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Sticky Revision:

Revision 1059 - Directory Listing
Modified Wed Nov 23 22:20:13 2005 UTC (13 years, 4 months ago) by bates
Matrix multiplication and coersion at higher level

Revision 1056 - Directory Listing
Modified Tue Nov 22 16:40:49 2005 UTC (13 years, 4 months ago) by maechler
require(methods) needed according to the docs

Revision 1053 - Directory Listing
Modified Mon Nov 14 22:21:04 2005 UTC (13 years, 4 months ago) by bates
Release 0.99-2

Revision 1052 - Directory Listing
Modified Mon Nov 14 17:11:13 2005 UTC (13 years, 4 months ago) by maechler
SystemRequirements: GNU make

Revision 1048 - Directory Listing
Modified Sat Nov 12 16:44:04 2005 UTC (13 years, 4 months ago) by bates
Test for both BLAS_LIBS and LAPACK_LIBS

Revision 1047 - Directory Listing
Modified Sat Nov 12 12:35:55 2005 UTC (13 years, 4 months ago) by maechler
revert to original (-r1820)

Revision 1046 - Directory Listing
Modified Sat Nov 12 12:07:53 2005 UTC (13 years, 4 months ago) by maechler
lsame.f needed for z*.f - only if not BLAS_LIBS

Revision 1041 - Directory Listing
Modified Fri Nov 11 21:45:50 2005 UTC (13 years, 4 months ago) by maechler
use $(.)

Revision 1039 - Directory Listing
Modified Fri Nov 11 21:22:49 2005 UTC (13 years, 4 months ago) by bates
Release 0.99-2

Revision 1038 - Directory Listing
Modified Fri Nov 11 21:22:08 2005 UTC (13 years, 4 months ago) by bates
Adding PACKAGE = to .Call

Revision 1037 - Directory Listing
Modified Fri Nov 11 14:57:22 2005 UTC (13 years, 4 months ago) by bates
Adding PACKAGE = to .Call lines

Revision 1033 - Directory Listing
Modified Wed Nov 9 22:39:33 2005 UTC (13 years, 4 months ago) by bates
typo

Revision 1032 - Directory Listing
Modified Wed Nov 9 17:55:53 2005 UTC (13 years, 4 months ago) by maechler
need for "extern" (by Brian)

Revision 1031 - Directory Listing
Modified Wed Nov 9 17:50:06 2005 UTC (13 years, 4 months ago) by maechler
using malloc & free & variable "dofree"

Revision 1030 - Directory Listing
Modified Wed Nov 9 17:48:24 2005 UTC (13 years, 4 months ago) by maechler
Windows "make" extensions (based on Brian`s)

Revision 1029 - Directory Listing
Modified Wed Nov 9 15:26:22 2005 UTC (13 years, 4 months ago) by maechler
use free() to clean up after  as_cholmod_*() since these use malloc() - as in Brian`s patch

Revision 1027 - Directory Listing
Modified Tue Nov 8 23:13:17 2005 UTC (13 years, 4 months ago) by bates
New release

Revision 1026 - Directory Listing
Modified Tue Nov 8 23:12:38 2005 UTC (13 years, 4 months ago) by bates
Moving CHOLMOD User Guide

Revision 1025 - Directory Listing
Modified Tue Nov 8 23:11:59 2005 UTC (13 years, 4 months ago) by bates
Moving CHOLMOD User Guide

Revision 1024 - Directory Listing
Modified Tue Nov 8 23:09:13 2005 UTC (13 years, 4 months ago) by bates
New version of Makefile.win

Revision 1023 - Directory Listing
Modified Tue Nov 8 23:07:36 2005 UTC (13 years, 4 months ago) by bates
Remove entire UFconfig directory

Revision 1022 - Directory Listing
Modified Tue Nov 8 20:49:59 2005 UTC (13 years, 4 months ago) by bates
Modifying CHOLMOD Makefiles and directories

Revision 1021 - Directory Listing
Modified Tue Nov 8 19:40:59 2005 UTC (13 years, 4 months ago) by bates
Removing unused directory

Revision 1020 - Directory Listing
Modified Tue Nov 8 19:40:36 2005 UTC (13 years, 4 months ago) by bates
Removing unused directory

Revision 1019 - Directory Listing
Modified Tue Nov 8 19:28:07 2005 UTC (13 years, 4 months ago) by bates


Revision 1018 - Directory Listing
Modified Tue Nov 8 19:27:47 2005 UTC (13 years, 4 months ago) by bates


Revision 1017 - Directory Listing
Modified Tue Nov 8 19:17:19 2005 UTC (13 years, 4 months ago) by bates


Revision 1016 - Directory Listing
Modified Tue Nov 8 19:13:56 2005 UTC (13 years, 4 months ago) by bates
Removing the test matrix directory

Revision 1015 - Directory Listing
Modified Tue Nov 8 18:21:45 2005 UTC (13 years, 4 months ago) by bates
Moving AMD docs to inst/doc

Revision 1014 - Directory Listing
Modified Tue Nov 8 18:21:28 2005 UTC (13 years, 4 months ago) by bates
Moving AMD docs to inst/doc

Revision 1013 - Directory Listing
Modified Tue Nov 8 13:33:44 2005 UTC (13 years, 4 months ago) by bates
Use Calloc/Free, not malloc/Free

Revision 990 - Directory Listing
Modified Tue Oct 25 22:42:32 2005 UTC (13 years, 5 months ago) by bates
Comment out test on outer because of changes in R-2.3.0

Revision 989 - Directory Listing
Modified Tue Oct 25 17:39:26 2005 UTC (13 years, 5 months ago) by bates
munging the Makefiles

Revision 988 - Directory Listing
Modified Tue Oct 25 17:39:01 2005 UTC (13 years, 5 months ago) by bates
need a drop = FALSE in a subscripting operation

Revision 987 - Directory Listing
Modified Tue Oct 25 17:38:46 2005 UTC (13 years, 5 months ago) by bates
need a drop = FALSE in a subscripting operation

Revision 986 - Directory Listing
Modified Fri Oct 21 19:36:30 2005 UTC (13 years, 5 months ago) by bates
Remove references to mer2 and mltloc.rda which are now in a branch

Revision 984 - Directory Listing
Modified Tue Oct 11 18:08:46 2005 UTC (13 years, 5 months ago) by bates
Tidying up

Revision 983 - Directory Listing
Modified Tue Oct 11 15:19:20 2005 UTC (13 years, 5 months ago) by bates
Remove references to Pattern.[ch]

Revision 982 - Directory Listing
Modified Tue Oct 11 15:18:23 2005 UTC (13 years, 5 months ago) by bates
Remove references to Pattern.[ch]

Revision 981 - Directory Listing
Modified Tue Oct 11 14:12:19 2005 UTC (13 years, 5 months ago) by bates
Evaluate model frame before glm model of fixed effects

Revision 980 - Directory Listing
Modified Tue Oct 11 14:11:44 2005 UTC (13 years, 5 months ago) by bates
Remove Pattern sources that are no longer needed

Revision 979 - Directory Listing
Modified Tue Oct 11 00:02:45 2005 UTC (13 years, 5 months ago) by bates
Added a FIXME - will fix later

Revision 978 - Directory Listing
Modified Mon Oct 10 13:54:09 2005 UTC (13 years, 5 months ago) by bates
More mer2 modifications

Revision 977 - Directory Listing
Modified Fri Oct 7 22:14:47 2005 UTC (13 years, 5 months ago) by bates
mer2_initial

Revision 976 - Directory Listing
Modified Fri Oct 7 20:18:29 2005 UTC (13 years, 5 months ago) by maechler
more examples; update

Revision 975 - Directory Listing
Modified Fri Oct 7 20:18:14 2005 UTC (13 years, 5 months ago) by maechler
comment

Revision 974 - Directory Listing
Modified Fri Oct 7 20:17:46 2005 UTC (13 years, 5 months ago) by maechler
symm. -> pos.def. test:not yet

Revision 973 - Directory Listing
Modified Fri Oct 7 20:15:08 2005 UTC (13 years, 5 months ago) by maechler
isSymmetric() & simulate() updates; sparse subsetting

Revision 972 - Directory Listing
Modified Fri Oct 7 20:13:24 2005 UTC (13 years, 5 months ago) by maechler
comments and more (hidden) as.Matrix utilities

Revision 971 - Directory Listing
Modified Fri Oct 7 15:40:21 2005 UTC (13 years, 5 months ago) by maechler
add BLAS zherk.f because it's not (yet) in R

Revision 970 - Directory Listing
Modified Fri Oct 7 14:20:23 2005 UTC (13 years, 5 months ago) by bates
Added a factorization in mer2_create so the permutation could be applied to Z'X and Z'y

Revision 969 - Directory Listing
Modified Thu Oct 6 23:34:20 2005 UTC (13 years, 5 months ago) by bates
Permutation of Z'X and Z'y in mer2_factor

Revision 968 - Directory Listing
Modified Thu Oct 6 23:33:25 2005 UTC (13 years, 5 months ago) by bates
nrow, not ncol

Revision 967 - Directory Listing
Modified Thu Oct 6 03:07:23 2005 UTC (13 years, 5 months ago) by bates
More updates on lmer - still not quite correct

Revision 966 - Directory Listing
Modified Thu Oct 6 03:06:40 2005 UTC (13 years, 5 months ago) by bates
Routines missing from the lapack module sources

Revision 965 - Directory Listing
Modified Wed Oct 5 16:57:55 2005 UTC (13 years, 5 months ago) by maechler
(comments)

Revision 964 - Directory Listing
Modified Mon Oct 3 20:35:52 2005 UTC (13 years, 5 months ago) by maechler
new and better error mesage when info

Revision 963 - Directory Listing
Modified Mon Oct 3 01:44:56 2005 UTC (13 years, 5 months ago) by bates
Modifications to mer2

Revision 962 - Directory Listing
Modified Mon Oct 3 01:44:14 2005 UTC (13 years, 5 months ago) by bates
Multilocation data from Mark Lyman

Revision 961 - Directory Listing
Modified Sat Oct 1 20:11:51 2005 UTC (13 years, 5 months ago) by maechler
explain difference between logical(crossprod()) and crossprod(logical())

Revision 960 - Directory Listing
Modified Sat Oct 1 20:10:45 2005 UTC (13 years, 5 months ago) by maechler
cosmetic

Revision 959 - Directory Listing
Modified Sat Oct 1 20:10:20 2005 UTC (13 years, 5 months ago) by maechler
dtC -> dgC coercion

Revision 958 - Directory Listing
Modified Sat Oct 1 20:08:51 2005 UTC (13 years, 5 months ago) by maechler
add "self-documenting" argument names

Revision 957 - Directory Listing
Modified Sat Oct 1 20:08:04 2005 UTC (13 years, 5 months ago) by maechler
check return value from cholmod_aat()   {fix seg.fault}

Revision 956 - Directory Listing
Modified Fri Sep 30 17:28:00 2005 UTC (13 years, 5 months ago) by maechler
more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ...

Revision 955 - Directory Listing
Modified Thu Sep 29 19:32:14 2005 UTC (13 years, 5 months ago) by maechler
duh: LIB was not a name

Revision 954 - Directory Listing
Modified Wed Sep 28 19:34:31 2005 UTC (13 years, 5 months ago) by maechler
more "Compare" and some "!" methods; expm() for sparse; updated tests

Revision 953 - Directory Listing
Modified Wed Sep 28 19:31:36 2005 UTC (13 years, 5 months ago) by maechler
move "factors" slot to "Matrix"

Revision 952 - Directory Listing
Modified Wed Sep 28 19:19:19 2005 UTC (13 years, 5 months ago) by maechler
packed_to_full_(double|int) and full_to_packed_*

Revision 951 - Directory Listing
Modified Wed Sep 28 12:42:51 2005 UTC (13 years, 5 months ago) by maechler
use uplo_P() and diag_P() macros instead of *_value() functions

Revision 950 - Directory Listing
Modified Wed Sep 28 12:42:11 2005 UTC (13 years, 5 months ago) by maechler
+ include

Revision 949 - Directory Listing
Modified Wed Sep 28 09:17:08 2005 UTC (13 years, 6 months ago) by maechler
cleanup

Revision 948 - Directory Listing
Modified Wed Sep 28 08:57:56 2005 UTC (13 years, 6 months ago) by maechler
less test *files*

Revision 947 - Directory Listing
Modified Wed Sep 28 08:57:37 2005 UTC (13 years, 6 months ago) by maechler
t(t(m)) == m and more

Revision 946 - Directory Listing
Modified Wed Sep 28 08:56:42 2005 UTC (13 years, 6 months ago) by maechler
some "Summary" methods; some "Compare" group methods; logical dense matrices

Revision 945 - Directory Listing
Modified Wed Sep 28 08:54:28 2005 UTC (13 years, 6 months ago) by maechler
+ logical dense matrices; more coercions

Revision 944 - Directory Listing
Modified Wed Sep 28 08:54:00 2005 UTC (13 years, 6 months ago) by maechler
fix longstanding typo; new dsT*_as_dgT*

Revision 943 - Directory Listing
Modified Wed Sep 28 08:52:22 2005 UTC (13 years, 6 months ago) by maechler
+ uplo_value(), diag_value()

Revision 942 - Directory Listing
Modified Wed Sep 28 08:43:56 2005 UTC (13 years, 6 months ago) by maechler
add Qidentical()

Revision 941 - Directory Listing
Modified Tue Sep 27 13:28:15 2005 UTC (13 years, 6 months ago) by maechler
new

Revision 940 - Directory Listing
Modified Tue Sep 27 00:50:35 2005 UTC (13 years, 6 months ago) by bates
Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

Revision 939 - Directory Listing
Modified Tue Sep 20 17:23:24 2005 UTC (13 years, 6 months ago) by bates
More careful checking for linear mixed model

Revision 938 - Directory Listing
Modified Tue Sep 20 10:16:53 2005 UTC (13 years, 6 months ago) by maechler
less precision in test; slightly more output

Revision 937 - Directory Listing
Modified Tue Sep 20 10:16:13 2005 UTC (13 years, 6 months ago) by maechler
export more non-Primitive group generics

Revision 936 - Directory Listing
Modified Tue Sep 20 10:15:26 2005 UTC (13 years, 6 months ago) by maechler
move setGeneric to AllGeneric

Revision 935 - Directory Listing
Modified Tue Sep 20 10:14:57 2005 UTC (13 years, 6 months ago) by maechler
update TODOs

Revision 934 - Directory Listing
Modified Tue Sep 20 07:38:22 2005 UTC (13 years, 6 months ago) by maechler
+ stricter 'dense' tests

Revision 933 - Directory Listing
Modified Tue Sep 20 07:15:58 2005 UTC (13 years, 6 months ago) by maechler
+ stricter 'lgC' tests

Revision 932 - Directory Listing
Modified Mon Sep 19 23:04:52 2005 UTC (13 years, 6 months ago) by bates
Updated DEPS.mkf and some include files

