months ago) by bates
Be more careful in calls to require

Revision 190 - Directory Listing
Modified Mon May 31 19:52:33 2004 UTC (15 years, 5 months ago) by bates
updated automatically

Revision 189 - Directory Listing
Modified Mon May 31 19:03:51 2004 UTC (15 years, 5 months ago) by bates
Doxygen configuration file

Revision 188 - Directory Listing
Modified Mon May 31 18:50:01 2004 UTC (15 years, 5 months ago) by bates
Moving Doxyfile to the Matrix package

Revision 185 - Directory Listing
Modified Sun May 30 22:46:01 2004 UTC (15 years, 5 months ago) by bates
Adding garbage collection to timings

Revision 184 - Directory Listing
Modified Sun May 30 22:38:37 2004 UTC (15 years, 5 months ago) by bates
Experiments with projecting

Revision 176 - Directory Listing
Modified Fri May 28 13:23:44 2004 UTC (15 years, 5 months ago) by bates
Adding documentation - cleaning up code

Revision 174 - Directory Listing
Modified Wed May 19 16:45:00 2004 UTC (15 years, 6 months ago) by bates
remove unused variable

Revision 168 - Directory Listing
Modified Wed May 19 16:18:48 2004 UTC (15 years, 6 months ago) by bates
Multiple factors with some ni > 1

Revision 166 - Directory Listing
Modified Sat May 15 12:59:43 2004 UTC (15 years, 6 months ago) by bates
Accurate EM iteration count

Revision 164 - Directory Listing
Modified Fri May 14 21:00:04 2004 UTC (15 years, 6 months ago) by bates
Moving utilities to Matrix package

Revision 159 - Directory Listing
Modified Sun May 9 22:06:53 2004 UTC (15 years, 6 months ago) by bates
Remove storage of L-inverse

Revision 158 - Directory Listing
Modified Sun May 9 17:06:12 2004 UTC (15 years, 6 months ago) by bates
maxLI=0 option works

Revision 157 - Directory Listing
Modified Sun May 9 14:26:36 2004 UTC (15 years, 6 months ago) by bates
More attempts at the bVar calculation

Revision 153 - Directory Listing
Modified Fri May 7 19:35:35 2004 UTC (15 years, 6 months ago) by bates
Add routines to project and ldl_symbolic the ctab

Revision 150 - Directory Listing
Modified Tue May 4 22:52:19 2004 UTC (15 years, 6 months ago) by bates
Confused conflicts in checkins

Revision 149 - Directory Listing
Modified Tue May 4 22:30:39 2004 UTC (15 years, 6 months ago) by bates
Previous to changing permutation method

Revision 148 - Directory Listing
Modified Mon May 3 12:49:17 2004 UTC (15 years, 6 months ago) by bates
Rearranging code to isolate Metis includes

Revision 146 - Directory Listing
Modified Sat May 1 20:27:04 2004 UTC (15 years, 6 months ago) by bates
Yet another permutation calculation method

Revision 143 - Directory Listing
Modified Fri Apr 30 20:33:01 2004 UTC (15 years, 6 months ago) by bates
Permutations and update_mm

Revision 140 - Directory Listing
Modified Thu Apr 29 22:54:12 2004 UTC (15 years, 6 months ago) by bates
Change release number

Revision 127 - Directory Listing
Modified Sun Apr 25 18:06:27 2004 UTC (15 years, 7 months ago) by bates
Remove useLast argument

Revision 125 - Directory Listing
Modified Sun Apr 25 11:59:37 2004 UTC (15 years, 7 months ago) by bates
gradients missing when deviance missing

Revision 122 - Directory Listing
Modified Fri Apr 23 22:06:08 2004 UTC (15 years, 7 months ago) by bates
Change ssclme_variances call

Revision 115 - Directory Listing
Modified Wed Apr 21 22:37:28 2004 UTC (15 years, 7 months ago) by bates
updated ssclme_collapse

Revision 114 - Directory Listing
Modified Wed Apr 21 20:45:22 2004 UTC (15 years, 7 months ago) by bates
Added ssclme_collapse

Revision 113 - Directory Listing
Modified Tue Apr 20 17:34:49 2004 UTC (15 years, 7 months ago) by bates
Correction for gradient and EMsteps

Revision 112 - Directory Listing
Modified Tue Apr 20 17:34:18 2004 UTC (15 years, 7 months ago) by bates
New release

