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Sticky Revision:

Revision 2088 - Directory Listing
Modified Sat Aug 12 18:26:00 2017 UTC (3 months, 1 week ago) by jeanlobry
increasing version number smothly

Revision 2078 - Directory Listing
Modified Tue Aug 1 09:25:54 2017 UTC (3 months, 2 weeks ago) by jeanlobry
to force a new build

Revision 2076 - Directory Listing
Modified Tue Aug 1 01:21:41 2017 UTC (3 months, 2 weeks ago) by jeanlobry
with a period at the end of the description field

Revision 2075 - Directory Listing
Modified Mon Jul 31 10:55:15 2017 UTC (3 months, 2 weeks ago) by jeanlobry
making a sentence

Revision 2073 - Directory Listing
Modified Mon Jul 31 06:54:48 2017 UTC (3 months, 2 weeks ago) by jeanlobry
incrementing version number

Revision 2072 - Directory Listing
Modified Mon Jul 31 06:54:19 2017 UTC (3 months, 2 weeks ago) by jeanlobry
adding NEWS file

Revision 2070 - Directory Listing
Modified Sun Jul 30 20:53:34 2017 UTC (3 months, 3 weeks ago) by jeanlobry
using doi

Revision 2069 - Directory Listing
Modified Sun Jul 30 17:58:36 2017 UTC (3 months, 3 weeks ago) by jeanlobry
adding a ref to ACNUC

Revision 2068 - Directory Listing
Modified Tue Jul 25 07:47:36 2017 UTC (3 months, 3 weeks ago) by jeanlobry
date

Revision 2067 - Directory Listing
Modified Sat Jul 22 20:22:50 2017 UTC (3 months, 4 weeks ago) by jeanlobry
date

Revision 2066 - Directory Listing
Modified Sat Jul 22 08:04:45 2017 UTC (3 months, 4 weeks ago) by jeanlobry
date

Revision 2065 - Directory Listing
Modified Tue Jul 18 15:04:18 2017 UTC (4 months ago) by jeanlobry
changing date to today

Revision 2064 - Directory Listing
Modified Mon Jul 17 10:08:40 2017 UTC (4 months ago) by jeanlobry
removing unused variables

Revision 2062 - Directory Listing
Modified Mon Jul 17 07:20:40 2017 UTC (4 months ago) by jeanlobry
Reverting to previous: still fails on windows

Revision 2061 - Directory Listing
Modified Mon Jul 17 06:36:34 2017 UTC (4 months ago) by jeanlobry
to see if kakstorture still fails on windows

Revision 2060 - Directory Listing
Modified Sun Jul 16 15:38:36 2017 UTC (4 months ago) by jeanlobry
fixing accurary bug repported by SCH

Revision 2059 - Directory Listing
Modified Tue Jul 4 16:37:40 2017 UTC (4 months, 2 weeks ago) by jeanlobry
Adding credit to Pamilo and Bianchi 1993

Revision 2058 - Directory Listing
Modified Tue Jul 4 16:10:09 2017 UTC (4 months, 2 weeks ago) by jeanlobry
Adding the original reference for Ka and Ks computation, that is Li et al. 1985

Revision 2057 - Directory Listing
Modified Tue Jul 4 13:07:40 2017 UTC (4 months, 2 weeks ago) by jeanlobry
Failed on windows

Revision 2055 - Directory Listing
Modified Tue Jul 4 11:30:32 2017 UTC (4 months, 2 weeks ago) by jeanlobry
new test file for kaks

Revision 2054 - Directory Listing
Modified Tue Jul 4 11:29:46 2017 UTC (4 months, 2 weeks ago) by jeanlobry
new test file for kaks

Revision 2053 - Directory Listing
Modified Tue Jul 4 11:29:20 2017 UTC (4 months, 2 weeks ago) by jeanlobry
new test file for kaks

Revision 2052 - Directory Listing
Modified Tue Jul 4 11:28:39 2017 UTC (4 months, 2 weeks ago) by jeanlobry
new test file for kaks

Revision 2051 - Directory Listing
Modified Tue Jul 4 11:28:14 2017 UTC (4 months, 2 weeks ago) by jeanlobry
new test file for kaks

Revision 2049 - Directory Listing
Modified Tue Jul 4 10:25:33 2017 UTC (4 months, 2 weeks ago) by jeanlobry
read.alignment can now handle legacy fasta format

Revision 2047 - Directory Listing
Modified Mon Jul 3 17:36:31 2017 UTC (4 months, 2 weeks ago) by jeanlobry
adding the new argument rmgap to kaks

Revision 2046 - Directory Listing
Modified Mon Jul 3 17:36:07 2017 UTC (4 months, 2 weeks ago) by jeanlobry
adding the new argument rmgap to kaks

Revision 2045 - Directory Listing
Modified Mon Jul 3 17:35:32 2017 UTC (4 months, 2 weeks ago) by jeanlobry
adding the new argument rmgap to kaks

Revision 2044 - Directory Listing
Modified Mon Jul 3 17:35:05 2017 UTC (4 months, 2 weeks ago) by jeanlobry
adding the new argument rmgap to kaks

Revision 2042 - Directory Listing
Modified Mon Jul 3 13:05:23 2017 UTC (4 months, 2 weeks ago) by jeanlobry
more exactly to 9.999999

Revision 2041 - Directory Listing
Modified Mon Jul 3 13:00:02 2017 UTC (4 months, 2 weeks ago) by jeanlobry
adding a routine test to check that non-finite values are never returned by kaks() function

Revision 2040 - Directory Listing
Modified Mon Jul 3 12:58:52 2017 UTC (4 months, 2 weeks ago) by jeanlobry
adding the isfinite condition so that non-finite values should no more be returned

Revision 2039 - Directory Listing
Modified Mon Jul 3 11:21:21 2017 UTC (4 months, 2 weeks ago) by jeanlobry
turning on again kaks test

Revision 2038 - Directory Listing
Modified Mon Jul 3 11:20:20 2017 UTC (4 months, 2 weeks ago) by jeanlobry
increasing version number

Revision 2037 - Directory Listing
Modified Wed Jun 28 09:20:41 2017 UTC (4 months, 3 weeks ago) by jeanlobry
UTF8

Revision 2036 - Directory Listing
Modified Mon Apr 24 13:35:30 2017 UTC (6 months, 3 weeks ago) by simonpenel
Removing carriage returns in alignments according to Matthias Doering suggestion 

Revision 2035 - Directory Listing
Modified Fri Apr 14 12:15:20 2017 UTC (7 months ago) by simonpenel
Modification of kaks according to Tomas Kalibera bug-finding tool suggestion

Revision 2033 - Directory Listing
Modified Wed Apr 5 12:14:24 2017 UTC (7 months, 2 weeks ago) by jeanlobry
incrementation

Revision 2031 - Directory Listing
Modified Wed Apr 5 08:49:19 2017 UTC (7 months, 2 weeks ago) by jeanlobry
to fix invalid URL

Revision 2030 - Directory Listing
Modified Wed Apr 5 08:15:35 2017 UTC (7 months, 2 weeks ago) by jeanlobry
to fix invalid URL

Revision 2029 - Directory Listing
Modified Wed Apr 5 08:11:55 2017 UTC (7 months, 2 weeks ago) by jeanlobry
to fix invalid URL

Revision 2027 - Directory Listing
Modified Mon Apr 3 07:40:18 2017 UTC (7 months, 2 weeks ago) by simonpenel
Addition of packagename_init.c and modifications for registered routines

Revision 2025 - Directory Listing
Modified Fri Oct 14 16:18:55 2016 UTC (13 months ago) by jeanlobry
fixing a bug in dotchart.uco

Revision 2024 - Directory Listing
Modified Fri Oct 14 16:12:35 2016 UTC (13 months ago) by jeanlobry
fixing a bug in dotchart.uco

Revision 2023 - Directory Listing
Modified Fri Oct 14 16:11:19 2016 UTC (13 months ago) by jeanlobry
increasing version number