Revision 931 - Directory Listing
Modified Mon Sep 19 23:04:14 2005 UTC (13 years, 6 months ago) by bates
Modified tests but still get a mysterious result

Revision 930 - Directory Listing
Modified Mon Sep 19 21:29:37 2005 UTC (13 years, 6 months ago) by bates
corrected error message

Revision 929 - Directory Listing
Modified Mon Sep 19 21:29:08 2005 UTC (13 years, 6 months ago) by bates
Added release information

Revision 928 - Directory Listing
Modified Mon Sep 19 21:10:59 2005 UTC (13 years, 6 months ago) by bates
crossprod and tcrossprod for Tsparse

Revision 927 - Directory Listing
Modified Mon Sep 19 21:09:49 2005 UTC (13 years, 6 months ago) by bates
Fixed a thinko picked up by the compiler

Revision 926 - Directory Listing
Modified Mon Sep 19 21:08:53 2005 UTC (13 years, 6 months ago) by bates
Keep -Wall quiet

Revision 925 - Directory Listing
Modified Mon Sep 19 19:01:31 2005 UTC (13 years, 6 months ago) by maechler
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more  "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

Revision 924 - Directory Listing
Modified Mon Sep 19 08:40:29 2005 UTC (13 years, 6 months ago) by maechler
gTM* -> TsparseM*

Revision 923 - Directory Listing
Modified Sun Sep 18 23:41:45 2005 UTC (13 years, 6 months ago) by bates
More progress on incorporating CHOLMOD - still not passing CMD check

Revision 922 - Directory Listing
Modified Sun Sep 18 16:33:54 2005 UTC (13 years, 6 months ago) by bates
Added CHOLMOD-based C functions.  Still need methods defined in R and some error checking

Revision 921 - Directory Listing
Modified Sat Sep 17 14:27:41 2005 UTC (13 years, 6 months ago) by bates
Sparse Matrix methods using CHOLMOD inside ifdef blocks

Revision 920 - Directory Listing
Modified Fri Sep 16 19:36:51 2005 UTC (13 years, 6 months ago) by bates
Some CHOLMOD utilities

Revision 919 - Directory Listing
Modified Fri Sep 16 17:27:06 2005 UTC (13 years, 6 months ago) by maechler
new compressed_non_0_ij()

Revision 918 - Directory Listing
Modified Thu Sep 15 18:08:59 2005 UTC (13 years, 6 months ago) by bates
More for the TODO list

Revision 917 - Directory Listing
Modified Thu Sep 15 18:03:55 2005 UTC (13 years, 6 months ago) by bates
Document changes

Revision 916 - Directory Listing
Modified Thu Sep 15 17:52:59 2005 UTC (13 years, 6 months ago) by bates
Actually needed the Check module

Revision 915 - Directory Listing
Modified Thu Sep 15 17:45:23 2005 UTC (13 years, 6 months ago) by bates
Removing unneeded directories

Revision 914 - Directory Listing
Modified Thu Sep 15 17:41:38 2005 UTC (13 years, 6 months ago) by bates
Removing unneeded directories

Revision 913 - Directory Listing
Modified Thu Sep 15 17:38:18 2005 UTC (13 years, 6 months ago) by bates
No need for xerbla in R package

Revision 912 - Directory Listing
Modified Thu Sep 15 14:53:55 2005 UTC (13 years, 6 months ago) by bates
Adding CHOLMOD and related source packages

Revision 911 - Directory Listing
Modified Fri Sep 9 08:13:06 2005 UTC (13 years, 6 months ago) by maechler
date

Revision 910 - Directory Listing
Modified Fri Sep 9 08:12:58 2005 UTC (13 years, 6 months ago) by maechler
comments & update for Diagonal

Revision 909 - Directory Listing
Modified Fri Sep 9 08:12:31 2005 UTC (13 years, 6 months ago) by maechler
if(require(graph))  around everything

Revision 908 - Directory Listing
Modified Thu Sep 8 15:30:08 2005 UTC (13 years, 6 months ago) by maechler
cbind() / cbind2() methods for R >= 2.2.0

Revision 907 - Directory Listing
Modified Thu Sep 8 15:28:48 2005 UTC (13 years, 6 months ago) by maechler
move testing "tools" functions to ./inst/test-tools.R

Revision 906 - Directory Listing
Modified Thu Sep 8 15:26:45 2005 UTC (13 years, 6 months ago) by maechler
new file testing cbind() - cbind2() dispatch

Revision 905 - Directory Listing
Modified Thu Sep 8 13:23:25 2005 UTC (13 years, 6 months ago) by maechler
centralize the testing tools

Revision 904 - Directory Listing
Modified Wed Sep 7 20:43:59 2005 UTC (13 years, 6 months ago) by bates
Fix readHB according to bug report from Roger Koenker

Revision 903 - Directory Listing
Modified Wed Sep 7 20:43:18 2005 UTC (13 years, 6 months ago) by bates
Remove unnecessary declaration

Revision 902 - Directory Listing
Modified Tue Sep 6 14:07:10 2005 UTC (13 years, 6 months ago) by bates


Revision 901 - Directory Listing
Modified Tue Sep 6 01:26:11 2005 UTC (13 years, 6 months ago) by bates
Add "start" argument to lmer

Revision 900 - Directory Listing
Modified Sat Sep 3 22:00:07 2005 UTC (13 years, 6 months ago) by maechler
up "Version" (for those using svn version)

Revision 899 - Directory Listing
Modified Sat Sep 3 21:59:29 2005 UTC (13 years, 6 months ago) by maechler
(finally) check validity of all Matrix subclasses

Revision 898 - Directory Listing
Modified Sat Sep 3 21:58:37 2005 UTC (13 years, 6 months ago) by maechler
+ prototypes for validity; pMatrix validity

Revision 897 - Directory Listing
Modified Sat Sep 3 21:57:55 2005 UTC (13 years, 6 months ago) by maechler
cosmetic: stay within integers

Revision 896 - Directory Listing
Modified Sat Sep 3 21:57:18 2005 UTC (13 years, 6 months ago) by maechler
more consistency in validation checks

Revision 895 - Directory Listing
Modified Sat Sep 3 21:56:35 2005 UTC (13 years, 6 months ago) by maechler
cosmetic, comment

Revision 894 - Directory Listing
Modified Sat Sep 3 21:55:38 2005 UTC (13 years, 6 months ago) by maechler
comments

Revision 893 - Directory Listing
Modified Sat Sep 3 21:54:10 2005 UTC (13 years, 6 months ago) by maechler
workaround Rdconv and Slot-section-parsing buglets

Revision 892 - Directory Listing
Modified Fri Sep 2 13:40:47 2005 UTC (13 years, 6 months ago) by maechler
move some methods from lgT to lsparse

Revision 891 - Directory Listing
Modified Fri Sep 2 13:39:57 2005 UTC (13 years, 6 months ago) by maechler
new symmetric* and triangular* classes` docu: link to them in other places

Revision 890 - Directory Listing
Modified Thu Sep 1 17:18:08 2005 UTC (13 years, 6 months ago) by maechler
add triangularMatrix_validate and symmetric* to C code and make (re!)use of it - not quite everywhere?

Revision 889 - Directory Listing
Modified Thu Sep 1 14:19:01 2005 UTC (13 years, 6 months ago) by bates
Typo

Revision 888 - Directory Listing
Modified Thu Sep 1 13:46:21 2005 UTC (13 years, 6 months ago) by bates
New simulate method for lmer objects

Revision 887 - Directory Listing
Modified Wed Aug 31 20:31:47 2005 UTC (13 years, 6 months ago) by maechler
uplo &diag slots now go with superclass triangular* or symmetric*

Revision 886 - Directory Listing
Modified Wed Aug 31 17:49:47 2005 UTC (13 years, 6 months ago) by maechler
new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and character indices; new tests; more to do

Revision 885 - Directory Listing
Modified Tue Aug 30 20:54:55 2005 UTC (13 years, 6 months ago) by maechler
fix typo in non-validity text

Revision 884 - Directory Listing
Modified Tue Aug 30 14:38:31 2005 UTC (13 years, 6 months ago) by bates
Update

Revision 883 - Directory Listing
Modified Tue Aug 30 14:38:04 2005 UTC (13 years, 6 months ago) by bates
Doxygen documentation for C function

Revision 882 - Directory Listing
Modified Tue Aug 30 14:37:24 2005 UTC (13 years, 6 months ago) by bates
Corrected a typo

Revision 881 - Directory Listing
Modified Tue Aug 30 14:37:09 2005 UTC (13 years, 6 months ago) by bates


Revision 880 - Directory Listing
Modified Tue Aug 30 14:36:41 2005 UTC (13 years, 6 months ago) by bates
More coercion methods

Revision 879 - Directory Listing
Modified Tue Aug 30 14:35:05 2005 UTC (13 years, 6 months ago) by bates
Added simulate generic and method

Revision 878 - Directory Listing
Modified Sun Aug 28 13:57:39 2005 UTC (13 years, 7 months ago) by bates
Add simulate method for lmer

Revision 877 - Directory Listing
Modified Sun Aug 28 13:57:12 2005 UTC (13 years, 7 months ago) by bates
Correct class names

Revision 876 - Directory Listing
Modified Sat Aug 27 22:50:57 2005 UTC (13 years, 7 months ago) by bates
clean up conversion of graphNEL to sparseMatrix

Revision 875 - Directory Listing
Modified Sat Aug 27 21:29:21 2005 UTC (13 years, 7 months ago) by maechler
indexing (mainly denseMatrix) - using "vector" indices

Revision 874 - Directory Listing
Modified Sat Aug 27 21:27:51 2005 UTC (13 years, 7 months ago) by maechler
prepare graphNEL coercion both for directed and undir.

Revision 873 - Directory Listing
Modified Sat Aug 27 21:26:23 2005 UTC (13 years, 7 months ago) by maechler
some new ones

Revision 872 - Directory Listing
Modified Sat Aug 27 21:26:10 2005 UTC (13 years, 7 months ago) by maechler
new for regr.checking

Revision 871 - Directory Listing
Modified Fri Aug 26 17:26:49 2005 UTC (13 years, 7 months ago) by maechler
Version 0.98-6: "[" methods for dense matrices; first "[<-"; examples

Revision 870 - Directory Listing
Modified Fri Aug 26 17:25:03 2005 UTC (13 years, 7 months ago) by maechler
"Summary" method -> found R-bug

Revision 869 - Directory Listing
Modified Fri Aug 26 17:23:49 2005 UTC (13 years, 7 months ago) by maechler
better explain diag="U" for dtpMatrix

Revision 868 - Directory Listing
Modified Fri Aug 19 17:01:11 2005 UTC (13 years, 7 months ago) by maechler
printing of sparse logicals; "[" reorganization (part 1)

Revision 867 - Directory Listing
Modified Fri Aug 19 16:59:46 2005 UTC (13 years, 7 months ago) by maechler
new "gTMatrix" virtual class

Revision 866 - Directory Listing
Modified Fri Aug 19 16:58:26 2005 UTC (13 years, 7 months ago) by maechler
new lcrc_to_matrix code

Revision 865 - Directory Listing
Modified Fri Aug 19 16:57:49 2005 UTC (13 years, 7 months ago) by maechler
setAs( to "lgTMatrix" )

Revision 864 - Directory Listing
Modified Thu Aug 18 21:36:49 2005 UTC (13 years, 7 months ago) by bates
It's 'warning', not 'warn'

Revision 863 - Directory Listing
Modified Thu Aug 18 21:31:31 2005 UTC (13 years, 7 months ago) by bates
Release 0.98-5

Revision 862 - Directory Listing
Modified Thu Aug 18 21:31:07 2005 UTC (13 years, 7 months ago) by bates
Coercion method for graphNEL to sparseMatrix class

Revision 861 - Directory Listing
Modified Thu Aug 18 21:29:52 2005 UTC (13 years, 7 months ago) by bates
Fix column labels on mcmcsamp for glmer objects

Revision 860 - Directory Listing
Modified Wed Aug 17 05:50:50 2005 UTC (13 years, 7 months ago) by maechler
Version

Revision 859 - Directory Listing
Modified Wed Aug 17 05:37:55 2005 UTC (13 years, 7 months ago) by maechler
add sparse logical matrices

Revision 858 - Directory Listing
Modified Wed Aug 17 05:37:27 2005 UTC (13 years, 7 months ago) by maechler
line wrap; + example

Revision 857 - Directory Listing
Modified Tue Aug 16 22:19:58 2005 UTC (13 years, 7 months ago) by bates
Change method of reading Harwell-Boeing matrix format and change example

Revision 856 - Directory Listing
Modified Tue Aug 16 20:20:13 2005 UTC (13 years, 7 months ago) by maechler
small fixups

Revision 855 - Directory Listing
Modified Tue Aug 16 18:57:36 2005 UTC (13 years, 7 months ago) by maechler
first place to use callNextMethod()

Revision 854 - Directory Listing
Modified Tue Aug 16 18:05:01 2005 UTC (13 years, 7 months ago) by bates
Release 0.98-4

Revision 853 - Directory Listing
Modified Tue Aug 16 18:03:01 2005 UTC (13 years, 7 months ago) by bates
Move documentation for readHB and readMM to man/externalFormats.Rd

Revision 852 - Directory Listing
Modified Tue Aug 16 17:52:16 2005 UTC (13 years, 7 months ago) by bates
Move readHB and readMM to R code and allow the use of connections

Revision 851 - Directory Listing
Modified Tue Aug 16 17:39:38 2005 UTC (13 years, 7 months ago) by maechler
export  dgR*, dsR* & dtR* Matrix - and "fix" stubs

Revision 850 - Directory Listing
Modified Tue Aug 16 17:38:04 2005 UTC (13 years, 7 months ago) by maechler
+ "denseMatrix"

Revision 849 - Directory Listing
Modified Tue Aug 16 17:37:09 2005 UTC (13 years, 7 months ago) by maechler
mv \title

Revision 848 - Directory Listing
Modified Thu Aug 11 07:41:59 2005 UTC (13 years, 7 months ago) by maechler
+"denseMatrix" class; export defined but unused classes

Revision 847 - Directory Listing
Modified Thu Aug 11 06:44:09 2005 UTC (13 years, 7 months ago) by bates
Release 0.98-3

Revision 846 - Directory Listing
Modified Wed Aug 10 22:08:35 2005 UTC (13 years, 7 months ago) by bates
Release 0.98-3

Revision 845 - Directory Listing
Modified Wed Aug 10 18:26:18 2005 UTC (13 years, 7 months ago) by maechler
add "FIXME" example

Revision 844 - Directory Listing
Modified Wed Aug 10 18:25:32 2005 UTC (13 years, 7 months ago) by maechler
kappa(Matrix()) no longer segfaults

Revision 843 - Directory Listing
Modified Wed Aug 10 18:24:18 2005 UTC (13 years, 7 months ago) by maechler
comment

Revision 842 - Directory Listing
Modified Tue Aug 9 14:23:37 2005 UTC (13 years, 7 months ago) by bates
Modify column names for transformed parameters in mcmcsamp

Revision 841 - Directory Listing
Modified Tue Aug 9 14:21:32 2005 UTC (13 years, 7 months ago) by bates
Remove second declaration of IOHBterminate

Revision 840 - Directory Listing
Modified Mon Aug 8 16:16:17 2005 UTC (13 years, 7 months ago) by bates
Avoid problems with trying to write to string constants.