Revision 111 - Directory Listing
Modified Tue Apr 20 15:46:04 2004 UTC (15 years, 7 months ago) by bates
Release 0.8-5

Revision 109 - Directory Listing
Modified Mon Apr 19 17:44:39 2004 UTC (15 years, 7 months ago) by bates
Logic error in ssclme_update_mm

Revision 108 - Directory Listing
Modified Mon Apr 19 17:44:22 2004 UTC (15 years, 7 months ago) by bates
Logic error in ssclme_update_mm

Revision 106 - Directory Listing
Modified Mon Apr 19 00:48:02 2004 UTC (15 years, 7 months ago) by bates
More work on gradient (still not correct)

Revision 105 - Directory Listing
Modified Sun Apr 18 22:12:10 2004 UTC (15 years, 7 months ago) by bates
Added gradient, consistent order of parameters

Revision 104 - Directory Listing
Modified Sun Apr 18 19:21:57 2004 UTC (15 years, 7 months ago) by bates
analytic gradient except for unconstrained, multidimensional case

Revision 101 - Directory Listing
Modified Sun Apr 18 14:59:53 2004 UTC (15 years, 7 months ago) by bates
Add gradient calculation

Revision 100 - Directory Listing
Modified Sat Apr 17 17:03:59 2004 UTC (15 years, 7 months ago) by bates
First cut at gradient

Revision 97 - Directory Listing
Modified Sat Apr 17 16:57:42 2004 UTC (15 years, 7 months ago) by bates
Cleanup of header file

Revision 93 - Directory Listing
Modified Fri Apr 16 21:19:40 2004 UTC (15 years, 7 months ago) by bates
New method of choosing between ties

Revision 92 - Directory Listing
Modified Fri Apr 16 21:18:59 2004 UTC (15 years, 7 months ago) by bates
Watch methods and exports

Revision 86 - Directory Listing
Modified Thu Apr 15 21:40:17 2004 UTC (15 years, 7 months ago) by bates
Allow useLast option in sscCrosstab_groupedPerm

Revision 85 - Directory Listing
Modified Thu Apr 15 20:50:57 2004 UTC (15 years, 7 months ago) by bates
Working version of sscCrosstab_groupedPerm but about to do surgery on it

Revision 83 - Directory Listing
Modified Thu Apr 15 02:51:07 2004 UTC (15 years, 7 months ago) by bates
Working version of sscCrosstab_groupedPerm - still needs work

Revision 82 - Directory Listing
Modified Wed Apr 14 23:20:06 2004 UTC (15 years, 7 months ago) by bates
Updates to sscCrosstab_groupedPerm

Revision 80 - Directory Listing
Modified Wed Apr 14 23:01:49 2004 UTC (15 years, 7 months ago) by bates
Release 0.8-4

Revision 79 - Directory Listing
Modified Wed Apr 14 22:55:10 2004 UTC (15 years, 7 months ago) by bates
Documentation updates

Revision 78 - Directory Listing
Modified Wed Apr 14 20:44:38 2004 UTC (15 years, 7 months ago) by bates
New release

Revision 77 - Directory Listing
Modified Wed Apr 14 20:44:19 2004 UTC (15 years, 7 months ago) by bates
New (experimental) groupedPerm

Revision 76 - Directory Listing
Modified Wed Apr 14 20:43:40 2004 UTC (15 years, 7 months ago) by bates
ssclme_EMsteps miscalculation

Revision 75 - Directory Listing
Modified Wed Apr 14 20:43:06 2004 UTC (15 years, 7 months ago) by bates
Fix Makefile.win

Revision 74 - Directory Listing
Modified Wed Apr 14 16:37:24 2004 UTC (15 years, 7 months ago) by bates
Original version of sscCrosstab_groupedPerm is about to be dismembered

Revision 73 - Directory Listing
Modified Tue Apr 13 15:53:38 2004 UTC (15 years, 7 months ago) by bates
R version of fill-reducing permutation

Revision 72 - Directory Listing
Modified Mon Apr 12 22:25:55 2004 UTC (15 years, 7 months ago) by bates
added R version of groupedPerm function, corrected sscCrosstab arguments

Revision 71 - Directory Listing
Modified Mon Apr 12 22:08:52 2004 UTC (15 years, 7 months ago) by bates
Release 0.8-3 to fix Makefile.win