Revision 2022 - Directory Listing
Modified Thu Oct 13 16:01:31 2016 UTC (13 months, 1 week ago) by jeanlobry
precisions about the data

Revision 2020 - Directory Listing
Modified Wed Oct 12 17:32:34 2016 UTC (13 months, 1 week ago) by jeanlobry
version number already incremented

Revision 2018 - Directory Listing
Modified Wed Oct 12 14:28:21 2016 UTC (13 months, 1 week ago) by simonpenel
DESCRIPTION: modif de l'url du forum

Revision 2017 - Directory Listing
Modified Wed Oct 12 12:16:31 2016 UTC (13 months, 1 week ago) by simonpenel
gcO2.Rd: correction de l'url http://pbil.univ-lyon1.fr/R/donnees/gcO2.txt

Revision 2016 - Directory Listing
Modified Wed Oct 12 10:41:02 2016 UTC (13 months, 1 week ago) by simonpenel
correction du nom du package dans CITATION

Revision 2015 - Directory Listing
Modified Mon Oct 10 18:24:04 2016 UTC (13 months, 1 week ago) by jeanlobry
I think it's a better link for bugs repport

Revision 2012 - Directory Listing
Modified Sun Oct 9 18:33:18 2016 UTC (13 months, 1 week ago) by jeanlobry
 

Revision 2011 - Directory Listing
Modified Sun Oct 9 18:27:21 2016 UTC (13 months, 1 week ago) by jeanlobry
 

Revision 2010 - Directory Listing
Modified Sun Oct 9 18:27:00 2016 UTC (13 months, 1 week ago) by jeanlobry
 

Revision 2007 - Directory Listing
Modified Sun Oct 9 11:38:54 2016 UTC (13 months, 1 week ago) by jeanlobry
how to reproduce figure 2 from Galtier & Lobry 1997

Revision 2006 - Directory Listing
Modified Sun Oct 9 11:28:04 2016 UTC (13 months, 1 week ago) by jeanlobry
increasing release number

Revision 2005 - Directory Listing
Modified Sun Oct 9 11:26:32 2016 UTC (13 months, 1 week ago) by jeanlobry
 

Revision 2004 - Directory Listing
Modified Sun Oct 9 11:25:59 2016 UTC (13 months, 1 week ago) by jeanlobry
 

Revision 2003 - Directory Listing
Modified Wed Oct 5 19:38:53 2016 UTC (13 months, 2 weeks ago) by jeanlobry
pour suivre les good practices

Revision 2002 - Directory Listing
Modified Wed Oct 5 19:32:02 2016 UTC (13 months, 2 weeks ago) by jeanlobry
Three new genetic codes

Revision 1999 - Directory Listing
Modified Wed Oct 5 18:59:21 2016 UTC (13 months, 2 weeks ago) by jeanlobry
SEQINR.UTIL est aussi dans sysdata.rda

Revision 1998 - Directory Listing
Modified Wed Oct 5 18:05:45 2016 UTC (13 months, 2 weeks ago) by jeanlobry
 

Revision 1997 - Directory Listing
Modified Wed Oct 5 17:39:30 2016 UTC (13 months, 2 weeks ago) by jeanlobry
three more genetic codes

Revision 1996 - Directory Listing
Modified Wed Oct 5 17:34:04 2016 UTC (13 months, 2 weeks ago) by jeanlobry
three more genetic codes

Revision 1994 - Directory Listing
Modified Wed Oct 5 17:02:48 2016 UTC (13 months, 2 weeks ago) by jeanlobry
incrementation

Revision 1993 - Directory Listing
Modified Fri Sep 2 09:06:47 2016 UTC (14 months, 2 weeks ago) by simonpenel
Date modification

Revision 1991 - Directory Listing
Modified Thu Sep 1 13:02:59 2016 UTC (14 months, 2 weeks ago) by simonpenel
improved read.alignment function thanks  to Matthew Krause

Revision 1990 - Directory Listing
Modified Thu Sep 1 13:02:24 2016 UTC (14 months, 2 weeks ago) by simonpenel
improved read.alignment function thanks  to Matthew Krause

Revision 1989 - Directory Listing
Modified Wed Aug 31 02:45:12 2016 UTC (14 months, 2 weeks ago) by jeanlobry
incrementing version number

Revision 1988 - Directory Listing
Modified Thu Jul 21 15:50:52 2016 UTC (15 months, 4 weeks ago) by simonpenel
Testing zlib sockets

Revision 1986 - Directory Listing
Modified Mon Jul 18 16:33:11 2016 UTC (16 months ago) by jeanlobry
DESCRIPTION without Author and Maintainer fields because now deduced from Author@R

Revision 1984 - Directory Listing
Modified Wed Jul 13 15:50:41 2016 UTC (16 months, 1 week ago) by jeanlobry
release date update

Revision 1983 - Directory Listing
Modified Tue Jul 12 19:59:29 2016 UTC (16 months, 1 week ago) by jeanlobry
GPL needs a copyright holder

Revision 1980 - Directory Listing
Modified Tue Jul 12 17:08:34 2016 UTC (16 months, 1 week ago) by jeanlobry
adding a zlib argument to extractseqs

Revision 1979 - Directory Listing
Modified Tue Jul 12 17:08:12 2016 UTC (16 months, 1 week ago) by jeanlobry
adding a zlib argument to extractseqs

Revision 1978 - Directory Listing
Modified Thu Jul 7 18:55:51 2016 UTC (16 months, 1 week ago) by jeanlobry
incrementing version number

Revision 1977 - Directory Listing
Modified Tue Jul 5 13:49:45 2016 UTC (16 months, 2 weeks ago) by simonpenel
Modif de la date

Revision 1976 - Directory Listing
Modified Fri Jul 1 20:58:47 2016 UTC (16 months, 2 weeks ago) by jeanlobry
12 cm is OK for the reference manual

Revision 1974 - Directory Listing
Modified Fri Jul 1 11:55:21 2016 UTC (16 months, 2 weeks ago) by jeanlobry
adding a picture in waterabs data documentation

Revision 1973 - Directory Listing
Modified Fri Jul 1 07:48:32 2016 UTC (16 months, 2 weeks ago) by jeanlobry
backslash does not work

Revision 1972 - Directory Listing
Modified Thu Jun 30 19:19:49 2016 UTC (16 months, 2 weeks ago) by jeanlobry
essai du double anti-barre inverse

Revision 1971 - Directory Listing
Modified Thu Jun 30 18:33:09 2016 UTC (16 months, 2 weeks ago) by jeanlobry
adding figures in the dia.db.growth function

Revision 1970 - Directory Listing
Modified Thu Jun 30 17:44:29 2016 UTC (16 months, 2 weeks ago) by jeanlobry
adding a figure in the chargaff dataset documentation

Revision 1969 - Directory Listing
Modified Thu Jun 30 17:08:16 2016 UTC (16 months, 2 weeks ago) by jeanlobry
adding a figure in aacost data documentation

Revision 1968 - Directory Listing
Modified Thu Jun 30 17:00:35 2016 UTC (16 months, 2 weeks ago) by jeanlobry
too fat

Revision 1967 - Directory Listing
Modified Thu Jun 30 17:00:08 2016 UTC (16 months, 2 weeks ago) by jeanlobry
too fat

Revision 1966 - Directory Listing
Modified Thu Jun 30 16:32:02 2016 UTC (16 months, 2 weeks ago) by jeanlobry
typo

Revision 1965 - Directory Listing
Modified Thu Jun 30 16:29:45 2016 UTC (16 months, 2 weeks ago) by jeanlobry
Adding a figure in m16j data documentation

Revision 1963 - Directory Listing
Modified Thu Jun 30 12:45:40 2016 UTC (16 months, 3 weeks ago) by jeanlobry
e-mail in biomserv no more valid

Revision 1957 - Directory Listing
Modified Tue Jun 21 12:40:42 2016 UTC (16 months, 4 weeks ago) by jeanlobry
gb2fasta now uses a local file example