Revision 839 - Directory Listing
Modified Mon Aug 8 14:59:54 2005 UTC (13 years, 7 months ago) by bates
update

Revision 838 - Directory Listing
Modified Mon Aug 8 14:59:38 2005 UTC (13 years, 7 months ago) by bates
writeHarwellBoeing and writeMatrixMarket routines

Revision 837 - Directory Listing
Modified Mon Aug 8 14:58:55 2005 UTC (13 years, 7 months ago) by bates
Simplify plots of examples in mcmcsamp by making them 1000 points only

Revision 836 - Directory Listing
Modified Mon Aug 8 13:37:04 2005 UTC (13 years, 7 months ago) by maechler
added {tolerance} [was not saved at last "commit"]

Revision 835 - Directory Listing
Modified Mon Aug 8 13:33:18 2005 UTC (13 years, 7 months ago) by bates
Add writeHB and writeMM methods and generic

Revision 834 - Directory Listing
Modified Mon Aug 8 08:36:34 2005 UTC (13 years, 7 months ago) by maechler
misc comments/formatting

Revision 833 - Directory Listing
Modified Mon Aug 8 08:35:17 2005 UTC (13 years, 7 months ago) by maechler
fixing to unused Lower/Upper Triangular test functions

Revision 832 - Directory Listing
Modified Mon Aug 8 08:33:55 2005 UTC (13 years, 7 months ago) by maechler
lmer()`s "model = T/F" and control arguments; add comments and "FIXME"s

Revision 831 - Directory Listing
Modified Mon Aug 8 08:24:10 2005 UTC (13 years, 7 months ago) by maechler
note on setGeneric("lmer",*) - match.call() pecularity

Revision 830 - Directory Listing
Modified Mon Aug 8 08:22:44 2005 UTC (13 years, 7 months ago) by maechler
add examples + FIXME note

Revision 829 - Directory Listing
Modified Mon Aug 8 08:21:47 2005 UTC (13 years, 7 months ago) by maechler
re-assign as.matrix() in base (!) -- experimental

Revision 828 - Directory Listing
Modified Sun Aug 7 21:59:32 2005 UTC (13 years, 7 months ago) by bates
Remove OrchardSprays examples

Revision 827 - Directory Listing
Modified Sun Aug 7 21:58:53 2005 UTC (13 years, 7 months ago) by bates
More examples

Revision 826 - Directory Listing
Modified Sun Aug 7 16:28:57 2005 UTC (13 years, 7 months ago) by bates
add examples of external formats

Revision 825 - Directory Listing
Modified Sun Aug 7 15:22:33 2005 UTC (13 years, 7 months ago) by bates
Harwell-Boeing and MatrixMarket formats

Revision 824 - Directory Listing
Modified Sat Aug 6 20:01:51 2005 UTC (13 years, 7 months ago) by bates
Allow mcmcsamp on transformed parameters

Revision 823 - Directory Listing
Modified Sat Jul 30 21:35:38 2005 UTC (13 years, 7 months ago) by maechler
+ tcrossprod() method for simple "matrix" and "numeric"

Revision 822 - Directory Listing
Modified Sat Jul 30 21:34:15 2005 UTC (13 years, 7 months ago) by maechler
get rid of \synopsis{} and document missing args

Revision 820 - Directory Listing
Modified Wed Jul 27 23:07:04 2005 UTC (13 years, 8 months ago) by bates
Version 0.98-1

Revision 818 - Directory Listing
Modified Tue Jul 26 22:46:14 2005 UTC (13 years, 8 months ago) by bates
updates on lmer_MCMCsamp

Revision 816 - Directory Listing
Modified Tue Jul 26 12:36:10 2005 UTC (13 years, 8 months ago) by bates
Working version of lmer_MCMCsamp - may have chisq in wrong place when sampling sigmasqr

Revision 815 - Directory Listing
Modified Sun Jul 24 23:53:40 2005 UTC (13 years, 8 months ago) by bates
Added lmer_MCMCsamp to the C sources

Revision 814 - Directory Listing
Modified Thu Jul 21 23:05:52 2005 UTC (13 years, 8 months ago) by bates
Working version of the glmmMCMC producing an mcmc object

Revision 813 - Directory Listing
Modified Thu Jul 21 16:41:42 2005 UTC (13 years, 8 months ago) by bates
New sampling for glmerMCMC but intermediates are not appropriately PROTECTed

Revision 812 - Directory Listing
Modified Thu Jul 21 14:59:04 2005 UTC (13 years, 8 months ago) by bates
Added an rWishart function, which should later be moved to the stats package

Revision 811 - Directory Listing
Modified Thu Jul 14 15:37:41 2005 UTC (13 years, 8 months ago) by bates
Modifications to glmmMCMC

Revision 810 - Directory Listing
Modified Thu Jul 14 13:48:38 2005 UTC (13 years, 8 months ago) by bates
Modifications to glmmMCMC

Revision 809 - Directory Listing
Modified Tue Jul 12 23:00:50 2005 UTC (13 years, 8 months ago) by bates
Release 0.97-4 with fix suggested by DTL

Revision 808 - Directory Listing
Modified Mon Jul 11 15:05:40 2005 UTC (13 years, 8 months ago) by bates
Release 0.97-3

Revision 807 - Directory Listing
Modified Mon Jul 11 14:51:22 2005 UTC (13 years, 8 months ago) by bates
Release 0.97-3

Revision 806 - Directory Listing
Modified Fri Jul 8 15:38:43 2005 UTC (13 years, 8 months ago) by bates
Preliminary version of glmmMCMC

Revision 805 - Directory Listing
Modified Fri Jul 8 03:47:35 2005 UTC (13 years, 8 months ago) by bates
More work on glmer_ranef_update - still not complete

Revision 804 - Directory Listing
Modified Thu Jul 7 20:05:47 2005 UTC (13 years, 8 months ago) by bates
Preparing for glmmMCMC

Revision 803 - Directory Listing
Modified Thu Jul 7 19:09:49 2005 UTC (13 years, 8 months ago) by murdoch
Get include files from R_HOME/include in Windows

Revision 802 - Directory Listing
Modified Wed Jul 6 23:55:39 2005 UTC (13 years, 8 months ago) by bates
got glmer_fixed_update working

Revision 801 - Directory Listing
Modified Wed Jul 6 16:24:33 2005 UTC (13 years, 8 months ago) by bates
Updates for release 0.97-2

Revision 800 - Directory Listing
Modified Tue Jul 5 00:38:09 2005 UTC (13 years, 8 months ago) by bates
Clean up

Revision 799 - Directory Listing
Modified Tue Jul 5 00:37:34 2005 UTC (13 years, 8 months ago) by bates
Increase default maxIter and calculate nAGQ more carefully

Revision 798 - Directory Listing
Modified Mon Jul 4 15:28:48 2005 UTC (13 years, 8 months ago) by bates
Updates to man pages

Revision 797 - Directory Listing
Modified Mon Jul 4 15:28:22 2005 UTC (13 years, 8 months ago) by bates
Need to print results of tests in a conditional expression

Revision 796 - Directory Listing
Modified Mon Jul 4 14:57:28 2005 UTC (13 years, 8 months ago) by bates
Added utilities vecSum and vecIncrement

Revision 795 - Directory Listing
Modified Mon Jul 4 14:56:57 2005 UTC (13 years, 8 months ago) by bates
Added AGQ for glmer class

Revision 794 - Directory Listing
Modified Mon Jul 4 14:54:33 2005 UTC (13 years, 8 months ago) by bates
New release

Revision 793 - Directory Listing
Modified Mon Jul 4 14:54:13 2005 UTC (13 years, 8 months ago) by bates
Added tests for generalized mixed models

Revision 792 - Directory Listing
Modified Sat Jul 2 20:58:14 2005 UTC (13 years, 8 months ago) by maechler
cosmetic

Revision 791 - Directory Listing
Modified Sat Jul 2 20:57:32 2005 UTC (13 years, 8 months ago) by maechler
at least 1 entry for Doug

Revision 790 - Directory Listing
Modified Sat Jul 2 20:57:08 2005 UTC (13 years, 8 months ago) by maechler
emacs-helping comment

Revision 789 - Directory Listing
Modified Sat Jul 2 20:55:50 2005 UTC (13 years, 8 months ago) by maechler
separate docu for ddenseMatrix class

Revision 788 - Directory Listing
Modified Fri Jul 1 10:19:36 2005 UTC (13 years, 8 months ago) by maechler
add concept for GLMM

Revision 787 - Directory Listing
Modified Thu Jun 30 16:59:12 2005 UTC (13 years, 8 months ago) by bates
Still modifying glmer_devAGQ

Revision 786 - Directory Listing
Modified Tue Jun 28 13:58:41 2005 UTC (13 years, 9 months ago) by bates
Developing AGQ but still not right

Revision 785 - Directory Listing
Modified Sun Jun 26 16:22:56 2005 UTC (13 years, 9 months ago) by bates
Conditional modes now ok for MCMC - still need sampling methods

Revision 784 - Directory Listing
Modified Sun Jun 26 03:42:21 2005 UTC (13 years, 9 months ago) by bates
More work on MCMC (still incomplete)

Revision 783 - Directory Listing
Modified Sun Jun 26 03:41:37 2005 UTC (13 years, 9 months ago) by bates
Reinstate check on number of arguments

Revision 782 - Directory Listing
Modified Fri Jun 24 23:06:33 2005 UTC (13 years, 9 months ago) by bates
Adding MCMC capability (currently incomplete)

Revision 781 - Directory Listing
Modified Fri Jun 24 15:38:43 2005 UTC (13 years, 9 months ago) by bates
Further development on AGQ and MCMC for glmm models

Revision 780 - Directory Listing
Modified Sun Jun 19 14:59:30 2005 UTC (13 years, 9 months ago) by bates
Release 0.96-3

Revision 779 - Directory Listing
Modified Wed Jun 15 15:52:19 2005 UTC (13 years, 9 months ago) by bates
Adding AGQ (but not yet correct)

Revision 778 - Directory Listing
Modified Tue Jun 14 04:05:54 2005 UTC (13 years, 9 months ago) by bates
Non-working version - needs adjustment of deviance by multiplicative factor

Revision 777 - Directory Listing
Modified Tue Jun 14 04:02:57 2005 UTC (13 years, 9 months ago) by bates
release 0.96-2

Revision 776 - Directory Listing
Modified Mon Jun 13 19:45:04 2005 UTC (13 years, 9 months ago) by bates
Setting up for AGQ

Revision 775 - Directory Listing
Modified Mon Jun 13 01:22:28 2005 UTC (13 years, 9 months ago) by bates
Factoring C code in preparation for AGQ

Revision 774 - Directory Listing
Modified Fri Jun 10 18:40:54 2005 UTC (13 years, 9 months ago) by bates
Moving devLaplace calculations to C code

Revision 773 - Directory Listing
Modified Thu Jun 9 18:30:33 2005 UTC (13 years, 9 months ago) by bates
Adding flag to skip fixed-effects terms (for use with generalized linear or nonlinear models)

Revision 772 - Directory Listing
Modified Thu Jun 9 16:57:55 2005 UTC (13 years, 9 months ago) by bates
Prepare for release 0.96-1

Revision 769 - Directory Listing
Modified Wed Jun 8 23:47:45 2005 UTC (13 years, 9 months ago) by bates
Moving lmer to the Matrix package

Revision 768 - Directory Listing
Modified Wed Jun 8 17:19:21 2005 UTC (13 years, 9 months ago) by maechler
re-instantiate old examples / tests since R-devel bug seems gone now

Revision 766 - Directory Listing
Modified Tue Jun 7 23:03:34 2005 UTC (13 years, 9 months ago) by bates
Isolating and cleaning up the mer, lmer, and glmer functions

Revision 765 - Directory Listing
Modified Tue Jun 7 23:03:19 2005 UTC (13 years, 9 months ago) by bates
Keep -Wall quiet

Revision 764 - Directory Listing
Modified Mon Jun 6 16:03:07 2005 UTC (13 years, 9 months ago) by bates
Keep -Wall quiet

Revision 763 - Directory Listing
Modified Mon Jun 6 15:53:08 2005 UTC (13 years, 9 months ago) by bates
New release

Revision 762 - Directory Listing
Modified Mon Jun 6 15:52:23 2005 UTC (13 years, 9 months ago) by bates
Keep -Wall quiet

Revision 761 - Directory Listing
Modified Mon Jun 6 15:51:24 2005 UTC (13 years, 9 months ago) by bates
Use mer objects; Replace REML slot by method slot

Revision 760 - Directory Listing
Modified Mon Jun 6 15:48:13 2005 UTC (13 years, 9 months ago) by bates
Fix matrix multiplication methods

Revision 759 - Directory Listing
Modified Mon Jun 6 15:47:13 2005 UTC (13 years, 9 months ago) by bates
Fix matrix multiplication methods

Revision 758 - Directory Listing
Modified Mon Jun 6 15:46:28 2005 UTC (13 years, 9 months ago) by bates
Fix matrix multiplication methods

Revision 757 - Directory Listing
Modified Mon Jun 6 15:39:04 2005 UTC (13 years, 9 months ago) by bates
Comment out problematic tests

Revision 756 - Directory Listing
Modified Mon Jun 6 15:38:50 2005 UTC (13 years, 9 months ago) by bates
Comment out problematic tests

Revision 753 - Directory Listing
Modified Sun May 29 02:15:35 2005 UTC (13 years, 10 months ago) by bates
Release 0.95-11

Revision 749 - Directory Listing
Modified Fri May 20 03:17:14 2005 UTC (13 years, 10 months ago) by bates
Release 0.95-10

Revision 748 - Directory Listing
Modified Thu May 19 21:29:33 2005 UTC (13 years, 10 months ago) by deepayan
fixed typos

Revision 747 - Directory Listing
Modified Thu May 19 17:43:42 2005 UTC (13 years, 10 months ago) by bates
Incorrect version but I want to transfer it

Revision 746 - Directory Listing
Modified Wed May 18 17:03:17 2005 UTC (13 years, 10 months ago) by bates
Corrected determination of slot sizes for multiple non-nested grouping factors

Revision 745 - Directory Listing
Modified Tue May 17 18:34:27 2005 UTC (13 years, 10 months ago) by bates
Fold bCrosstab.[ch] into lmer.[ch]

Revision 744 - Directory Listing
Modified Tue May 17 17:46:19 2005 UTC (13 years, 10 months ago) by bates
Adding logical sparse matrix methods