Revision 70 - Directory Listing
Modified Mon Apr 12 12:10:01 2004 UTC (15 years, 7 months ago) by bates
Adding coercions - fixing bugs

Revision 58 - Directory Listing
Modified Tue Apr 6 22:10:05 2004 UTC (15 years, 7 months ago) by bates


Revision 57 - Directory Listing
Modified Tue Apr 6 22:09:52 2004 UTC (15 years, 7 months ago) by bates
Minor change for VarCorr

Revision 55 - Directory Listing
Modified Tue Apr 6 17:24:29 2004 UTC (15 years, 7 months ago) by bates
Moved MixedEffects vignette to lme4 package

Revision 52 - Directory Listing
Modified Tue Apr 6 02:54:14 2004 UTC (15 years, 7 months ago) by bates
Lack of inclusion picked up by -Wall

Revision 51 - Directory Listing
Modified Tue Apr 6 02:37:45 2004 UTC (15 years, 7 months ago) by bates
Release 0.8-2

Revision 50 - Directory Listing
Modified Tue Apr 6 02:27:37 2004 UTC (15 years, 7 months ago) by bates
Removing explicit umfpack code

Revision 49 - Directory Listing
Modified Tue Apr 6 02:26:13 2004 UTC (15 years, 7 months ago) by bates


Revision 48 - Directory Listing
Modified Tue Apr 6 02:25:26 2004 UTC (15 years, 7 months ago) by bates
Cleaning up from R CMD check

Revision 47 - Directory Listing
Modified Tue Apr 6 02:25:00 2004 UTC (15 years, 7 months ago) by bates
Move triplet_to_col from umfpack

Revision 45 - Directory Listing
Modified Mon Apr 5 01:06:55 2004 UTC (15 years, 7 months ago) by bates
Added ssclme_variances

Revision 43 - Directory Listing
Modified Tue Mar 30 23:26:33 2004 UTC (15 years, 7 months ago) by bates
remove unnecessarily complicated C code for coercion (better done in R code)

Revision 42 - Directory Listing
Modified Tue Mar 30 23:25:17 2004 UTC (15 years, 7 months ago) by bates
image method using lattice

Revision 41 - Directory Listing
Modified Tue Mar 30 23:23:53 2004 UTC (15 years, 7 months ago) by bates
Move image method here

Revision 40 - Directory Listing
Modified Tue Mar 30 23:21:34 2004 UTC (15 years, 7 months ago) by bates
Change coersions to R code only

Revision 34 - Directory Listing
Modified Mon Mar 29 01:49:38 2004 UTC (15 years, 7 months ago) by bates
Correct column of b[[i]] in _fitted

Revision 28 - Directory Listing
Modified Sun Mar 28 17:06:05 2004 UTC (15 years, 7 months ago) by bates
Added ssclme_fitted function

Revision 22 - Directory Listing
Modified Sat Mar 27 18:17:00 2004 UTC (15 years, 7 months ago) by bates
Dimensions of b-related values, dimnames

Revision 21 - Directory Listing
Modified Sat Mar 27 00:06:02 2004 UTC (15 years, 8 months ago) by bates
Changing dimensions in bVar and returned value from _ranef

Revision 19 - Directory Listing
Modified Tue Mar 23 23:29:55 2004 UTC (15 years, 8 months ago) by bates
Allow unconstrained coefficients

Revision 18 - Directory Listing
Modified Tue Mar 23 23:29:32 2004 UTC (15 years, 8 months ago) by bates
Allow unconstrained coefficients

Revision 17 - Directory Listing
Modified Tue Mar 23 23:28:51 2004 UTC (15 years, 8 months ago) by bates
Cleaning up

Revision 14 - Directory Listing
Modified Tue Mar 23 13:16:47 2004 UTC (15 years, 8 months ago) by bates
initial version

Revision 13 - Directory Listing
Modified Tue Mar 23 13:16:19 2004 UTC (15 years, 8 months ago) by bates
Add diag slot to tscMatrix

Revision 11 - Directory Listing
Modified Tue Mar 23 13:15:04 2004 UTC (15 years, 8 months ago) by bates
Change name of C function ssclme_EMsteps

Revision 10 - Directory Listing
Added Mon Mar 22 20:20:05 2004 UTC (15 years, 8 months ago) by bates
Initial import

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