Revision 1956 - Directory Listing
Modified Tue Jun 21 12:26:42 2016 UTC (16 months, 4 weeks ago) by jeanlobry
typo

Revision 1954 - Directory Listing
Modified Tue Jun 21 08:28:48 2016 UTC (16 months, 4 weeks ago) by jeanlobry
Example of a MAQ binary fasta file

Revision 1953 - Directory Listing
Modified Tue Jun 21 08:24:18 2016 UTC (16 months, 4 weeks ago) by jeanlobry
adding missing files for read.fasta example

Revision 1952 - Directory Listing
Modified Tue Jun 21 08:15:47 2016 UTC (16 months, 4 weeks ago) by jeanlobry
example of how to export sequences in a FASTA file

Revision 1951 - Directory Listing
Modified Tue Jun 21 08:10:03 2016 UTC (16 months, 4 weeks ago) by jeanlobry
adding doc about fasta file extension names

Revision 1949 - Directory Listing
Modified Fri Jun 17 19:41:39 2016 UTC (17 months ago) by jeanlobry
adding a suppressWarning to fix Haruo Susuki request

Revision 1947 - Directory Listing
Modified Fri Jun 17 18:52:51 2016 UTC (17 months ago) by jeanlobry
Synchronizing seqinr version with R version

Revision 1946 - Directory Listing
Modified Fri Jun 17 18:51:28 2016 UTC (17 months ago) by jeanlobry
Setting the forum for BugsRepport

Revision 1944 - Directory Listing
Modified Tue Jun 7 10:32:48 2016 UTC (17 months, 1 week ago) by jeanlobry
Put in dont run the example that needs internet connection

Revision 1943 - Directory Listing
Modified Tue Jun 7 10:28:01 2016 UTC (17 months, 1 week ago) by jeanlobry
Fixing the reference to MAQ

Revision 1938 - Directory Listing
Modified Mon Jun 6 11:55:26 2016 UTC (17 months, 2 weeks ago) by simonpenel
Corrected URL in choosebank.Rd

Revision 1937 - Directory Listing
Modified Mon Jun 6 09:00:02 2016 UTC (17 months, 2 weeks ago) by simonpenel
Corrected URL in EXP.Rd

Revision 1936 - Directory Listing
Modified Fri Jun 3 17:38:46 2016 UTC (17 months, 2 weeks ago) by jeanlobry
Suggested by CRAN RCheck result

Revision 1935 - Directory Listing
Modified Fri Jun 3 17:31:51 2016 UTC (17 months, 2 weeks ago) by jeanlobry
Fixing microbiology today URL

Revision 1934 - Directory Listing
Modified Fri Jun 3 17:26:43 2016 UTC (17 months, 2 weeks ago) by jeanlobry
Fixing iupac URL

Revision 1933 - Directory Listing
Modified Fri Jun 3 17:21:44 2016 UTC (17 months, 2 weeks ago) by jeanlobry
Fixing EMBOSS URL

Revision 1932 - Directory Listing
Modified Fri Jun 3 17:09:21 2016 UTC (17 months, 2 weeks ago) by jeanlobry
Moving URL pbil.univ-lyon1.fr to doua.prabi.fr

Revision 1931 - Directory Listing
Modified Fri Jun 3 16:29:25 2016 UTC (17 months, 2 weeks ago) by jeanlobry
typo

Revision 1930 - Directory Listing
Modified Fri Jun 3 16:29:05 2016 UTC (17 months, 2 weeks ago) by jeanlobry
typo

Revision 1929 - Directory Listing
Modified Fri Jun 3 16:25:25 2016 UTC (17 months, 2 weeks ago) by jeanlobry
authors polishing including UTF-8

Revision 1928 - Directory Listing
Modified Fri Jun 3 15:59:03 2016 UTC (17 months, 2 weeks ago) by jeanlobry
Adding two contributors

Revision 1927 - Directory Listing
Modified Fri Jun 3 15:48:04 2016 UTC (17 months, 2 weeks ago) by jeanlobry
This is to get rid of the checking S3 generic/method consistency ... NOTE

Revision 1924 - Directory Listing
Modified Fri Jun 3 13:54:05 2016 UTC (17 months, 2 weeks ago) by jeanlobry
This is the idea of what should be done to get rid of the checking S3 generic/method consistency ... NOTE

Revision 1922 - Directory Listing
Modified Fri Jun 3 13:37:54 2016 UTC (17 months, 2 weeks ago) by jeanlobry
Fix the wrning about segmented

Revision 1921 - Directory Listing
Modified Fri Jun 3 13:30:27 2016 UTC (17 months, 2 weeks ago) by jeanlobry
One R CMD Check Note fixed

Revision 1920 - Directory Listing
Modified Fri Jun 3 13:28:18 2016 UTC (17 months, 2 weeks ago) by jeanlobry
One R CMD Check Note fixed

Revision 1919 - Directory Listing
Modified Fri Jun 3 13:17:26 2016 UTC (17 months, 2 weeks ago) by jeanlobry
Repository not needed nor even documented

Revision 1918 - Directory Listing
Modified Fri Jun 3 13:07:04 2016 UTC (17 months, 2 weeks ago) by jeanlobry
Using the Authors@R field

Revision 1916 - Directory Listing
Modified Fri Jun 3 12:41:50 2016 UTC (17 months, 2 weeks ago) by jeanlobry
One UTF-8 warning corrected

Revision 1915 - Directory Listing
Modified Fri Jun 3 12:14:50 2016 UTC (17 months, 2 weeks ago) by simonpenel
Switch segmented from  Suggests  to Imports

Revision 1912 - Directory Listing
Modified Thu Jun 2 19:05:42 2016 UTC (17 months, 2 weeks ago) by jeanlobry
Giving an encoding is mandatory for our contributors Necsulea and Perriere who deserve their diacritics

Revision 1902 - Directory Listing
Modified Thu Jun 2 14:27:43 2016 UTC (17 months, 2 weeks ago) by jeanlobry
documentation bug fix and UTF-8

Revision 1899 - Directory Listing
Modified Thu Jun 2 12:58:01 2016 UTC (17 months, 2 weeks ago) by jeanlobry
file updates

Revision 1894 - Directory Listing
Modified Thu Jun 2 11:55:59 2016 UTC (17 months, 2 weeks ago) by jeanlobry
typo

Revision 1893 - Directory Listing
Modified Thu Jun 2 11:36:34 2016 UTC (17 months, 2 weeks ago) by jeanlobry
using the gzipped ct.fasta.gz

Revision 1892 - Directory Listing
Modified Thu Jun 2 11:36:01 2016 UTC (17 months, 2 weeks ago) by jeanlobry
using the gzipped ct.fasta.gz

Revision 1891 - Directory Listing
Modified Thu Jun 2 11:27:24 2016 UTC (17 months, 2 weeks ago) by jeanlobry
example with a gzipped file

Revision 1890 - Directory Listing
Modified Thu Jun 2 11:24:50 2016 UTC (17 months, 2 weeks ago) by jeanlobry
using gzipped files for read.fasta

Revision 1888 - Directory Listing
Modified Thu Jun 2 10:40:10 2016 UTC (17 months, 2 weeks ago) by jeanlobry
to fix the getLength(ec999) bug repported by Haruo Suzuki

Revision 1886 - Directory Listing
Modified Thu Jun 2 09:22:42 2016 UTC (17 months, 2 weeks ago) by jeanlobry
updating file names

Revision 1885 - Directory Listing
Modified Thu Jun 2 09:18:04 2016 UTC (17 months, 2 weeks ago) by jeanlobry
updating file names

Revision 1884 - Directory Listing
Modified Thu Jun 2 08:46:59 2016 UTC (17 months, 2 weeks ago) by jeanlobry
adding missing files

Revision 1883 - Directory Listing
Modified Wed Jun 1 18:38:45 2016 UTC (17 months, 2 weeks ago) by jeanlobry
adding observed behaviour today