Revision 743 - Directory Listing
Modified Tue May 17 17:45:52 2005 UTC (13 years, 10 months ago) by bates
Fold bCrosstab.[ch] into lmer.[ch]

Revision 742 - Directory Listing
Modified Tue May 17 17:45:24 2005 UTC (13 years, 10 months ago) by bates
Fold bCrosstab.[ch] into lmer.[ch]

Revision 741 - Directory Listing
Modified Tue May 17 17:44:02 2005 UTC (13 years, 10 months ago) by bates
collapse some constructions in the code

Revision 740 - Directory Listing
Modified Tue May 17 17:42:35 2005 UTC (13 years, 10 months ago) by bates
Last update before removing these files

Revision 739 - Directory Listing
Modified Tue May 17 17:42:04 2005 UTC (13 years, 10 months ago) by bates
Adding logical sparse matrix methods

Revision 738 - Directory Listing
Modified Tue May 17 17:25:31 2005 UTC (13 years, 10 months ago) by bates
Added Matrix_expand_pointers (callable from R) and moved utility for duplicating slots

Revision 737 - Directory Listing
Modified Tue May 17 17:21:38 2005 UTC (13 years, 10 months ago) by bates
Adding logical sparse matrix methods

Revision 736 - Directory Listing
Modified Tue May 17 17:21:04 2005 UTC (13 years, 10 months ago) by bates
Adding logical sparse matrix methods

Revision 735 - Directory Listing
Modified Tue May 17 17:20:01 2005 UTC (13 years, 10 months ago) by bates
Adding logical sparse matrix methods

Revision 734 - Directory Listing
Modified Tue May 17 17:18:54 2005 UTC (13 years, 10 months ago) by bates
Adding logical sparse matrix methods

Revision 733 - Directory Listing
Modified Tue May 17 17:18:30 2005 UTC (13 years, 10 months ago) by bates
Adding logical sparse matrix methods

Revision 732 - Directory Listing
Modified Tue May 17 17:18:14 2005 UTC (13 years, 10 months ago) by bates
Adding logical sparse matrix methods

Revision 731 - Directory Listing
Modified Tue May 17 17:17:29 2005 UTC (13 years, 10 months ago) by bates
Cosmetic changes

Revision 730 - Directory Listing
Modified Tue May 17 17:16:53 2005 UTC (13 years, 10 months ago) by bates
Adding logical sparse matrix methods

Revision 729 - Directory Listing
Modified Tue May 17 17:16:39 2005 UTC (13 years, 10 months ago) by bates
Adding logical sparse matrix methods

Revision 728 - Directory Listing
Modified Sat May 14 00:21:17 2005 UTC (13 years, 10 months ago) by bates
Preparing for release 0.95-10

Revision 726 - Directory Listing
Modified Thu May 12 14:59:04 2005 UTC (13 years, 10 months ago) by bates
Release 0.95-9

Revision 725 - Directory Listing
Modified Tue May 10 14:50:39 2005 UTC (13 years, 10 months ago) by bates
Release 0.95-8 with bug fix for sparse symmetric solve

Revision 723 - Directory Listing
Modified Tue May 10 01:42:05 2005 UTC (13 years, 10 months ago) by bates
More logical sparse matrix methods

Revision 722 - Directory Listing
Modified Mon May 9 14:29:12 2005 UTC (13 years, 10 months ago) by bates


Revision 720 - Directory Listing
Modified Mon May 9 01:32:44 2005 UTC (13 years, 10 months ago) by bates
Methods for logical general sparse matrices

Revision 718 - Directory Listing
Modified Mon May 9 01:24:35 2005 UTC (13 years, 10 months ago) by bates
Getting ready for a release

Revision 715 - Directory Listing
Modified Fri May 6 23:52:53 2005 UTC (13 years, 10 months ago) by bates
Added colSums and friends for dgeMatrix class

Revision 714 - Directory Listing
Modified Fri May 6 23:52:34 2005 UTC (13 years, 10 months ago) by bates
Added colSums and friends for dgeMatrix class

Revision 712 - Directory Listing
Modified Fri May 6 22:20:59 2005 UTC (13 years, 10 months ago) by bates


Revision 711 - Directory Listing
Modified Thu May 5 04:12:44 2005 UTC (13 years, 10 months ago) by deepayan
Updates related to Laplace approximation

Revision 709 - Directory Listing
Modified Tue May 3 16:08:26 2005 UTC (13 years, 10 months ago) by deepayan
changes related to Laplace approximation, including new function to compute parts of the deviance in C code, which doesn't currently work

Revision 705 - Directory Listing
Modified Fri Apr 29 14:42:39 2005 UTC (13 years, 10 months ago) by deepayan
additions related to the Laplace approximation in glmm lmer models

Revision 703 - Directory Listing
Modified Thu Apr 21 22:00:04 2005 UTC (13 years, 11 months ago) by bates
Replace identical(TRUE, ...) by isTRUE(...)

Revision 702 - Directory Listing
Modified Thu Apr 21 13:00:36 2005 UTC (13 years, 11 months ago) by bates
Moving Doxyfile

Revision 701 - Directory Listing
Modified Wed Apr 20 13:24:21 2005 UTC (13 years, 11 months ago) by bates
Finally remove Nineteen_Dubious_Revisited from svn archive

Revision 700 - Directory Listing
Modified Mon Apr 18 20:21:04 2005 UTC (13 years, 11 months ago) by maechler
-Wall

Revision 699 - Directory Listing
Modified Mon Apr 18 20:20:46 2005 UTC (13 years, 11 months ago) by maechler
comment out "integer" methods: those are now part of "numeric"

Revision 698 - Directory Listing
Modified Mon Apr 18 20:20:04 2005 UTC (13 years, 11 months ago) by maechler
numeric x dgeMatrix : for solve etc; semi-activate the as.Matrix() idea

Revision 697 - Directory Listing
Modified Mon Apr 18 20:18:46 2005 UTC (13 years, 11 months ago) by maechler
numeric x dgeMatrix : for solve etc

Revision 696 - Directory Listing
Modified Mon Apr 18 20:03:58 2005 UTC (13 years, 11 months ago) by maechler
sparse "scalar" arithmetic

Revision 695 - Directory Listing
Modified Mon Apr 18 17:12:14 2005 UTC (13 years, 11 months ago) by bates
Tests for the solve methods

Revision 694 - Directory Listing
Modified Mon Apr 18 17:11:32 2005 UTC (13 years, 11 months ago) by bates
Give a warning, not an error, for detection of exact singularity in the LU decomposition

Revision 693 - Directory Listing
Modified Mon Apr 18 17:02:26 2005 UTC (13 years, 11 months ago) by bates
In R-2.1.0 matrix dispatches before integer so always set storage.mode on objects of class "matrix"

Revision 692 - Directory Listing
Modified Mon Apr 18 14:34:33 2005 UTC (13 years, 11 months ago) by bates
Release 0.95-6

Revision 688 - Directory Listing
Modified Sat Apr 2 13:18:16 2005 UTC (13 years, 11 months ago) by maechler
no need for \ in %*% in error message

Revision 687 - Directory Listing
Modified Fri Apr 1 07:36:09 2005 UTC (13 years, 11 months ago) by maechler
"[" and show() methods for sparse matrices => RFC

Revision 686 - Directory Listing
Modified Thu Mar 31 21:19:35 2005 UTC (13 years, 11 months ago) by bates
Create "fallback" methods for any kind of numeric, dense matrix

Revision 685 - Directory Listing
Modified Thu Mar 31 18:17:28 2005 UTC (13 years, 11 months ago) by bates
Multiplication operations for sparseMatrix and ddenseMatrix

Revision 684 - Directory Listing
Modified Thu Mar 31 17:56:46 2005 UTC (13 years, 11 months ago) by bates
Multiplication operations for sparseMatrix and ddenseMatrix

Revision 683 - Directory Listing
Modified Thu Mar 31 17:10:16 2005 UTC (13 years, 11 months ago) by bates
Moving methods for operations with numeric to the Matrix class and with integer to the dMatrix class

Revision 682 - Directory Listing
Modified Thu Mar 31 08:07:02 2005 UTC (13 years, 11 months ago) by maechler
commit the TRUE case (all.equal difference)

Revision 681 - Directory Listing
Modified Thu Mar 31 00:14:36 2005 UTC (13 years, 11 months ago) by bates
Repaired a thinko in the lmer_fitted function

Revision 680 - Directory Listing
Modified Wed Mar 30 14:43:56 2005 UTC (13 years, 11 months ago) by bates
Prepare for release 0.95-4

Revision 679 - Directory Listing
Modified Wed Mar 30 14:42:36 2005 UTC (13 years, 11 months ago) by bates
Rename expand_column_pointers to expand_cmpPt (expand compressed pointers)

Revision 678 - Directory Listing
Modified Wed Mar 30 14:27:40 2005 UTC (13 years, 11 months ago) by bates
Misread instructions - directory not used

Revision 677 - Directory Listing
Modified Mon Mar 28 14:03:32 2005 UTC (14 years ago) by bates
Added dgRMatrix methods and documentation

Revision 676 - Directory Listing
Modified Sat Mar 26 15:59:18 2005 UTC (14 years ago) by maechler
+ virtual "sparseMatrix" classes

Revision 675 - Directory Listing
Modified Sat Mar 26 11:16:05 2005 UTC (14 years ago) by maechler
export csc_tcrossprod - and add examples & test for tcrossprod()

Revision 666 - Directory Listing
Modified Thu Mar 24 13:50:16 2005 UTC (14 years ago) by bates
Add replace functions to calls to setIs for symmetric to positive definite

Revision 665 - Directory Listing
Modified Thu Mar 24 13:06:09 2005 UTC (14 years ago) by bates
Removing the ssclme and sscCrosstab classes

Revision 664 - Directory Listing
Modified Thu Mar 24 13:00:09 2005 UTC (14 years ago) by maechler
make virtual classes "VIRTUAL"

Revision 663 - Directory Listing
Modified Wed Mar 23 17:36:48 2005 UTC (14 years ago) by bates
Moving all ssclme-related R code to the lme4 package

Revision 662 - Directory Listing
Modified Wed Mar 23 17:34:59 2005 UTC (14 years ago) by bates
Moving all ssclme-related R code to the lme4 package

Revision 661 - Directory Listing
Modified Tue Mar 22 21:02:01 2005 UTC (14 years ago) by maechler
add "obvious" new matrices

Revision 660 - Directory Listing
Modified Thu Mar 17 17:53:43 2005 UTC (14 years ago) by maechler
minor changes; less precision for platform portability

Revision 659 - Directory Listing
Modified Thu Mar 17 17:53:10 2005 UTC (14 years ago) by maechler
cosmetic; examples

Revision 658 - Directory Listing
Modified Thu Mar 17 17:52:06 2005 UTC (14 years ago) by maechler
+ as.matrix() + unname() method

Revision 657 - Directory Listing
Modified Wed Mar 16 16:57:52 2005 UTC (14 years ago) by maechler
more %*% and setAs(); tests too

Revision 656 - Directory Listing
Modified Wed Mar 16 16:55:32 2005 UTC (14 years ago) by maechler
rename s/M.n/M.v/ etc

Revision 655 - Directory Listing
Modified Wed Mar 16 16:37:05 2005 UTC (14 years ago) by maechler
eliminate extraneous declaration for "-Wall"

Revision 654 - Directory Listing
Modified Wed Mar 16 16:18:33 2005 UTC (14 years ago) by bates
Generalize matrix multiplication and solve methods

Revision 653 - Directory Listing
Modified Wed Mar 16 16:17:43 2005 UTC (14 years ago) by bates
include permutation in expand method for LU

Revision 652 - Directory Listing
Modified Wed Mar 16 01:08:36 2005 UTC (14 years ago) by bates
Updates to multiplication and other methods

Revision 651 - Directory Listing
Modified Tue Mar 15 01:54:50 2005 UTC (14 years ago) by bates
Document methods and add links

Revision 650 - Directory Listing
Modified Tue Mar 15 01:53:58 2005 UTC (14 years ago) by bates
Correct the coercion to matrix

Revision 649 - Directory Listing
Modified Tue Mar 15 00:59:38 2005 UTC (14 years ago) by bates
Validate function stubs for pBunchKaufman and pCholesky classes

Revision 648 - Directory Listing
Modified Tue Mar 15 00:58:37 2005 UTC (14 years ago) by bates
Zero the unused triangle in the Cholesky decomposition

Revision 647 - Directory Listing
Modified Tue Mar 15 00:56:35 2005 UTC (14 years ago) by bates
Document methods for dppMatrix class

Revision 646 - Directory Listing
Modified Tue Mar 15 00:52:35 2005 UTC (14 years ago) by bates
'unpack' methods

Revision 645 - Directory Listing
Modified Tue Mar 15 00:51:42 2005 UTC (14 years ago) by bates
Updates

Revision 644 - Directory Listing
Modified Tue Mar 15 00:51:16 2005 UTC (14 years ago) by bates
Update test results

Revision 643 - Directory Listing
Modified Tue Mar 15 00:50:48 2005 UTC (14 years ago) by bates
Adding many methods for the dsyMatrix class

Revision 642 - Directory Listing
Modified Tue Mar 15 00:49:32 2005 UTC (14 years ago) by bates
'unpack' methods

Revision 641 - Directory Listing
Modified Tue Mar 15 00:48:34 2005 UTC (14 years ago) by bates
Clean up the 't' method

Revision 640 - Directory Listing
Modified Tue Mar 15 00:44:13 2005 UTC (14 years ago) by bates
permutation matrix class

Revision 639 - Directory Listing
Modified Tue Mar 15 00:44:02 2005 UTC (14 years ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 638 - Directory Listing
Modified Tue Mar 15 00:43:21 2005 UTC (14 years ago) by bates
permutation matrix class

Revision 637 - Directory Listing
Modified Tue Mar 15 00:41:24 2005 UTC (14 years ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 636 - Directory Listing
Modified Tue Mar 15 00:40:58 2005 UTC (14 years ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 635 - Directory Listing
Modified Tue Mar 15 00:40:26 2005 UTC (14 years ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 634 - Directory Listing
Modified Sun Mar 13 21:01:45 2005 UTC (14 years ago) by maechler
updates

Revision 633 - Directory Listing
Modified Sun Mar 13 21:01:15 2005 UTC (14 years ago) by maechler
comments

Revision 632 - Directory Listing
Modified Sun Mar 13 21:00:53 2005 UTC (14 years ago) by maechler
mv some to new Auxiliaries file (early in alphabetic sorting!)