Revision 1882 - Directory Listing
Modified Wed Jun 1 18:32:46 2016 UTC (17 months, 2 weeks ago) by jeanlobry
dontrun no more true

Revision 1881 - Directory Listing
Modified Wed Jun 1 18:31:23 2016 UTC (17 months, 2 weeks ago) by jeanlobry
dontrun no more true

Revision 1880 - Directory Listing
Modified Wed Jun 1 18:30:05 2016 UTC (17 months, 2 weeks ago) by jeanlobry
query assignment

Revision 1879 - Directory Listing
Modified Wed Jun 1 18:28:58 2016 UTC (17 months, 2 weeks ago) by jeanlobry
query assignment

Revision 1878 - Directory Listing
Modified Wed Jun 1 18:27:59 2016 UTC (17 months, 2 weeks ago) by jeanlobry
query assignment

Revision 1877 - Directory Listing
Modified Wed Jun 1 18:27:22 2016 UTC (17 months, 2 weeks ago) by jeanlobry
dontrun no more true

Revision 1876 - Directory Listing
Modified Wed Jun 1 18:24:36 2016 UTC (17 months, 2 weeks ago) by jeanlobry
query assignment

Revision 1875 - Directory Listing
Modified Wed Jun 1 18:22:01 2016 UTC (17 months, 2 weeks ago) by jeanlobry
query assignment

Revision 1874 - Directory Listing
Modified Wed Jun 1 18:21:18 2016 UTC (17 months, 2 weeks ago) by jeanlobry
query assignment

Revision 1873 - Directory Listing
Modified Wed Jun 1 18:15:32 2016 UTC (17 months, 2 weeks ago) by jeanlobry
query assignment

Revision 1872 - Directory Listing
Modified Wed Jun 1 18:12:41 2016 UTC (17 months, 2 weeks ago) by jeanlobry
dontrun no more true

Revision 1871 - Directory Listing
Modified Wed Jun 1 17:51:30 2016 UTC (17 months, 2 weeks ago) by jeanlobry
dontrun no more true

Revision 1870 - Directory Listing
Modified Wed Jun 1 17:49:07 2016 UTC (17 months, 2 weeks ago) by jeanlobry
URL no more accessible

Revision 1869 - Directory Listing
Modified Wed Jun 1 17:39:45 2016 UTC (17 months, 2 weeks ago) by jeanlobry
query assignment

Revision 1868 - Directory Listing
Modified Wed Jun 1 17:32:14 2016 UTC (17 months, 2 weeks ago) by jeanlobry
query assignment

Revision 1867 - Directory Listing
Modified Wed Jun 1 17:29:23 2016 UTC (17 months, 2 weeks ago) by jeanlobry
504 is expected for SUBINLNG in emblTP

Revision 1838 - Directory Listing
Modified Wed Apr 27 14:31:37 2016 UTC (18 months, 3 weeks ago) by simonpenel
 fixing date and release 

Revision 1837 - Directory Listing
Modified Wed Apr 27 13:41:12 2016 UTC (18 months, 3 weeks ago) by simonpenel
 ambigous bases bug fixed in comp function (r->y, y->r) 

Revision 1836 - Directory Listing
Modified Thu Jan 8 14:31:44 2015 UTC (2 years, 10 months ago) by simonpenel
Replace depends by import

Revision 1835 - Directory Listing
Modified Thu Dec 4 17:02:49 2014 UTC (2 years, 11 months ago) by simonpenel
Modification of release number

Revision 1834 - Directory Listing
Modified Thu Dec 4 17:02:09 2014 UTC (2 years, 11 months ago) by simonpenel
Addition of datalist

Revision 1833 - Directory Listing
Modified Tue Dec 2 17:01:03 2014 UTC (2 years, 11 months ago) by simonpenel
Adding little endian setting to pass Solaris tests

Revision 1832 - Directory Listing
Modified Tue Dec 2 16:35:05 2014 UTC (2 years, 11 months ago) by simonpenel
Updating DESCRIPTION

Revision 1831 - Directory Listing
Modified Tue Dec 2 16:34:12 2014 UTC (2 years, 11 months ago) by simonpenel
Removal of zlib code and headers  with help from Prof. Ripley

Revision 1830 - Directory Listing
Modified Tue Dec 2 16:31:43 2014 UTC (2 years, 11 months ago) by simonpenel


Revision 1829 - Directory Listing
Modified Thu Nov 27 15:41:19 2014 UTC (2 years, 11 months ago) by simonpenel
bb.fasta is not used

Revision 1828 - Directory Listing
Modified Thu Nov 27 14:50:55 2014 UTC (2 years, 11 months ago) by simonpenel
Now goldtable15Dec07 is available on the ftp of pbil

Revision 1827 - Directory Listing
Modified Thu Nov 27 11:18:53 2014 UTC (2 years, 11 months ago) by simonpenel
Removing ct data

Revision 1826 - Directory Listing
Modified Thu Nov 27 11:05:49 2014 UTC (2 years, 11 months ago) by simonpenel
Now acces to voluminous data is done via ftp, changing examples

Revision 1825 - Directory Listing
Modified Thu Nov 27 11:04:53 2014 UTC (2 years, 11 months ago) by simonpenel
Now acces to voluminous data is done via ftp, changing R code 

Revision 1824 - Directory Listing
Modified Wed Nov 26 13:55:16 2014 UTC (2 years, 11 months ago) by simonpenel
Updating version number

Revision 1823 - Directory Listing
Modified Wed Nov 26 13:28:04 2014 UTC (2 years, 11 months ago) by simonpenel
Changing sequence name in  plot.SeqAcnucWeb example in order to process more than 1 sub-sequence type

Revision 1822 - Directory Listing
Modified Wed Nov 26 13:14:40 2014 UTC (2 years, 11 months ago) by simonpenel
Replace gloalEnv by seqinrEnv in  plot.SeqAcnucWeb.R

Revision 1821 - Directory Listing
Modified Wed Nov 26 13:13:43 2014 UTC (2 years, 11 months ago) by simonpenel
Changing acnuc database in example

Revision 1820 - Directory Listing
Modified Wed Nov 26 10:34:39 2014 UTC (2 years, 11 months ago) by simonpenel
Modifications  of  examples involvng the query function according to
the new features of R-3.1.2 : it is not possible to change an object
belonging the global environment from a package. Eaxmples have been 
modified according to a suggestion from Tang Chin Cheung.
 
 


Revision 1819 - Directory Listing
Modified Wed Nov 26 09:12:04 2014 UTC (2 years, 11 months ago) by simonpenel
Remplce SwissprotTP by EmblTP

Revision 1818 - Directory Listing
Modified Wed Nov 26 08:59:09 2014 UTC (2 years, 11 months ago) by simonpenel
Addition of SystemRequirements field in DESCRIPTION

Revision 1817 - Directory Listing
Modified Thu Nov 6 17:09:25 2014 UTC (3 years ago) by simonpenel
Modification of wrong url, setting example in dotchart.uco to dontrun

Revision 1816 - Directory Listing
Modified Wed Nov 5 16:53:58 2014 UTC (3 years ago) by simonpenel
Start fusion with the 3.0-9 version from CRAN which is ok for  R-3.1.2

Revision 1815 - Directory Listing
Modified Fri Oct 10 12:35:58 2014 UTC (3 years, 1 month ago) by simonpenel
adding "row.names(matali)<-NULL "  due to the change

      \item \code{apply(m, 2, identity)} is now the same as the matrix
      \code{m} when it has \emph{named} row names.


Revision 1804 - Directory Listing
Modified Tue Jun 10 20:23:47 2014 UTC (3 years, 5 months ago) by jeanlobry
add NS and NK in documentation

Revision 1799 - Directory Listing
Modified Fri Jun 6 17:56:13 2014 UTC (3 years, 5 months ago) by jeanlobry
updated version of the article is no more present directly in the distribution

Revision 1796 - Directory Listing
Modified Fri Jun 6 17:16:14 2014 UTC (3 years, 5 months ago) by jeanlobry
link source not available in dia.db.growth

Revision 1795 - Directory Listing
Modified Fri Jun 6 17:07:05 2014 UTC (3 years, 5 months ago) by jeanlobry
default broken link fixed

Revision 1786 - Directory Listing
Modified Fri Jun 6 11:17:09 2014 UTC (3 years, 5 months ago) by jeanlobry
set version to 3.0-11

Revision 1781 - Directory Listing
Modified Fri Jun 6 10:26:33 2014 UTC (3 years, 5 months ago) by jeanlobry
add an as.string argument so that write.fasta can handle sequences when provided as strings

Revision 1780 - Directory Listing
Modified Fri Jun 6 10:26:15 2014 UTC (3 years, 5 months ago) by jeanlobry
add an as.string argument so that write.fasta can handle sequences when provided as strings

Revision 1778 - Directory Listing
Modified Wed May 21 15:38:04 2014 UTC (3 years, 6 months ago) by simonpenel
Now the mase format is checked, thanks to Jan-Hendrik Troesemeier

Revision 1777 - Directory Listing
Modified Thu Jan 30 14:39:20 2014 UTC (3 years, 9 months ago) by simonpenel
In function dist.alignment with nucleotides sequences, if gap option is set to 1, gaps will be counted in the identity measure (thanks to Peter Hraber)

Revision 1776 - Directory Listing
Modified Mon Oct 7 15:11:49 2013 UTC (4 years, 1 month ago) by simonpenel
Updating version and date

Revision 1775 - Directory Listing
Modified Fri Oct 4 11:44:41 2013 UTC (4 years, 1 month ago) by simonpenel
Checking for N in the sequence, thanks to Jeremy Shearman

Revision 1774 - Directory Listing
Modified Wed May 29 15:27:16 2013 UTC (4 years, 5 months ago) by simonpenel
Modification of C source : sequence name with space are correctly treated in fasta format

Revision 1773 - Directory Listing
Modified Tue Dec 11 16:03:18 2012 UTC (4 years, 11 months ago) by simonpenel
Modification of version and date

Revision 1772 - Directory Listing
Modified Tue Dec 11 14:26:19 2012 UTC (4 years, 11 months ago) by simonpenel
Removing lib.R

Revision 1771 - Directory Listing
Modified Tue Dec 11 14:09:38 2012 UTC (4 years, 11 months ago) by simonpenel
Addition of a NAMESPACE. Addition of LazyData option in DESCRIPTION

Revision 1770 - Directory Listing
Modified Mon Aug 13 09:06:59 2012 UTC (5 years, 3 months ago) by simonpenel
The pipe caracter is now correctly processed thanks to Grabor Grothendieck

Revision 1769 - Directory Listing
Modified Wed Feb 22 10:15:53 2012 UTC (5 years, 8 months ago) by simonpenel
Small modifications :  supression of stderr C stuff, and partial match problems

Revision 1768 - Directory Listing
Modified Mon Feb 20 12:00:59 2012 UTC (5 years, 9 months ago) by simonpenel
Changing date and release number

Revision 1767 - Directory Listing
Modified Fri Feb 17 14:29:26 2012 UTC (5 years, 9 months ago) by simonpenel
Modification of kaks: option verbose display  values of L0,L2,L4,A0,A2,A4,B0,B2,B4 

Revision 1766 - Directory Listing
Modified Wed Feb 15 09:30:35 2012 UTC (5 years, 9 months ago) by simonpenel
Modification of example according to modification in the R code

Revision 1765 - Directory Listing
Modified Tue Feb 7 12:34:34 2012 UTC (5 years, 9 months ago) by simonpenel
Changing  'superior' into 'superior or equal' in the consenus function with thershold option. Thanks to Dave Gerrard for signaling this bug

Revision 1764 - Directory Listing
Modified Wed Dec 7 16:21:05 2011 UTC (5 years, 11 months ago) by simonpenel
read.alignment now return an error message is return when the format is not correct. Thanks to Dave Gerrard for signaling this bug.

Revision 1763 - Directory Listing
Modified Wed Oct 12 09:17:54 2011 UTC (6 years, 1 month ago) by simonpenel
Modify date and release 

Revision 1762 - Directory Listing
Modified Wed Oct 12 09:15:53 2011 UTC (6 years, 1 month ago) by simonpenel
Changing the grep to "Release(.+)Month" in db.growth function. Thanks to John Davey for detecting this bug.

Revision 1761 - Directory Listing
Modified Tue Sep 20 12:59:55 2011 UTC (6 years, 2 months ago) by simonpenel
Addition of the "recstat" function (Prediction of coding DNA sequences through the use of a  Correspondence Analysis). Guy Perriere is now part of the seqinr project.

Revision 1760 - Directory Listing
Modified Mon May 30 14:37:05 2011 UTC (6 years, 5 months ago) by simonpenel
The [ is not anymore translated into \[ but into \lbrack{} ( idem for ]).
Thanks to Gabor Grothendieck for signaling this bug


Revision 1759 - Directory Listing
Modified Wed Apr 6 11:32:48 2011 UTC (6 years, 7 months ago) by simonpenel
Supression of doc

Revision 1758 - Directory Listing
Modified Tue Apr 5 10:05:16 2011 UTC (6 years, 7 months ago) by simonpenel
The sequence file ATH1_pep_cm_20040228.fasta is only used for vignette building thus it has been moved into
the www directory. The vignette seqinr_2_0-7.pdf has been removed since it  is already present in the www
directory.

Revision 1757 - Directory Listing
Modified Mon Mar 28 15:22:50 2011 UTC (6 years, 7 months ago) by simonpenel
Modification of date and version

Revision 1756 - Directory Listing
Modified Thu Mar 24 16:38:34 2011 UTC (6 years, 7 months ago) by simonpenel
Directory pkg/inst/doc/src has been moved to www/src in order to diminue data size

Revision 1755 - Directory Listing
Modified Thu Mar 24 15:07:23 2011 UTC (6 years, 7 months ago) by simonpenel
Data have been resaved with tools:resaveRdaFiles to decrease data size

Revision 1754 - Directory Listing
Modified Wed Jan 26 13:53:50 2011 UTC (6 years, 9 months ago) by simonpenel
Correcting the reference to Fitch 1966 (pointed  out by Leonor Palmeira) 

Revision 1753 - Directory Listing
Modified Mon Oct 18 16:30:43 2010 UTC (7 years, 1 month ago) by simonpenel
New version number is 3.0-1

Revision 1752 - Directory Listing
Modified Thu Oct 14 09:12:04 2010 UTC (7 years, 1 month ago) by simonpenel
The error generated by the rawToChar function is now detected, fixed and signaled.

Revision 1751 - Directory Listing
Modified Fri Sep 10 09:23:48 2010 UTC (7 years, 2 months ago) by simonpenel
Adding y and r in the list of bases in  the comp function - Thanks to Darren Obbard

Revision 1750 - Directory Listing
Modified Fri Aug 27 07:59:33 2010 UTC (7 years, 2 months ago) by simonpenel
Correction  du format dans man/fasta.Rd et modification de la date.