Revision 631 - Directory Listing
Modified Sun Mar 13 04:34:52 2005 UTC (14 years ago) by bates
Add BunchKaufman factorization

Revision 630 - Directory Listing
Modified Thu Mar 10 22:56:33 2005 UTC (14 years ago) by maechler
update -- note this now fails for R 2.0.1

Revision 629 - Directory Listing
Modified Thu Mar 10 19:00:57 2005 UTC (14 years ago) by bates
Fix dgeMatrix_dtpMatrix_mm and add test

Revision 628 - Directory Listing
Modified Thu Mar 10 17:57:47 2005 UTC (14 years ago) by maechler
more  %*% methods; some dimnames in C (untested); checks extended

Revision 627 - Directory Listing
Modified Mon Mar 7 17:36:38 2005 UTC (14 years ago) by maechler
oops! I believed the outdated docu -- it *IS* an S4 generic, really!

Revision 626 - Directory Listing
Modified Mon Mar 7 17:19:03 2005 UTC (14 years ago) by maechler
cosmetic additions

Revision 622 - Directory Listing
Modified Mon Mar 7 12:45:59 2005 UTC (14 years ago) by bates
Wrong number of args in lmer_update_mm

Revision 621 - Directory Listing
Modified Sat Mar 5 21:23:09 2005 UTC (14 years ago) by maechler
mainly changed \alias{}es for methods

Revision 620 - Directory Listing
Modified Sat Mar 5 21:22:08 2005 UTC (14 years ago) by maechler
new tests

Revision 619 - Directory Listing
Modified Sat Mar 5 21:21:31 2005 UTC (14 years ago) by maechler
comments and cosmetic, setAs(.) first

Revision 618 - Directory Listing
Modified Sat Mar 5 21:20:42 2005 UTC (14 years ago) by maechler
extended show Method, testing for "Matrix"; rather "ddenseMatrix" -> "matrix"

Revision 617 - Directory Listing
Modified Sat Mar 5 21:19:13 2005 UTC (14 years ago) by maechler
+ setAs(*, "matrix")

Revision 616 - Directory Listing
Modified Sat Mar 5 21:17:40 2005 UTC (14 years ago) by maechler
+ 2 crossprod methods

Revision 615 - Directory Listing
Modified Sat Mar 5 21:17:04 2005 UTC (14 years ago) by maechler
L <-> U for transpose

Revision 614 - Directory Listing
Modified Sat Mar 5 21:14:43 2005 UTC (14 years ago) by maechler
L <-> U for transpose

Revision 613 - Directory Listing
Modified Sat Mar 5 21:13:40 2005 UTC (14 years ago) by maechler
+ Matrix_DimnamesSym

Revision 612 - Directory Listing
Modified Fri Mar 4 17:35:12 2005 UTC (14 years ago) by maechler
update & extend tests

Revision 611 - Directory Listing
Modified Fri Mar 4 17:34:45 2005 UTC (14 years ago) by maechler
\alias{.} for the new methods

Revision 610 - Directory Listing
Modified Fri Mar 4 17:34:19 2005 UTC (14 years ago) by maechler
comments only

Revision 609 - Directory Listing
Modified Fri Mar 4 17:34:03 2005 UTC (14 years ago) by maechler
add more %*% methods

Revision 608 - Directory Listing
Modified Fri Mar 4 17:33:29 2005 UTC (14 years ago) by maechler
- move dim, dimnames, dimnames<-  methods to "Matrix" 
- add more %*% methods

Revision 607 - Directory Listing
Modified Fri Mar 4 17:33:03 2005 UTC (14 years ago) by maechler
- move dim, dimnames, dimnames<-  methods from "dgeMatrix" to here
- setAs(* , to = "matrix")

Revision 606 - Directory Listing
Modified Fri Mar 4 17:29:37 2005 UTC (14 years ago) by maechler
add "dMatrix" group methods and doc file

Revision 605 - Directory Listing
Modified Fri Mar 4 17:29:02 2005 UTC (14 years ago) by maechler
do not Calloc()/Free() in "good" case of check_scalar_string()

Revision 604 - Directory Listing
Modified Fri Mar 4 17:27:51 2005 UTC (14 years ago) by maechler
check for integer 'x'

Revision 603 - Directory Listing
Modified Fri Mar 4 12:53:01 2005 UTC (14 years ago) by bates
Define %*% method for dtpMatrix and matrix properly

Revision 602 - Directory Listing
Modified Fri Mar 4 12:48:40 2005 UTC (14 years ago) by bates
Remove references to pdfactor

Revision 599 - Directory Listing
Modified Fri Mar 4 03:49:53 2005 UTC (14 years ago) by bates
Added C function lmer_fitted

Revision 598 - Directory Listing
Modified Fri Mar 4 03:46:22 2005 UTC (14 years ago) by bates
tests for dtpMatrix class

Revision 597 - Directory Listing
Modified Thu Mar 3 19:58:59 2005 UTC (14 years ago) by bates
Methods and coercions for the dtpMatrix class

Revision 596 - Directory Listing
Modified Thu Mar 3 05:18:35 2005 UTC (14 years ago) by bates
Preparing for 0.95-4 release

Revision 595 - Directory Listing
Modified Thu Mar 3 05:18:11 2005 UTC (14 years ago) by bates
Remove pdfactor class

Revision 594 - Directory Listing
Modified Thu Mar 3 05:17:51 2005 UTC (14 years ago) by bates
Remove pdfactor class

Revision 593 - Directory Listing
Modified Thu Mar 3 05:17:32 2005 UTC (14 years ago) by bates
Remove pdfactor class

Revision 592 - Directory Listing
Modified Thu Mar 3 05:16:50 2005 UTC (14 years ago) by bates
Clean up *_validate functions

Revision 591 - Directory Listing
Modified Thu Mar 3 05:16:09 2005 UTC (14 years ago) by bates
C functions for dtpMatrix class

Revision 590 - Directory Listing
Modified Wed Mar 2 19:54:23 2005 UTC (14 years ago) by bates
more coercions

Revision 589 - Directory Listing
Modified Wed Mar 2 19:53:53 2005 UTC (14 years ago) by bates
more coercions

Revision 588 - Directory Listing
Modified Wed Mar 2 18:19:51 2005 UTC (14 years ago) by bates
shorten csc_components_transpose to csc_compTr

Revision 587 - Directory Listing
Modified Wed Mar 2 18:19:15 2005 UTC (14 years ago) by bates
dsTMatrix_as_dsCMatrix

Revision 586 - Directory Listing
Modified Tue Mar 1 14:55:03 2005 UTC (14 years ago) by maechler
more "-Wall" dummy init.s

Revision 585 - Directory Listing
Modified Tue Mar 1 14:54:38 2005 UTC (14 years ago) by maechler
typo in SelectQueue[o]neWay; comment

Revision 584 - Directory Listing
Modified Tue Mar 1 14:53:29 2005 UTC (14 years ago) by maechler
updated via "--force"

Revision 583 - Directory Listing
Modified Tue Mar 1 11:42:12 2005 UTC (14 years ago) by maechler
dgCMatrix: needs explicit "dim" method (should not be needed!)

Revision 582 - Directory Listing
Modified Mon Feb 28 18:15:21 2005 UTC (14 years ago) by bates
Internationalization and localization

Revision 579 - Directory Listing
Modified Sun Feb 27 00:04:16 2005 UTC (14 years, 1 month ago) by maechler
dimnames(), "dimnames() <-", better t(), etc

Revision 578 - Directory Listing
Modified Sat Feb 26 18:25:09 2005 UTC (14 years, 1 month ago) by maechler
update (also a bit of Doug's)

Revision 577 - Directory Listing
Modified Sat Feb 26 18:24:35 2005 UTC (14 years, 1 month ago) by maechler
update

Revision 576 - Directory Listing
Modified Sat Feb 26 18:18:30 2005 UTC (14 years, 1 month ago) by maechler
prevent segfault {but not "nicely"}

Revision 575 - Directory Listing
Modified Sat Feb 26 18:07:35 2005 UTC (14 years, 1 month ago) by maechler
use "(.)" against "-Wall" warning

Revision 574 - Directory Listing
Modified Sat Feb 26 18:06:32 2005 UTC (14 years, 1 month ago) by maechler
cosmetic

Revision 573 - Directory Listing
Modified Sat Feb 26 18:06:08 2005 UTC (14 years, 1 month ago) by maechler
more group methods and testing them

Revision 572 - Directory Listing
Modified Fri Feb 25 14:11:54 2005 UTC (14 years, 1 month ago) by bates
Inlined function declarations moved within the conditional expression

Revision 570 - Directory Listing
Modified Fri Feb 25 13:21:03 2005 UTC (14 years, 1 month ago) by bates
Move ScotsSec to mlmRev package

Revision 569 - Directory Listing
Modified Fri Feb 25 13:20:28 2005 UTC (14 years, 1 month ago) by bates
Release 0.95-2

Revision 565 - Directory Listing
Modified Tue Feb 22 01:15:45 2005 UTC (14 years, 1 month ago) by bates
Clean up documentation errors exposed by doxygen

Revision 564 - Directory Listing
Modified Sat Feb 19 03:25:17 2005 UTC (14 years, 1 month ago) by bates
Fix compiler warnings

Revision 563 - Directory Listing
Modified Sat Feb 19 02:08:36 2005 UTC (14 years, 1 month ago) by bates
Clean up warnings from compiler

Revision 561 - Directory Listing
Modified Fri Feb 18 19:24:43 2005 UTC (14 years, 1 month ago) by bates
Release 0.95-1

Revision 560 - Directory Listing
Modified Fri Feb 18 14:29:53 2005 UTC (14 years, 1 month ago) by bates
Argument list for cscb_trsm

Revision 559 - Directory Listing
Modified Fri Feb 18 14:29:03 2005 UTC (14 years, 1 month ago) by bates
Changes for non-trivial cscb-trsm

Revision 558 - Directory Listing
Modified Thu Feb 17 18:12:34 2005 UTC (14 years, 1 month ago) by bates
coercion method documentation

Revision 557 - Directory Listing
Modified Thu Feb 17 01:18:02 2005 UTC (14 years, 1 month ago) by bates
Coercions and methods for the dsTMatrix class

Revision 556 - Directory Listing
Modified Wed Feb 16 20:49:44 2005 UTC (14 years, 1 month ago) by bates
Non-trivial cscb_ldl case

Revision 555 - Directory Listing
Modified Wed Feb 16 20:49:16 2005 UTC (14 years, 1 month ago) by bates
cosmetic changes - reformating

Revision 554 - Directory Listing
Modified Wed Feb 16 13:43:45 2005 UTC (14 years, 1 month ago) by bates
clean up logic

Revision 553 - Directory Listing
Modified Wed Feb 16 13:43:17 2005 UTC (14 years, 1 month ago) by bates
clean up long lines

Revision 552 - Directory Listing
Modified Tue Feb 15 23:39:40 2005 UTC (14 years, 1 month ago) by bates
triangular, triplet sparse matrices

Revision 551 - Directory Listing
Modified Tue Feb 15 22:28:03 2005 UTC (14 years, 1 month ago) by bates
triangular, triplet sparse matrices

Revision 548 - Directory Listing
Modified Tue Feb 15 22:13:03 2005 UTC (14 years, 1 month ago) by bates
Suppress test that was causing a segfault

Revision 547 - Directory Listing
Modified Tue Feb 15 22:09:25 2005 UTC (14 years, 1 month ago) by bates
Methods and coercions for the dtTMatrix class

Revision 546 - Directory Listing
Modified Tue Feb 15 22:09:12 2005 UTC (14 years, 1 month ago) by bates
Methods and coercions for the dtTMatrix class

Revision 544 - Directory Listing
Modified Mon Feb 14 21:04:03 2005 UTC (14 years, 1 month ago) by bates
Comment out a test that is causing a segfault

Revision 543 - Directory Listing
Modified Sat Feb 12 13:37:46 2005 UTC (14 years, 1 month ago) by bates
Changes for non-nested vector-valued random effects

Revision 542 - Directory Listing
Modified Thu Feb 10 17:30:10 2005 UTC (14 years, 1 month ago) by maechler
"Arith" group methods work!

Revision 541 - Directory Listing
Modified Thu Feb 10 14:36:45 2005 UTC (14 years, 1 month ago) by maechler
oops!

Revision 540 - Directory Listing
Modified Thu Feb 10 14:32:59 2005 UTC (14 years, 1 month ago) by maechler
more "Done"

Revision 539 - Directory Listing
Modified Thu Feb 10 13:53:28 2005 UTC (14 years, 1 month ago) by maechler
update Version (just in case)

Revision 538 - Directory Listing
Modified Thu Feb 10 13:50:27 2005 UTC (14 years, 1 month ago) by maechler
add @Dimnames (-> new "mm")

Revision 537 - Directory Listing
Modified Thu Feb 10 09:45:31 2005 UTC (14 years, 1 month ago) by maechler
new

Revision 536 - Directory Listing
Modified Thu Feb 10 08:15:12 2005 UTC (14 years, 1 month ago) by bates
rearranging utility functions in the C code

Revision 534 - Directory Listing
Modified Tue Feb 8 08:59:31 2005 UTC (14 years, 1 month ago) by maechler
use mkString(); "uplo" and "diag" must be uppercase

Revision 533 - Directory Listing
Modified Tue Feb 8 07:30:59 2005 UTC (14 years, 1 month ago) by maechler
coercion

Revision 532 - Directory Listing
Modified Mon Feb 7 17:23:54 2005 UTC (14 years, 1 month ago) by maechler
use "true" matrix; also "show" inaccuracy

Revision 531 - Directory Listing
Modified Mon Feb 7 11:04:53 2005 UTC (14 years, 1 month ago) by bates
Include the $(SUBSTAMP) target

Revision 530 - Directory Listing
Modified Mon Feb 7 10:58:27 2005 UTC (14 years, 1 month ago) by bates
Fixes from the TODO list

Revision 529 - Directory Listing
Modified Mon Feb 7 10:56:34 2005 UTC (14 years, 1 month ago) by bates
Fixes from the TODO list

Revision 528 - Directory Listing
Modified Mon Feb 7 10:52:50 2005 UTC (14 years, 1 month ago) by bates
Spelling mistake

Revision 527 - Directory Listing
Modified Mon Feb 7 10:52:37 2005 UTC (14 years, 1 month ago) by bates
Spelling mistake

Revision 526 - Directory Listing
Modified Mon Feb 7 10:50:20 2005 UTC (14 years, 1 month ago) by bates
Include a dependence of the LIB target on the OBJS

Revision 525 - Directory Listing
Modified Mon Feb 7 10:49:20 2005 UTC (14 years, 1 month ago) by bates
Force a call to Make lib in the subdirectories whenever the SHLIB
target is built.  Right now this isn't working properly.

Revision 524 - Directory Listing
Modified Mon Feb 7 09:30:58 2005 UTC (14 years, 1 month ago) by maechler
tol was too tight

Revision 523 - Directory Listing
Modified Mon Feb 7 09:25:50 2005 UTC (14 years, 1 month ago) by maechler
stop() for error()

Revision 522 - Directory Listing
Modified Mon Feb 7 09:25:25 2005 UTC (14 years, 1 month ago) by maechler
oops! add library(.)