Revision 1749 - Directory Listing
Modified Wed Aug 25 12:44:39 2010 UTC (7 years, 2 months ago) by simonpenel
Addition of documentation for alignment formats datasets

Revision 1748 - Directory Listing
Modified Mon May 24 09:29:02 2010 UTC (7 years, 5 months ago) by lobry
 

Revision 1747 - Directory Listing
Modified Mon May 24 09:28:25 2010 UTC (7 years, 5 months ago) by lobry
 

Revision 1746 - Directory Listing
Modified Mon May 24 09:28:04 2010 UTC (7 years, 5 months ago) by lobry
 

Revision 1745 - Directory Listing
Modified Sat Mar 20 11:14:52 2010 UTC (7 years, 8 months ago) by lobry
new version number

Revision 1744 - Directory Listing
Modified Sat Mar 20 11:06:39 2010 UTC (7 years, 8 months ago) by lobry
new version number

Revision 1743 - Directory Listing
Modified Wed Mar 17 19:06:56 2010 UTC (7 years, 8 months ago) by lobry
fixing the sapply/lapply bug

Revision 1742 - Directory Listing
Modified Wed Mar 17 18:46:56 2010 UTC (7 years, 8 months ago) by lobry
fixing the sapply/lapply bug

Revision 1741 - Directory Listing
Modified Sun Mar 7 11:15:09 2010 UTC (7 years, 8 months ago) by lobry
rho has its own file now

Revision 1740 - Directory Listing
Modified Sun Mar 7 11:14:11 2010 UTC (7 years, 8 months ago) by lobry
rho() has gained a wordsize argument as suggested by Avril Coghlan

Revision 1739 - Directory Listing
Modified Sun Mar 7 11:13:46 2010 UTC (7 years, 8 months ago) by lobry
rho() has gained a wordsize argument as suggested by Avril Coghlan

Revision 1738 - Directory Listing
Modified Sun Mar 7 11:13:18 2010 UTC (7 years, 8 months ago) by lobry
word -> wordsize

Revision 1737 - Directory Listing
Modified Sun Mar 7 11:12:45 2010 UTC (7 years, 8 months ago) by lobry
rho() has gained a wordsize argument as suggested by Avril Coghlan

Revision 1736 - Directory Listing
Modified Sun Mar 7 10:04:07 2010 UTC (7 years, 8 months ago) by lobry
word -> wordsize

Revision 1735 - Directory Listing
Modified Sun Mar 7 10:03:59 2010 UTC (7 years, 8 months ago) by lobry
word -> wordsize

Revision 1734 - Directory Listing
Modified Sat Mar 6 17:55:01 2010 UTC (7 years, 8 months ago) by lobry
New quality control routine check

Revision 1733 - Directory Listing
Modified Sat Mar 6 17:53:29 2010 UTC (7 years, 8 months ago) by lobry
New quality control routine check

Revision 1732 - Directory Listing
Modified Sat Mar 6 17:52:39 2010 UTC (7 years, 8 months ago) by lobry
New quality control routine check

Revision 1731 - Directory Listing
Modified Sat Mar 6 17:34:08 2010 UTC (7 years, 8 months ago) by lobry
No more File argument

Revision 1730 - Directory Listing
Modified Sat Mar 6 17:33:31 2010 UTC (7 years, 8 months ago) by lobry
No more File argument

Revision 1729 - Directory Listing
Modified Sat Mar 6 17:33:12 2010 UTC (7 years, 8 months ago) by lobry
No more File argument

Revision 1728 - Directory Listing
Modified Sat Mar 6 10:01:43 2010 UTC (7 years, 8 months ago) by lobry
memory leak problem fix in read_fasta_align

Revision 1727 - Directory Listing
Modified Sat Mar 6 09:53:57 2010 UTC (7 years, 8 months ago) by lobry
memory leak problem fix in read_fasta_align

Revision 1726 - Directory Listing
Modified Sat Mar 6 09:52:44 2010 UTC (7 years, 8 months ago) by lobry
memory leak problem fix in read_fasta_align

Revision 1725 - Directory Listing
Modified Fri Feb 26 19:42:09 2010 UTC (7 years, 8 months ago) by lobry
2.0-9 release tag

Revision 1724 - Directory Listing
Modified Fri Feb 26 19:39:16 2010 UTC (7 years, 8 months ago) by lobry
typos

Revision 1723 - Directory Listing
Modified Sat Feb 20 17:49:22 2010 UTC (7 years, 9 months ago) by lobry
fixing Oliver Clay bug

Revision 1722 - Directory Listing
Modified Sat Feb 20 17:48:35 2010 UTC (7 years, 9 months ago) by lobry
fixing Oliver Clay bug

Revision 1721 - Directory Listing
Modified Fri Nov 27 17:08:16 2009 UTC (7 years, 11 months ago) by lobry
new message when an acc is not found

Revision 1720 - Directory Listing
Modified Fri Nov 27 14:44:26 2009 UTC (7 years, 11 months ago) by lobry
new message when an acc is not found

Revision 1719 - Directory Listing
Modified Wed Nov 18 19:49:36 2009 UTC (8 years ago) by lobry
doc more explicit

Revision 1718 - Directory Listing
Modified Wed Nov 18 19:49:10 2009 UTC (8 years ago) by lobry
plural

Revision 1717 - Directory Listing
Modified Wed Nov 18 19:41:45 2009 UTC (8 years ago) by lobry
doc more explicit

Revision 1716 - Directory Listing
Modified Wed Nov 18 19:41:33 2009 UTC (8 years ago) by lobry
doc more explicit

Revision 1715 - Directory Listing
Modified Mon Nov 16 17:29:42 2009 UTC (8 years ago) by lobry
release number++

Revision 1714 - Directory Listing
Modified Sun Nov 15 11:05:48 2009 UTC (8 years ago) by lobry
Date tag changed

Revision 1713 - Directory Listing
Modified Sun Nov 15 11:05:11 2009 UTC (8 years ago) by lobry
new link to where.is.this.acc() function

Revision 1711 - Directory Listing
Modified Sun Nov 15 11:01:21 2009 UTC (8 years ago) by lobry
doc 2.0-7

Revision 1710 - Directory Listing
Modified Sun Nov 15 10:57:23 2009 UTC (8 years ago) by lobry
last release note for 2.0-7

Revision 1709 - Directory Listing
Modified Sun Nov 15 10:17:57 2009 UTC (8 years ago) by lobry
 

Revision 1708 - Directory Listing
Modified Sun Nov 15 10:04:33 2009 UTC (8 years ago) by lobry
stopAtFirst argument suggested by Avril Coghlan

Revision 1707 - Directory Listing
Modified Sun Nov 15 10:04:05 2009 UTC (8 years ago) by lobry
stopAtFirst argument suggested by Avril Coghlan

Revision 1706 - Directory Listing
Modified Thu Nov 12 18:11:08 2009 UTC (8 years ago) by lobry
looking for an accession number utility

Revision 1705 - Directory Listing
Modified Thu Nov 12 18:10:48 2009 UTC (8 years ago) by lobry
looking for an accession number utility

Revision 1704 - Directory Listing
Modified Thu Nov 12 18:10:24 2009 UTC (8 years ago) by lobry
looking for an accession number utility

Revision 1703 - Directory Listing
Modified Sat Nov 7 08:10:53 2009 UTC (8 years ago) by lobry
fix the bug reported by Darren Obbard

Revision 1702 - Directory Listing
Modified Sat Nov 7 08:10:16 2009 UTC (8 years ago) by lobry
fix the bug reported by Darren Obbard

Revision 1701 - Directory Listing
Modified Sat Nov 7 08:09:55 2009 UTC (8 years ago) by lobry
fix the bug reported by Darren Obbard

Revision 1698 - Directory Listing
Modified Thu Nov 5 14:07:03 2009 UTC (8 years ago) by lobry
version 2.0-7 of manual

Revision 1697 - Directory Listing
Modified Thu Nov 5 14:06:19 2009 UTC (8 years ago) by lobry
 

Revision 1696 - Directory Listing
Modified Thu Nov 5 14:03:00 2009 UTC (8 years ago) by lobry
typo

Revision 1695 - Directory Listing
Modified Thu Nov 5 13:58:28 2009 UTC (8 years ago) by lobry
compil R 2.10

Revision 1694 - Directory Listing
Modified Thu Nov 5 13:56:54 2009 UTC (8 years ago) by lobry
use standard dataset m16j

Revision 1693 - Directory Listing
Modified Thu Nov 5 13:51:50 2009 UTC (8 years ago) by lobry
compil R 2.10

Revision 1692 - Directory Listing
Modified Thu Nov 5 13:48:59 2009 UTC (8 years ago) by lobry
compil R 2.10

Revision 1691 - Directory Listing
Modified Thu Nov 5 13:27:02 2009 UTC (8 years ago) by lobry
compil R 2.10

Revision 1690 - Directory Listing
Modified Thu Nov 5 13:24:32 2009 UTC (8 years ago) by lobry
compil R 2.10

Revision 1689 - Directory Listing
Modified Thu Nov 5 13:20:48 2009 UTC (8 years ago) by lobry
compil R 2.10

Revision 1688 - Directory Listing
Modified Thu Nov 5 13:20:35 2009 UTC (8 years ago) by lobry
FIXME basic regular expressions are no more allowed

Revision 1687 - Directory Listing
Modified Thu Nov 5 12:43:28 2009 UTC (8 years ago) by lobry
compil R 2.10

Revision 1686 - Directory Listing
Modified Thu Nov 5 12:24:04 2009 UTC (8 years ago) by lobry
compil R 2.10

Revision 1685 - Directory Listing
Modified Thu Nov 5 11:54:45 2009 UTC (8 years ago) by lobry
compil R 2.10

Revision 1684 - Directory Listing
Modified Thu Nov 5 11:54:14 2009 UTC (8 years ago) by lobry
fig resizing

Revision 1683 - Directory Listing
Modified Thu Nov 5 10:22:48 2009 UTC (8 years ago) by lobry
compil R 2.10

Revision 1682 - Directory Listing
Modified Thu Nov 5 10:16:04 2009 UTC (8 years ago) by lobry
compil R 2.10

Revision 1681 - Directory Listing
Modified Thu Nov 5 10:12:46 2009 UTC (8 years ago) by lobry
compil R 2.10

Revision 1680 - Directory Listing
Modified Thu Nov 5 10:06:50 2009 UTC (8 years ago) by lobry
licence update

Revision 1679 - Directory Listing
Modified Thu Nov 5 09:55:49 2009 UTC (8 years ago) by lobry
new bib refs

Revision 1678 - Directory Listing
Modified Thu Nov 5 09:55:17 2009 UTC (8 years ago) by lobry
new bib refs

Revision 1677 - Directory Listing
Modified Thu Nov 5 09:54:49 2009 UTC (8 years ago) by lobry
new bib refs

Revision 1676 - Directory Listing
Modified Thu Nov 5 09:46:10 2009 UTC (8 years ago) by lobry
new bib refs

Revision 1675 - Directory Listing
Modified Thu Nov 5 09:00:46 2009 UTC (8 years ago) by lobry
 

Revision 1674 - Directory Listing
Modified Wed Nov 4 17:05:18 2009 UTC (8 years ago) by lobry
extended deleted

Revision 1673 - Directory Listing
Modified Wed Nov 4 17:02:48 2009 UTC (8 years ago) by lobry
extended deleted

Revision 1672 - Directory Listing
Modified Wed Nov 4 17:01:14 2009 UTC (8 years ago) by lobry
extended deleted

Revision 1671 - Directory Listing
Modified Fri Oct 16 15:48:10 2009 UTC (8 years, 1 month ago) by lobry
release 2.0-7 tag

Revision 1670 - Directory Listing
Modified Fri Oct 16 15:30:14 2009 UTC (8 years, 1 month ago) by lobry
typos

Revision 1669 - Directory Listing
Modified Mon Oct 12 16:51:09 2009 UTC (8 years, 1 month ago) by lobry
no more File argument

Revision 1668 - Directory Listing
Modified Mon Oct 12 16:50:44 2009 UTC (8 years, 1 month ago) by lobry
no more File argument

Revision 1667 - Directory Listing
Modified Mon Oct 12 16:50:32 2009 UTC (8 years, 1 month ago) by lobry
no more File argument

Revision 1666 - Directory Listing
Modified Mon Oct 12 16:32:09 2009 UTC (8 years, 1 month ago) by lobry
new function for stutter ratio

Revision 1665 - Directory Listing
Modified Mon Oct 12 16:30:36 2009 UTC (8 years, 1 month ago) by lobry
new function for stutter ratio

Revision 1664 - Directory Listing
Modified Mon Oct 12 16:30:15 2009 UTC (8 years, 1 month ago) by lobry
new function for stutter ratio

Revision 1663 - Directory Listing
Modified Mon Oct 12 08:55:46 2009 UTC (8 years, 1 month ago) by lobry
 

Revision 1662 - Directory Listing
Modified Mon Oct 12 08:54:51 2009 UTC (8 years, 1 month ago) by lobry
 

Revision 1661 - Directory Listing
Modified Mon Oct 12 08:34:30 2009 UTC (8 years, 1 month ago) by lobry
new utility

Revision 1660 - Directory Listing
Modified Mon Oct 12 08:34:09 2009 UTC (8 years, 1 month ago) by lobry
new utility

Revision 1659 - Directory Listing
Modified Mon Oct 12 08:33:55 2009 UTC (8 years, 1 month ago) by lobry
new utility

Revision 1658 - Directory Listing
Modified Sun Oct 11 17:45:32 2009 UTC (8 years, 1 month ago) by lobry
remove the \v space in last example

Revision 1657 - Directory Listing
Modified Fri Oct 9 06:28:13 2009 UTC (8 years, 1 month ago) by lobry
 

Revision 1656 - Directory Listing
Modified Fri Oct 9 06:24:46 2009 UTC (8 years, 1 month ago) by lobry
new ylim

Revision 1655 - Directory Listing
Modified Fri Oct 9 06:23:09 2009 UTC (8 years, 1 month ago) by lobry
new ylim

Revision 1654 - Directory Listing
Modified Fri Oct 9 06:19:42 2009 UTC (8 years, 1 month ago) by lobry
baseline and +1 shift corrected

Revision 1653 - Directory Listing
Modified Fri Oct 9 06:11:48 2009 UTC (8 years, 1 month ago) by lobry
baseline and +1 shift corrected

Revision 1652 - Directory Listing
Modified Tue Sep 22 13:13:37 2009 UTC (8 years, 1 month ago) by lobry
 

Revision 1651 - Directory Listing
Modified Tue Sep 22 13:10:31 2009 UTC (8 years, 1 month ago) by lobry
 

Revision 1650 - Directory Listing
Modified Tue Sep 22 13:10:18 2009 UTC (8 years, 1 month ago) by lobry
 

Revision 1649 - Directory Listing
Modified Tue Sep 22 13:10:04 2009 UTC (8 years, 1 month ago) by lobry
 

Revision 1648 - Directory Listing
Modified Thu Sep 17 11:17:41 2009 UTC (8 years, 2 months ago) by lobry
release 2.0-6

Revision 1647 - Directory Listing
Modified Wed Sep 9 16:36:14 2009 UTC (8 years, 2 months ago) by lobry
typo

Revision 1646 - Directory Listing
Modified Wed Sep 9 16:28:24 2009 UTC (8 years, 2 months ago) by lobry
ComPairWise problem fixed

Revision 1645 - Directory Listing
Modified Sun Sep 6 09:14:12 2009 UTC (8 years, 2 months ago) by lobry
new example

Revision 1644 - Directory Listing
Modified Sat Sep 5 19:11:14 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1643 - Directory Listing
Modified Sat Sep 5 19:08:41 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1642 - Directory Listing
Modified Sat Sep 5 19:08:20 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1641 - Directory Listing
Modified Thu Sep 3 15:58:49 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1640 - Directory Listing
Modified Thu Sep 3 15:54:42 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1639 - Directory Listing
Modified Thu Sep 3 12:35:43 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1638 - Directory Listing
Modified Thu Sep 3 12:25:26 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1637 - Directory Listing
Modified Thu Sep 3 12:24:56 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1636 - Directory Listing
Modified Thu Sep 3 12:22:25 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1635 - Directory Listing
Modified Thu Sep 3 09:01:39 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1634 - Directory Listing
Modified Thu Sep 3 08:49:55 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1633 - Directory Listing
Modified Thu Sep 3 08:49:37 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1632 - Directory Listing
Modified Wed Aug 26 12:31:03 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1631 - Directory Listing
Modified Wed Aug 26 12:30:32 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1630 - Directory Listing
Modified Wed Aug 26 12:25:25 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1629 - Directory Listing
Modified Wed Aug 26 12:21:46 2009 UTC (8 years, 2 months ago) by lobry
new example