Revision 521 - Directory Listing
Modified Sat Feb 5 17:04:56 2005 UTC (14 years, 1 month ago) by maechler
small update

Revision 520 - Directory Listing
Modified Sat Feb 5 14:41:29 2005 UTC (14 years, 1 month ago) by maechler
add "surprising formula"

Revision 519 - Directory Listing
Modified Sat Feb 5 14:25:56 2005 UTC (14 years, 1 month ago) by maechler
some matrix exponential tests

Revision 518 - Directory Listing
Modified Sat Feb 5 13:55:11 2005 UTC (14 years, 1 month ago) by maechler
emacs header

Revision 517 - Directory Listing
Modified Sat Feb 5 13:54:37 2005 UTC (14 years, 1 month ago) by maechler
more ( need to talk )

Revision 516 - Directory Listing
Modified Sat Feb 5 13:54:20 2005 UTC (14 years, 1 month ago) by maechler
chk.matrix() and more

Revision 515 - Directory Listing
Modified Sat Feb 5 13:53:55 2005 UTC (14 years, 1 month ago) by maechler
example (and indentation)

Revision 514 - Directory Listing
Modified Fri Feb 4 23:57:12 2005 UTC (14 years, 1 month ago) by maechler
minor cleanup

Revision 513 - Directory Listing
Modified Fri Feb 4 23:46:08 2005 UTC (14 years, 1 month ago) by maechler
require() is not needed; ddense.. for "dsp"; cosmetic

Revision 512 - Directory Listing
Modified Fri Feb 4 23:45:12 2005 UTC (14 years, 1 month ago) by maechler
better show(); using new option "max.print"

Revision 511 - Directory Listing
Modified Fri Feb 4 23:44:00 2005 UTC (14 years, 1 month ago) by maechler
update

Revision 510 - Directory Listing
Modified Fri Feb 4 23:36:17 2005 UTC (14 years, 1 month ago) by maechler
dimnames?

Revision 509 - Directory Listing
Modified Fri Feb 4 23:34:01 2005 UTC (14 years, 1 month ago) by maechler
some new tests, using stopifnot()

Revision 508 - Directory Listing
Modified Fri Feb 4 18:22:28 2005 UTC (14 years, 1 month ago) by maechler
oops! (in example)

Revision 507 - Directory Listing
Modified Fri Feb 4 18:19:29 2005 UTC (14 years, 1 month ago) by maechler
2 typos

Revision 506 - Directory Listing
Modified Fri Feb 4 18:19:08 2005 UTC (14 years, 1 month ago) by maechler
cosmetic

Revision 505 - Directory Listing
Modified Fri Feb 4 18:18:48 2005 UTC (14 years, 1 month ago) by maechler
cosmetic;
call  image() in example

Revision 504 - Directory Listing
Modified Fri Feb 4 18:18:25 2005 UTC (14 years, 1 month ago) by maechler
add examples

Revision 503 - Directory Listing
Modified Fri Feb 4 18:18:06 2005 UTC (14 years, 1 month ago) by maechler
typo

Revision 502 - Directory Listing
Modified Fri Feb 4 18:17:53 2005 UTC (14 years, 1 month ago) by maechler
cosmetic

Revision 501 - Directory Listing
Modified Fri Feb 4 18:17:36 2005 UTC (14 years, 1 month ago) by maechler
update

Revision 500 - Directory Listing
Modified Fri Feb 4 18:17:18 2005 UTC (14 years, 1 month ago) by maechler
typo;
extend example with stopifnot()

Revision 499 - Directory Listing
Modified Fri Feb 4 18:16:32 2005 UTC (14 years, 1 month ago) by maechler
- wrap line
- if(.) style in as.Matrix()

Revision 498 - Directory Listing
Modified Fri Feb 4 18:15:54 2005 UTC (14 years, 1 month ago) by maechler
cosmetic

Revision 497 - Directory Listing
Modified Fri Feb 4 18:15:24 2005 UTC (14 years, 1 month ago) by maechler
+2

Revision 496 - Directory Listing
Modified Fri Feb 4 18:14:08 2005 UTC (14 years, 1 month ago) by maechler
- get rid of two extraneous declarations
- use the SWAP(.) macro {as in other places}

Revision 495 - Directory Listing
Modified Thu Feb 3 18:48:31 2005 UTC (14 years, 1 month ago) by bates
Initial implementation of the Schur generic

Revision 494 - Directory Listing
Modified Thu Feb 3 18:47:41 2005 UTC (14 years, 1 month ago) by bates
Cleanup

Revision 493 - Directory Listing
Modified Thu Feb 3 18:47:20 2005 UTC (14 years, 1 month ago) by bates
Move the make_named function to Mutils as Matrix_make_named

Revision 492 - Directory Listing
Modified Thu Feb 3 14:24:03 2005 UTC (14 years, 1 month ago) by bates
Getting package to pass CMD check

Revision 491 - Directory Listing
Modified Wed Feb 2 19:40:26 2005 UTC (14 years, 1 month ago) by bates
renaming and rearranging classes

Revision 490 - Directory Listing
Modified Wed Feb 2 19:13:42 2005 UTC (14 years, 1 month ago) by bates
renaming and rearranging classes

Revision 489 - Directory Listing
Modified Wed Feb 2 19:12:03 2005 UTC (14 years, 1 month ago) by bates
renaming and rearranging classes

Revision 488 - Directory Listing
Modified Wed Feb 2 19:11:51 2005 UTC (14 years, 1 month ago) by bates
renaming and rearranging classes

Revision 487 - Directory Listing
Modified Wed Feb 2 19:02:36 2005 UTC (14 years, 1 month ago) by bates
renaming and rearranging classes

Revision 486 - Directory Listing
Modified Wed Feb 2 17:41:09 2005 UTC (14 years, 1 month ago) by bates
renaming and rearranging classes

Revision 485 - Directory Listing
Modified Wed Feb 2 17:20:55 2005 UTC (14 years, 1 month ago) by bates
renaming and rearranging classes

Revision 484 - Directory Listing
Modified Wed Feb 2 17:14:07 2005 UTC (14 years, 1 month ago) by bates
renaming and rearranging classes

Revision 483 - Directory Listing
Modified Wed Feb 2 16:11:21 2005 UTC (14 years, 1 month ago) by bates
renaming and rearranging classes

Revision 482 - Directory Listing
Modified Wed Feb 2 15:37:31 2005 UTC (14 years, 1 month ago) by bates
renaming and rearranging classes

Revision 481 - Directory Listing
Modified Wed Feb 2 15:01:50 2005 UTC (14 years, 1 month ago) by bates
Renaming and reorganizing classes

Revision 480 - Directory Listing
Modified Wed Feb 2 14:59:12 2005 UTC (14 years, 1 month ago) by bates
Renaming and reorganizing classes

Revision 479 - Directory Listing
Modified Wed Feb 2 14:52:26 2005 UTC (14 years, 1 month ago) by bates
Renaming and reorganizing classes

Revision 478 - Directory Listing
Modified Wed Feb 2 14:33:51 2005 UTC (14 years, 1 month ago) by bates
Renaming and reorganizing classes

Revision 477 - Directory Listing
Modified Wed Feb 2 14:14:59 2005 UTC (14 years, 1 month ago) by bates
Renaming and reorganizing classes

Revision 476 - Directory Listing
Modified Wed Feb 2 11:51:24 2005 UTC (14 years, 1 month ago) by bates
Change name of slot from factorization to factors

Revision 475 - Directory Listing
Modified Tue Feb 1 14:44:06 2005 UTC (14 years, 1 month ago) by maechler
Martin`s cosmetics

Revision 474 - Directory Listing
Modified Tue Feb 1 14:41:24 2005 UTC (14 years, 1 month ago) by maechler
Hilbert(0)

Revision 473 - Directory Listing
Modified Tue Feb 1 14:41:09 2005 UTC (14 years, 1 month ago) by maechler
more po-tests

Revision 472 - Directory Listing
Modified Mon Jan 31 21:23:39 2005 UTC (14 years, 1 month ago) by maechler
adding

Revision 471 - Directory Listing
Modified Mon Jan 31 21:17:57 2005 UTC (14 years, 1 month ago) by maechler
as.Matrix() shorter; cosmetic

Revision 470 - Directory Listing
Modified Mon Jan 31 21:14:46 2005 UTC (14 years, 1 month ago) by maechler
use *Rout as well

Revision 466 - Directory Listing
Modified Sat Jan 29 14:14:31 2005 UTC (14 years, 1 month ago) by bates
Add an externally accessible entry point to lmer_Crosstab

Revision 465 - Directory Listing
Modified Sat Jan 29 14:14:01 2005 UTC (14 years, 1 month ago) by bates
Add an externally accessible entry point to lmer_Crosstab

Revision 464 - Directory Listing
Modified Sat Jan 29 14:12:53 2005 UTC (14 years, 1 month ago) by bates
Clean up Lind calculation

Revision 463 - Directory Listing
Modified Sat Jan 29 14:11:34 2005 UTC (14 years, 1 month ago) by bates
Make make clean cleaner

Revision 462 - Directory Listing
Modified Sat Jan 29 14:10:36 2005 UTC (14 years, 1 month ago) by bates
Move lmer class to lme4

Revision 461 - Directory Listing
Modified Sat Jan 29 14:09:38 2005 UTC (14 years, 1 month ago) by bates
Add expm function

Revision 460 - Directory Listing
Modified Sat Jan 29 14:08:32 2005 UTC (14 years, 1 month ago) by bates
Preparation for new release

Revision 459 - Directory Listing
Modified Sat Jan 29 14:08:22 2005 UTC (14 years, 1 month ago) by bates
Preparation for new release

Revision 458 - Directory Listing
Modified Sat Jan 29 14:07:34 2005 UTC (14 years, 1 month ago) by bates
A valuable reference

Revision 451 - Directory Listing
Modified Sun Jan 23 10:05:53 2005 UTC (14 years, 2 months ago) by bates
New coercion method for cscBlocked objects

Revision 450 - Directory Listing
Modified Sun Jan 23 10:05:02 2005 UTC (14 years, 2 months ago) by bates
New release

Revision 448 - Directory Listing
Modified Fri Jan 21 21:59:45 2005 UTC (14 years, 2 months ago) by bates
Release 0.8-23

Revision 447 - Directory Listing
Modified Fri Jan 21 12:17:56 2005 UTC (14 years, 2 months ago) by bates
Change char flags to cblas enum types

Revision 445 - Directory Listing
Modified Wed Jan 19 19:06:24 2005 UTC (14 years, 2 months ago) by bates
Off-diagonals from L, not ZZpO

Revision 444 - Directory Listing
Modified Wed Jan 19 19:05:15 2005 UTC (14 years, 2 months ago) by bates
Off-diagonals from L, not ZZpO

Revision 443 - Directory Listing
Modified Wed Jan 19 11:28:00 2005 UTC (14 years, 2 months ago) by bates
Remove references to the Linv slot.  Change to the extended parent
pairs.  Extensive changes in lmer_invert.  These still probably have
errors but this check in is to provide a checkpoint.

Revision 442 - Directory Listing
Modified Wed Jan 19 11:25:39 2005 UTC (14 years, 2 months ago) by bates
Remove any references to Linv.  Rewrite routines to use a solution
from L rather than multiplication by the inverse.  Change calling
sequences to use the Parent array.  Change the parent arrays to
extended parent pairs.

Revision 441 - Directory Listing
Modified Wed Jan 19 11:22:07 2005 UTC (14 years, 2 months ago) by bates
See if use of cblas would be a good idea

Revision 440 - Directory Listing
Modified Wed Jan 19 11:21:28 2005 UTC (14 years, 2 months ago) by bates
Remove Linv slot in lmer class

Revision 439 - Directory Listing
Modified Wed Jan 19 11:20:32 2005 UTC (14 years, 2 months ago) by bates
See if use of cblas would be a good idea

Revision 438 - Directory Listing
Modified Mon Jan 17 12:48:32 2005 UTC (14 years, 2 months ago) by bates
Remove mistaken transpose

Revision 437 - Directory Listing
Modified Mon Jan 17 12:47:29 2005 UTC (14 years, 2 months ago) by bates
Remove Linv references

Revision 436 - Directory Listing
Modified Mon Jan 17 12:46:13 2005 UTC (14 years, 2 months ago) by bates
Add slots to lmer class

Revision 434 - Directory Listing
Modified Thu Jan 13 19:36:12 2005 UTC (14 years, 2 months ago) by bates
Added and modified many functions to do solutions rather than inversions.

Revision 433 - Directory Listing
Modified Thu Jan 13 19:35:19 2005 UTC (14 years, 2 months ago) by bates
Add the bVar slot to the lmer object

Revision 432 - Directory Listing
Modified Thu Jan 13 19:34:37 2005 UTC (14 years, 2 months ago) by bates
Define the AZERO macro

Revision 431 - Directory Listing
Modified Thu Jan 13 19:34:03 2005 UTC (14 years, 2 months ago) by bates
Use the AZERO macro

Revision 430 - Directory Listing
Modified Thu Jan 13 19:32:26 2005 UTC (14 years, 2 months ago) by bates
Add definitions of cscb_trsm and cscb_trcbsm

Revision 429 - Directory Listing
Modified Thu Jan 13 19:31:10 2005 UTC (14 years, 2 months ago) by bates
Many changes with respect to the representation and calculation steps.

Revision 425 - Directory Listing
Modified Wed Jan 5 15:26:34 2005 UTC (14 years, 2 months ago) by bates
decrement when counting down

Revision 424 - Directory Listing
Modified Wed Jan 5 13:50:30 2005 UTC (14 years, 2 months ago) by bates
Minor typos

Revision 422 - Directory Listing
Modified Tue Jan 4 23:45:15 2005 UTC (14 years, 2 months ago) by bates
Check in prior to leaving for Zuerich

Revision 420 - Directory Listing
Modified Mon Jan 3 19:26:58 2005 UTC (14 years, 2 months ago) by bates
Change to the lmer representation

Revision 419 - Directory Listing
Modified Mon Jan 3 19:21:18 2005 UTC (14 years, 2 months ago) by bates
Change to the lmer representation

Revision 418 - Directory Listing
Modified Mon Jan 3 19:16:36 2005 UTC (14 years, 2 months ago) by bates
Change to the lmer representation

Revision 417 - Directory Listing
Modified Mon Jan 3 19:14:22 2005 UTC (14 years, 2 months ago) by bates
Change to the lmer representation

Revision 415 - Directory Listing
Modified Mon Jan 3 19:05:11 2005 UTC (14 years, 2 months ago) by bates
Change to the lmer representation

Revision 412 - Directory Listing
Modified Tue Dec 28 15:06:55 2004 UTC (14 years, 3 months ago) by bates


Revision 410 - Directory Listing
Modified Tue Dec 28 14:51:42 2004 UTC (14 years, 3 months ago) by bates
Working on the lmer classes

Revision 398 - Directory Listing
Modified Thu Dec 16 19:31:11 2004 UTC (14 years, 3 months ago) by bates
New release

Revision 397 - Directory Listing
Modified Thu Dec 16 19:15:32 2004 UTC (14 years, 3 months ago) by bates
Add arguments to ssclme_to_lme

Revision 396 - Directory Listing
Modified Thu Dec 16 19:14:49 2004 UTC (14 years, 3 months ago) by bates
Document new coercion and determinant methods

Revision 392 - Directory Listing
Modified Tue Dec 14 20:01:16 2004 UTC (14 years, 3 months ago) by bates


Revision 391 - Directory Listing
Modified Tue Dec 14 20:00:15 2004 UTC (14 years, 3 months ago) by bates
Add a coercion for tripletMatrix to matrix

Revision 390 - Directory Listing
Modified Tue Dec 14 19:58:55 2004 UTC (14 years, 3 months ago) by bates
Add a coercion for tripletMatrix to matrix

Revision 389 - Directory Listing
Modified Tue Dec 14 19:58:04 2004 UTC (14 years, 3 months ago) by bates
Remove bbCrosstab and references to it

Revision 388 - Directory Listing
Modified Mon Dec 13 16:00:22 2004 UTC (14 years, 3 months ago) by bates
New release

Revision 387 - Directory Listing
Modified Mon Dec 13 16:00:04 2004 UTC (14 years, 3 months ago) by bates
Keep -Wall happy

Revision 386 - Directory Listing
Modified Mon Dec 13 15:59:24 2004 UTC (14 years, 3 months ago) by bates
Fix bug in multivariate/multiple groups case

Revision 379 - Directory Listing
Modified Sat Dec 11 13:48:29 2004 UTC (14 years, 3 months ago) by bates
make -Wall happy

Revision 378 - Directory Listing
Modified Sat Dec 11 13:47:45 2004 UTC (14 years, 3 months ago) by bates
make -Wall happy

Revision 377 - Directory Listing
Modified Sat Dec 11 13:46:42 2004 UTC (14 years, 3 months ago) by bates
make -Wall happy

Revision 376 - Directory Listing
Modified Sat Dec 11 13:44:01 2004 UTC (14 years, 3 months ago) by bates
declaration of R_alloc

Revision 375 - Directory Listing
Modified Sun Dec 5 13:55:48 2004 UTC (14 years, 3 months ago) by bates


Revision 374 - Directory Listing
Modified Sun Dec 5 13:55:19 2004 UTC (14 years, 3 months ago) by bates
renaming bbCrosstab to bCrosstab

Revision 373 - Directory Listing
Modified Sun Dec 5 13:54:32 2004 UTC (14 years, 3 months ago) by bates
Fixed nested scalar r.e., multivariate bug still outstanding

Revision 372 - Directory Listing
Modified Sun Dec 5 13:53:29 2004 UTC (14 years, 3 months ago) by bates
R-specific versions of ldl

Revision 371 - Directory Listing
Modified Sun Dec 5 13:52:25 2004 UTC (14 years, 3 months ago) by bates
R-specific versions of ldl

Revision 370 - Directory Listing
Modified Sun Dec 5 13:52:06 2004 UTC (14 years, 3 months ago) by bates
R-specific versions of ldl

Revision 369 - Directory Listing
Modified Sun Dec 5 13:51:27 2004 UTC (14 years, 3 months ago) by bates
R-specific versions of ldl

Revision 368 - Directory Listing
Modified Sun Dec 5 13:50:54 2004 UTC (14 years, 3 months ago) by bates
R-specific versions of ldl

Revision 367 - Directory Listing
Modified Sun Dec 5 13:50:43 2004 UTC (14 years, 3 months ago) by bates
R-specific versions of ldl

Revision 366 - Directory Listing
Modified Sun Dec 5 13:49:51 2004 UTC (14 years, 3 months ago) by bates
R-specific versions of ldl

Revision 359 - Directory Listing
Modified Sat Nov 27 17:58:23 2004 UTC (14 years, 4 months ago) by bates
Add a call to ldl_numeric to obtain row indices of diagonal blocks of L

Revision 358 - Directory Listing
Modified Sat Nov 27 17:57:19 2004 UTC (14 years, 4 months ago) by bates
separate suboperations from Parent_inverse

Revision 357 - Directory Listing
Modified Sat Nov 27 17:56:13 2004 UTC (14 years, 4 months ago) by bates
silly typo

Revision 356 - Directory Listing
Modified Sat Nov 27 01:45:39 2004 UTC (14 years, 4 months ago) by bates
Add block updates in bCrosstab_convert

Revision 355 - Directory Listing
Modified Sat Nov 27 01:45:01 2004 UTC (14 years, 4 months ago) by bates
Make Parent_inverse visible in include file

Revision 354 - Directory Listing
Modified Sat Nov 27 01:44:15 2004 UTC (14 years, 4 months ago) by bates
Extract dependencies to an include file

Revision 353 - Directory Listing
Modified Sat Nov 27 01:43:15 2004 UTC (14 years, 4 months ago) by bates
Make factor reordering for bCrosstab optional

Revision 352 - Directory Listing
Modified Tue Nov 23 15:41:03 2004 UTC (14 years, 4 months ago) by bates
remove redundant method alias

Revision 351 - Directory Listing
Modified Tue Nov 23 15:40:28 2004 UTC (14 years, 4 months ago) by bates
Move include file to C sources so the .h file can be included without pulling in a bunch of other stuff

Revision 350 - Directory Listing
Modified Tue Nov 23 15:39:45 2004 UTC (14 years, 4 months ago) by bates


Revision 349 - Directory Listing
Modified Tue Nov 23 15:39:23 2004 UTC (14 years, 4 months ago) by bates
Change name of blocked/blocked crosstabulation to blocked crosstabulation

Revision 348 - Directory Listing
Modified Tue Nov 23 15:38:31 2004 UTC (14 years, 4 months ago) by bates
add blocked crosstabulations

Revision 347 - Directory Listing
Modified Tue Nov 23 15:37:58 2004 UTC (14 years, 4 months ago) by bates
add blocked crosstabulations

Revision 346 - Directory Listing
Modified Tue Nov 23 15:37:12 2004 UTC (14 years, 4 months ago) by bates
simple test of crossproduct for valgrind

Revision 345 - Directory Listing
Modified Tue Nov 23 15:35:55 2004 UTC (14 years, 4 months ago) by bates
keep valgrind happy

Revision 344 - Directory Listing
Modified Mon Nov 15 23:29:41 2004 UTC (14 years, 4 months ago) by bates
Add

Revision 343 - Directory Listing
Modified Mon Nov 15 23:29:28 2004 UTC (14 years, 4 months ago) by bates
Fix on uninitialized value

Revision 342 - Directory Listing
Modified Mon Nov 15 13:55:52 2004 UTC (14 years, 4 months ago) by bates
Updates for factorization name and default value

Revision 341 - Directory Listing
Modified Fri Nov 12 21:20:14 2004 UTC (14 years, 4 months ago) by bates
Use Matrix_rcondSym

Revision 340 - Directory Listing
Modified Fri Nov 12 21:19:39 2004 UTC (14 years, 4 months ago) by bates
Add syrk code

Revision 339 - Directory Listing
Modified Fri Nov 12 21:19:19 2004 UTC (14 years, 4 months ago) by bates
Add syrk code

Revision 338 - Directory Listing
Modified Fri Nov 12 21:17:36 2004 UTC (14 years, 4 months ago) by bates
Initialize all slots

Revision 337 - Directory Listing
Modified Fri Nov 12 21:13:59 2004 UTC (14 years, 4 months ago) by bates
Add addition method

Revision 336 - Directory Listing
Modified Fri Nov 12 21:13:40 2004 UTC (14 years, 4 months ago) by bates
Add tcrossprod method

Revision 335 - Directory Listing
Modified Fri Nov 12 21:12:54 2004 UTC (14 years, 4 months ago) by bates
Add cscBlocked class

Revision 334 - Directory Listing
Modified Fri Nov 12 21:11:45 2004 UTC (14 years, 4 months ago) by bates
Add generics

Revision 333 - Directory Listing
Modified Fri Nov 12 21:10:17 2004 UTC (14 years, 4 months ago) by bates
Add classes

Revision 332 - Directory Listing
Modified Fri Nov 12 21:04:36 2004 UTC (14 years, 4 months ago) by bates
initialize all slots in a NEW_OBJECT

Revision 331 - Directory Listing
Modified Fri Nov 12 21:03:24 2004 UTC (14 years, 4 months ago) by bates
remove zeros from sparse matrix

Revision 330 - Directory Listing
Modified Fri Nov 12 21:02:51 2004 UTC (14 years, 4 months ago) by bates
update methods

Revision 329 - Directory Listing
Modified Fri Nov 12 21:01:19 2004 UTC (14 years, 4 months ago) by bates
Keep symbols and filenames consistent

Revision 328 - Directory Listing
Modified Sat Nov 6 18:05:00 2004 UTC (14 years, 4 months ago) by bates
Keep Makefile.win in sync with Makefile

Revision 327 - Directory Listing
Modified Sat Nov 6 18:04:31 2004 UTC (14 years, 4 months ago) by bates
New release

Revision 326 - Directory Listing
Modified Sat Nov 6 18:03:14 2004 UTC (14 years, 4 months ago) by bates
Add blocked/blocked cross-tabulation class

Revision 325 - Directory Listing
Modified Sat Nov 6 18:03:00 2004 UTC (14 years, 4 months ago) by bates
Add blocked/blocked cross-tabulation class

Revision 324 - Directory Listing
Modified Sat Nov 6 18:02:01 2004 UTC (14 years, 4 months ago) by bates
Cosmetic changes

Revision 311 - Directory Listing
Modified Wed Oct 27 21:41:02 2004 UTC (14 years, 5 months ago) by bates
Keep -Wall happy

Revision 310 - Directory Listing
Modified Wed Oct 27 21:40:08 2004 UTC (14 years, 5 months ago) by bates
add a blas-like routine

Revision 309 - Directory Listing
Modified Wed Oct 27 21:40:02 2004 UTC (14 years, 5 months ago) by bates
add a blas-like routine

Revision 308 - Directory Listing
Modified Wed Oct 27 21:39:44 2004 UTC (14 years, 5 months ago) by bates
cosmetic changes

Revision 307 - Directory Listing
Modified Wed Oct 27 21:38:58 2004 UTC (14 years, 5 months ago) by bates
Changes for check on Debian dgesdd

Revision 306 - Directory Listing
Modified Wed Oct 27 21:38:33 2004 UTC (14 years, 5 months ago) by bates
Changes for check on Debian dgesdd

Revision 305 - Directory Listing
Modified Wed Oct 27 21:36:19 2004 UTC (14 years, 5 months ago) by bates
updates and downdates

Revision 304 - Directory Listing
Modified Wed Oct 27 21:35:13 2004 UTC (14 years, 5 months ago) by bates
lmeRep_invert now applies to multiple, nested grouping factors

Revision 303 - Directory Listing
Modified Wed Oct 27 21:33:03 2004 UTC (14 years, 5 months ago) by bates


Revision 302 - Directory Listing
Modified Wed Oct 27 21:32:37 2004 UTC (14 years, 5 months ago) by bates
Remove PACKAGE="Matrix" in .Call

Revision 301 - Directory Listing
Modified Sun Oct 17 05:06:04 2004 UTC (14 years, 5 months ago) by bates
transfer to another computer

Revision 300 - Directory Listing
Modified Tue Oct 12 15:44:15 2004 UTC (14 years, 5 months ago) by bates
Adding lmeRep_L_sm and support routines

Revision 299 - Directory Listing
Modified Fri Oct 8 14:48:06 2004 UTC (14 years, 5 months ago) by bates
Only positions, not counts, from crossproduct

Revision 298 - Directory Listing
Modified Fri Oct 8 13:47:20 2004 UTC (14 years, 5 months ago) by bates
added validate functions

Revision 297 - Directory Listing
Modified Mon Oct 4 17:13:42 2004 UTC (14 years, 5 months ago) by bates
Add registration of .Call functions

Revision 296 - Directory Listing
Modified Mon Oct 4 17:13:29 2004 UTC (14 years, 5 months ago) by bates
Add registration of .Call functions

Revision 291 - Directory Listing
Modified Sun Oct 3 21:51:33 2004 UTC (14 years, 5 months ago) by bates
Release 0.8-15

Revision 290 - Directory Listing
Modified Sat Oct 2 19:22:24 2004 UTC (14 years, 5 months ago) by deepayan
fixed minor bug in panel function

Revision 283 - Directory Listing
Modified Sat Oct 2 17:05:34 2004 UTC (14 years, 5 months ago) by bates
check for lattice package in image methods

Revision 282 - Directory Listing
Modified Sat Oct 2 15:03:47 2004 UTC (14 years, 5 months ago) by bates
Bug fixes in 0.8-14

Revision 281 - Directory Listing
Modified Sat Oct 2 15:03:09 2004 UTC (14 years, 5 months ago) by bates
Document cscBlocked class

Revision 280 - Directory Listing
Modified Mon Sep 13 12:32:23 2004 UTC (14 years, 6 months ago) by bates
minor format change

Revision 279 - Directory Listing
Modified Sat Sep 11 14:40:25 2004 UTC (14 years, 6 months ago) by deepayan
fixed image method

Revision 275 - Directory Listing
Modified Fri Sep 3 18:55:14 2004 UTC (14 years, 6 months ago) by bates
New storage format - currently works for single grouping factor

Revision 274 - Directory Listing
Modified Thu Sep 2 23:14:51 2004 UTC (14 years, 6 months ago) by bates
Interim version of lmeRep - not yet complete

Revision 273 - Directory Listing
Modified Thu Sep 2 23:14:16 2004 UTC (14 years, 6 months ago) by bates
Add cscBlocked

Revision 272 - Directory Listing
Modified Thu Sep 2 23:14:00 2004 UTC (14 years, 6 months ago) by bates
Add cscBlocked, tweak lmeRep

Revision 271 - Directory Listing
Modified Thu Sep 2 23:12:30 2004 UTC (14 years, 6 months ago) by bates
Prepare for new release

Revision 268 - Directory Listing
Modified Tue Aug 31 19:13:33 2004 UTC (14 years, 6 months ago) by bates
New version

Revision 264 - Directory Listing
Modified Mon Aug 30 13:24:53 2004 UTC (14 years, 6 months ago) by bates
Initial lmeRep_update_mm modifications for multiple grouping factors

Revision 263 - Directory Listing
Modified Thu Aug 26 16:01:35 2004 UTC (14 years, 7 months ago) by bates
extending lmeRep to multiple nested grouping factors

Revision 258 - Directory Listing
Modified Tue Aug 24 14:22:13 2004 UTC (14 years, 7 months ago) by bates
Preparing for a new release

Revision 257 - Directory Listing
Modified Tue Aug 24 02:08:08 2004 UTC (14 years, 7 months ago) by bates
Remove taucs, add lmeRep, new release

Revision 255 - Directory Listing
Modified Fri Aug 20 16:27:15 2004 UTC (14 years, 7 months ago) by bates
Add the lmeRep class

Revision 254 - Directory Listing
Modified Thu Aug 19 15:20:27 2004 UTC (14 years, 7 months ago) by deepayan
fixed problem in image method when not all rows and columns had at least one entry

Revision 250 - Directory Listing
Modified Tue Aug 17 16:50:27 2004 UTC (14 years, 7 months ago) by bates
cleanup in EMsteps_verbose_print

Revision 247 - Directory Listing
Modified Mon Jul 12 17:41:57 2004 UTC (14 years, 8 months ago) by bates
Combine ssclme_coef and ssclme_coefUnc, ssclme_coefGets and ssclme_coefGetsUnc.  Reorganize gradient code in preparation for Hessian calculations.

Revision 245 - Directory Listing
Modified Mon Jul 12 12:46:54 2004 UTC (14 years, 8 months ago) by bates
Remove warnings, new release, change gradient calculation method

Revision 241 - Directory Listing
Modified Wed Jul 7 18:23:11 2004 UTC (14 years, 8 months ago) by bates
Remove pdMat classes

Revision 238 - Directory Listing
Modified Fri Jul 2 14:36:08 2004 UTC (14 years, 8 months ago) by bates
Updated Hessian method to symmetrize the result

Revision 237 - Directory Listing
Modified Thu Jul 1 03:20:33 2004 UTC (14 years, 8 months ago) by bates
Added stub of a Hessian generic and methods.

Revision 229 - Directory Listing
Modified Tue Jun 15 21:37:15 2004 UTC (14 years, 9 months ago) by bates
Escape % characters in .Rd files

Revision 213 - Directory Listing
Modified Mon Jun 7 19:32:00 2004 UTC (14 years, 9 months ago) by bates
Ready for next release

Revision 209 - Directory Listing
Modified Thu Jun 3 18:22:56 2004 UTC (14 years, 9 months ago) by bates
Combine the two ldl_symbolic routines

Revision 205 - Directory Listing
Modified Tue Jun 1 21:36:47 2004 UTC (14 years, 9 months ago) by bates
Prepare for next release

Revision 202 - Directory Listing
Modified Tue Jun 1 19:38:39 2004 UTC (14 years, 9 months ago) by bates
Be more careful in calls to require

Revision 190 - Directory Listing
Modified Mon May 31 19:52:33 2004 UTC (14 years, 9 months ago) by bates
updated automatically

Revision 189 - Directory Listing
Modified Mon May 31 19:03:51 2004 UTC (14 years, 9 months ago) by bates
Doxygen configuration file

Revision 188 - Directory Listing
Modified Mon May 31 18:50:01 2004 UTC (14 years, 9 months ago) by bates
Moving Doxyfile to the Matrix package

Revision 185 - Directory Listing
Modified Sun May 30 22:46:01 2004 UTC (14 years, 9 months ago) by bates
Adding garbage collection to timings

Revision 184 - Directory Listing
Modified Sun May 30 22:38:37 2004 UTC (14 years, 9 months ago) by bates
Experiments with projecting

Revision 176 - Directory Listing
Modified Fri May 28 13:23:44 2004 UTC (14 years, 10 months ago) by bates
Adding documentation - cleaning up code

Revision 174 - Directory Listing
Modified Wed May 19 16:45:00 2004 UTC (14 years, 10 months ago) by bates
remove unused variable

Revision 168 - Directory Listing
Modified Wed May 19 16:18:48 2004 UTC (14 years, 10 months ago) by bates
Multiple factors with some ni > 1

Revision 166 - Directory Listing
Modified Sat May 15 12:59:43 2004 UTC (14 years, 10 months ago) by bates
Accurate EM iteration count

Revision 164 - Directory Listing
Modified Fri May 14 21:00:04 2004 UTC (14 years, 10 months ago) by bates
Moving utilities to Matrix package

Revision 159 - Directory Listing
Modified Sun May 9 22:06:53 2004 UTC (14 years, 10 months ago) by bates
Remove storage of L-inverse

Revision 158 - Directory Listing
Modified Sun May 9 17:06:12 2004 UTC (14 years, 10 months ago) by bates
maxLI=0 option works

Revision 157 - Directory Listing
Modified Sun May 9 14:26:36 2004 UTC (14 years, 10 months ago) by bates
More attempts at the bVar calculation

Revision 153 - Directory Listing
Modified Fri May 7 19:35:35 2004 UTC (14 years, 10 months ago) by bates
Add routines to project and ldl_symbolic the ctab

Revision 150 - Directory Listing
Modified Tue May 4 22:52:19 2004 UTC (14 years, 10 months ago) by bates
Confused conflicts in checkins

Revision 149 - Directory Listing
Modified Tue May 4 22:30:39 2004 UTC (14 years, 10 months ago) by bates
Previous to changing permutation method

Revision 148 - Directory Listing
Modified Mon May 3 12:49:17 2004 UTC (14 years, 10 months ago) by bates
Rearranging code to isolate Metis includes

Revision 146 - Directory Listing
Modified Sat May 1 20:27:04 2004 UTC (14 years, 10 months ago) by bates
Yet another permutation calculation method

Revision 143 - Directory Listing
Modified Fri Apr 30 20:33:01 2004 UTC (14 years, 10 months ago) by bates
Permutations and update_mm

Revision 140 - Directory Listing
Modified Thu Apr 29 22:54:12 2004 UTC (14 years, 10 months ago) by bates
Change release number

Revision 127 - Directory Listing
Modified Sun Apr 25 18:06:27 2004 UTC (14 years, 11 months ago) by bates
Remove useLast argument

Revision 125 - Directory Listing
Modified Sun Apr 25 11:59:37 2004 UTC (14 years, 11 months ago) by bates
gradients missing when deviance missing

Revision 122 - Directory Listing
Modified Fri Apr 23 22:06:08 2004 UTC (14 years, 11 months ago) by bates
Change ssclme_variances call

Revision 115 - Directory Listing
Modified Wed Apr 21 22:37:28 2004 UTC (14 years, 11 months ago) by bates
updated ssclme_collapse

Revision 114 - Directory Listing
Modified Wed Apr 21 20:45:22 2004 UTC (14 years, 11 months ago) by bates
Added ssclme_collapse

Revision 113 - Directory Listing
Modified Tue Apr 20 17:34:49 2004 UTC (14 years, 11 months ago) by bates
Correction for gradient and EMsteps

Revision 112 - Directory Listing
Modified Tue Apr 20 17:34:18 2004 UTC (14 years, 11 months ago) by bates
New release

Revision 111 - Directory Listing
Modified Tue Apr 20 15:46:04 2004 UTC (14 years, 11 months ago) by bates
Release 0.8-5

Revision 109 - Directory Listing
Modified Mon Apr 19 17:44:39 2004 UTC (14 years, 11 months ago) by bates
Logic error in ssclme_update_mm

Revision 108 - Directory Listing
Modified Mon Apr 19 17:44:22 2004 UTC (14 years, 11 months ago) by bates
Logic error in ssclme_update_mm

Revision 106 - Directory Listing
Modified Mon Apr 19 00:48:02 2004 UTC (14 years, 11 months ago) by bates
More work on gradient (still not correct)

Revision 105 - Directory Listing
Modified Sun Apr 18 22:12:10 2004 UTC (14 years, 11 months ago) by bates
Added gradient, consistent order of parameters

Revision 104 - Directory Listing
Modified Sun Apr 18 19:21:57 2004 UTC (14 years, 11 months ago) by bates
analytic gradient except for unconstrained, multidimensional case

Revision 101 - Directory Listing
Modified Sun Apr 18 14:59:53 2004 UTC (14 years, 11 months ago) by bates
Add gradient calculation

Revision 100 - Directory Listing
Modified Sat Apr 17 17:03:59 2004 UTC (14 years, 11 months ago) by bates
First cut at gradient

Revision 97 - Directory Listing
Modified Sat Apr 17 16:57:42 2004 UTC (14 years, 11 months ago) by bates
Cleanup of header file

Revision 93 - Directory Listing
Modified Fri Apr 16 21:19:40 2004 UTC (14 years, 11 months ago) by bates
New method of choosing between ties

Revision 92 - Directory Listing
Modified Fri Apr 16 21:18:59 2004 UTC (14 years, 11 months ago) by bates
Watch methods and exports

Revision 86 - Directory Listing
Modified Thu Apr 15 21:40:17 2004 UTC (14 years, 11 months ago) by bates
Allow useLast option in sscCrosstab_groupedPerm

Revision 85 - Directory Listing
Modified Thu Apr 15 20:50:57 2004 UTC (14 years, 11 months ago) by bates
Working version of sscCrosstab_groupedPerm but about to do surgery on it

Revision 83 - Directory Listing
Modified Thu Apr 15 02:51:07 2004 UTC (14 years, 11 months ago) by bates
Working version of sscCrosstab_groupedPerm - still needs work

Revision 82 - Directory Listing
Modified Wed Apr 14 23:20:06 2004 UTC (14 years, 11 months ago) by bates
Updates to sscCrosstab_groupedPerm

Revision 80 - Directory Listing
Modified Wed Apr 14 23:01:49 2004 UTC (14 years, 11 months ago) by bates
Release 0.8-4

Revision 79 - Directory Listing
Modified Wed Apr 14 22:55:10 2004 UTC (14 years, 11 months ago) by bates
Documentation updates

Revision 78 - Directory Listing
Modified Wed Apr 14 20:44:38 2004 UTC (14 years, 11 months ago) by bates
New release

Revision 77 - Directory Listing
Modified Wed Apr 14 20:44:19 2004 UTC (14 years, 11 months ago) by bates
New (experimental) groupedPerm

Revision 76 - Directory Listing
Modified Wed Apr 14 20:43:40 2004 UTC (14 years, 11 months ago) by bates
ssclme_EMsteps miscalculation

Revision 75 - Directory Listing
Modified Wed Apr 14 20:43:06 2004 UTC (14 years, 11 months ago) by bates
Fix Makefile.win

Revision 74 - Directory Listing
Modified Wed Apr 14 16:37:24 2004 UTC (14 years, 11 months ago) by bates
Original version of sscCrosstab_groupedPerm is about to be dismembered

Revision 73 - Directory Listing
Modified Tue Apr 13 15:53:38 2004 UTC (14 years, 11 months ago) by bates
R version of fill-reducing permutation

Revision 72 - Directory Listing
Modified Mon Apr 12 22:25:55 2004 UTC (14 years, 11 months ago) by bates
added R version of groupedPerm function, corrected sscCrosstab arguments

Revision 71 - Directory Listing
Modified Mon Apr 12 22:08:52 2004 UTC (14 years, 11 months ago) by bates
Release 0.8-3 to fix Makefile.win

Revision 70 - Directory Listing
Modified Mon Apr 12 12:10:01 2004 UTC (14 years, 11 months ago) by bates
Adding coercions - fixing bugs

Revision 58 - Directory Listing
Modified Tue Apr 6 22:10:05 2004 UTC (14 years, 11 months ago) by bates


Revision 57 - Directory Listing
Modified Tue Apr 6 22:09:52 2004 UTC (14 years, 11 months ago) by bates
Minor change for VarCorr

Revision 55 - Directory Listing
Modified Tue Apr 6 17:24:29 2004 UTC (14 years, 11 months ago) by bates
Moved MixedEffects vignette to lme4 package

Revision 52 - Directory Listing
Modified Tue Apr 6 02:54:14 2004 UTC (14 years, 11 months ago) by bates
Lack of inclusion picked up by -Wall

Revision 51 - Directory Listing
Modified Tue Apr 6 02:37:45 2004 UTC (14 years, 11 months ago) by bates
Release 0.8-2

Revision 50 - Directory Listing
Modified Tue Apr 6 02:27:37 2004 UTC (14 years, 11 months ago) by bates
Removing explicit umfpack code

Revision 49 - Directory Listing
Modified Tue Apr 6 02:26:13 2004 UTC (14 years, 11 months ago) by bates


Revision 48 - Directory Listing
Modified Tue Apr 6 02:25:26 2004 UTC (14 years, 11 months ago) by bates
Cleaning up from R CMD check

Revision 47 - Directory Listing
Modified Tue Apr 6 02:25:00 2004 UTC (14 years, 11 months ago) by bates
Move triplet_to_col from umfpack

Revision 45 - Directory Listing
Modified Mon Apr 5 01:06:55 2004 UTC (14 years, 11 months ago) by bates
Added ssclme_variances

Revision 43 - Directory Listing
Modified Tue Mar 30 23:26:33 2004 UTC (14 years, 11 months ago) by bates
remove unnecessarily complicated C code for coercion (better done in R code)

Revision 42 - Directory Listing
Modified Tue Mar 30 23:25:17 2004 UTC (14 years, 11 months ago) by bates
image method using lattice

Revision 41 - Directory Listing
Modified Tue Mar 30 23:23:53 2004 UTC (14 years, 11 months ago) by bates
Move image method here

Revision 40 - Directory Listing
Modified Tue Mar 30 23:21:34 2004 UTC (14 years, 11 months ago) by bates
Change coersions to R code only

Revision 34 - Directory Listing
Modified Mon Mar 29 01:49:38 2004 UTC (15 years ago) by bates
Correct column of b[[i]] in _fitted

Revision 28 - Directory Listing
Modified Sun Mar 28 17:06:05 2004 UTC (15 years ago) by bates
Added ssclme_fitted function

Revision 22 - Directory Listing
Modified Sat Mar 27 18:17:00 2004 UTC (15 years ago) by bates
Dimensions of b-related values, dimnames

Revision 21 - Directory Listing
Modified Sat Mar 27 00:06:02 2004 UTC (15 years ago) by bates
Changing dimensions in bVar and returned value from _ranef

Revision 19 - Directory Listing
Modified Tue Mar 23 23:29:55 2004 UTC (15 years ago) by bates
Allow unconstrained coefficients

Revision 18 - Directory Listing
Modified Tue Mar 23 23:29:32 2004 UTC (15 years ago) by bates
Allow unconstrained coefficients

Revision 17 - Directory Listing
Modified Tue Mar 23 23:28:51 2004 UTC (15 years ago) by bates
Cleaning up

Revision 14 - Directory Listing
Modified Tue Mar 23 13:16:47 2004 UTC (15 years ago) by bates
initial version

Revision 13 - Directory Listing
Modified Tue Mar 23 13:16:19 2004 UTC (15 years ago) by bates
Add diag slot to tscMatrix

Revision 11 - Directory Listing
Modified Tue Mar 23 13:15:04 2004 UTC (15 years ago) by bates
Change name of C function ssclme_EMsteps

Revision 10 - Directory Listing
Added Mon Mar 22 20:20:05 2004 UTC (15 years ago) by bates
Initial import

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