Revision 1628 - Directory Listing
Modified Wed Aug 26 12:20:02 2009 UTC (8 years, 2 months ago) by lobry
new data

Revision 1627 - Directory Listing
Modified Wed Aug 26 09:47:23 2009 UTC (8 years, 2 months ago) by lobry
itemize -> describe 

Revision 1626 - Directory Listing
Modified Wed Aug 26 09:38:58 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1625 - Directory Listing
Modified Wed Aug 26 09:36:47 2009 UTC (8 years, 2 months ago) by lobry
 

Revision 1624 - Directory Listing
Modified Fri Jul 17 21:47:42 2009 UTC (8 years, 4 months ago) by lobry
new functions swap and move

Revision 1623 - Directory Listing
Modified Fri Jul 17 21:46:40 2009 UTC (8 years, 4 months ago) by lobry
new function

Revision 1622 - Directory Listing
Modified Fri Jul 17 21:46:01 2009 UTC (8 years, 4 months ago) by lobry
new function

Revision 1621 - Directory Listing
Modified Fri Jul 17 21:45:06 2009 UTC (8 years, 4 months ago) by lobry
new function

Revision 1620 - Directory Listing
Modified Fri Jul 17 21:44:21 2009 UTC (8 years, 4 months ago) by lobry
new function

Revision 1619 - Directory Listing
Modified Tue Jun 30 08:06:34 2009 UTC (8 years, 4 months ago) by lobry
new version

Revision 1618 - Directory Listing
Modified Wed Jun 24 09:07:29 2009 UTC (8 years, 4 months ago) by lobry
 

Revision 1617 - Directory Listing
Modified Wed Jun 24 09:06:59 2009 UTC (8 years, 4 months ago) by lobry
new quality test with test file with trailling tabulations

Revision 1616 - Directory Listing
Modified Wed Jun 24 09:06:14 2009 UTC (8 years, 4 months ago) by lobry
new quality check with test file for non constant number of tabs

Revision 1615 - Directory Listing
Modified Wed Jun 24 09:04:46 2009 UTC (8 years, 4 months ago) by lobry
fixing a bug with trailling tabulations

Revision 1614 - Directory Listing
Modified Wed Jun 24 09:03:58 2009 UTC (8 years, 4 months ago) by lobry
two new test files

Revision 1613 - Directory Listing
Modified Wed Jun 17 14:57:32 2009 UTC (8 years, 5 months ago) by lobry
deletion of runs of tabulations

Revision 1612 - Directory Listing
Modified Wed Jun 17 14:56:16 2009 UTC (8 years, 5 months ago) by lobry
deletion of runs of tabulations

Revision 1611 - Directory Listing
Modified Mon Apr 27 19:43:00 2009 UTC (8 years, 6 months ago) by lobry
2.0-4 tag

Revision 1609 - Directory Listing
Modified Mon Apr 27 07:19:19 2009 UTC (8 years, 6 months ago) by lobry
new doc

Revision 1608 - Directory Listing
Modified Mon Apr 27 04:40:51 2009 UTC (8 years, 6 months ago) by lobry
date update

Revision 1607 - Directory Listing
Modified Sun Apr 26 18:17:18 2009 UTC (8 years, 6 months ago) by lobry
new kaks behaviour

Revision 1606 - Directory Listing
Modified Sun Apr 26 18:16:29 2009 UTC (8 years, 6 months ago) by lobry
new kaks behaviour

Revision 1605 - Directory Listing
Modified Sun Apr 26 11:56:02 2009 UTC (8 years, 6 months ago) by lobry
 

Revision 1604 - Directory Listing
Modified Sun Apr 26 11:51:35 2009 UTC (8 years, 6 months ago) by lobry
new check with Darren Obbard test file

Revision 1603 - Directory Listing
Modified Sun Apr 26 11:49:05 2009 UTC (8 years, 6 months ago) by lobry
now any non ACGT base in a codon force it to a gap codon ---

Revision 1602 - Directory Listing
Modified Sun Apr 26 11:46:35 2009 UTC (8 years, 6 months ago) by lobry
new test file for kaks function

Revision 1599 - Directory Listing
Modified Sun Apr 26 08:53:51 2009 UTC (8 years, 6 months ago) by lobry
add new version

Revision 1598 - Directory Listing
Modified Sun Apr 26 08:52:15 2009 UTC (8 years, 6 months ago) by lobry
delete old version

Revision 1597 - Directory Listing
Modified Sun Apr 26 08:50:53 2009 UTC (8 years, 6 months ago) by lobry
update xtable generated tables

Revision 1596 - Directory Listing
Modified Thu Apr 23 19:09:43 2009 UTC (8 years, 6 months ago) by lobry
 

Revision 1595 - Directory Listing
Modified Thu Apr 23 19:09:02 2009 UTC (8 years, 6 months ago) by lobry
 

Revision 1594 - Directory Listing
Modified Thu Apr 23 18:24:12 2009 UTC (8 years, 6 months ago) by lobry
doc polish after Darren Obbard post

Revision 1593 - Directory Listing
Modified Thu Apr 23 16:45:50 2009 UTC (8 years, 6 months ago) by lobry
more explicit error message and REprintf instead of error

Revision 1592 - Directory Listing
Modified Thu Apr 23 11:13:42 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0

Revision 1591 - Directory Listing
Modified Thu Apr 23 11:01:09 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0

Revision 1590 - Directory Listing
Modified Thu Apr 23 10:58:32 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0

Revision 1589 - Directory Listing
Modified Thu Apr 23 10:31:04 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0

Revision 1588 - Directory Listing
Modified Thu Apr 23 10:29:28 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0 compilation

Revision 1587 - Directory Listing
Modified Thu Apr 23 09:59:25 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0 compil

Revision 1586 - Directory Listing
Modified Thu Apr 23 09:56:46 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0 compilation

Revision 1585 - Directory Listing
Modified Thu Apr 23 09:55:42 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0 compilation

Revision 1584 - Directory Listing
Modified Thu Apr 23 09:52:30 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0 compilation

Revision 1583 - Directory Listing
Modified Thu Apr 23 09:51:55 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0 compilation

Revision 1582 - Directory Listing
Modified Thu Apr 23 09:38:12 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0 compilation

Revision 1581 - Directory Listing
Modified Thu Apr 23 09:29:41 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0 compilation

Revision 1580 - Directory Listing
Modified Thu Apr 23 09:27:39 2009 UTC (8 years, 6 months ago) by lobry
R 2.9.0 compilation

Revision 1579 - Directory Listing
Modified Thu Apr 23 08:58:39 2009 UTC (8 years, 6 months ago) by lobry
compilation R 2.9.0

Revision 1578 - Directory Listing
Modified Thu Apr 23 08:57:43 2009 UTC (8 years, 6 months ago) by lobry
compilation R 2.9.0

Revision 1577 - Directory Listing
Modified Thu Apr 23 08:49:46 2009 UTC (8 years, 6 months ago) by lobry
new libraries used in cover.rnw

Revision 1576 - Directory Listing
Modified Thu Apr 23 08:48:38 2009 UTC (8 years, 6 months ago) by lobry
scriptsize

Revision 1575 - Directory Listing
Modified Thu Apr 23 08:42:28 2009 UTC (8 years, 6 months ago) by lobry
add missing newline at end of file

Revision 1574 - Directory Listing
Modified Thu Apr 23 08:35:10 2009 UTC (8 years, 6 months ago) by lobry
Since 2.9.0 Sweave has changed and we need to go back one frame further to get the name of the file sweaved

Revision 1573 - Directory Listing
Modified Wed Apr 22 14:06:34 2009 UTC (8 years, 7 months ago) by lobry
small characters for sessionInfo

Revision 1572 - Directory Listing
Modified Tue Mar 31 15:57:58 2009 UTC (8 years, 7 months ago) by lobry
more tolerance to extra columns in data

Revision 1571 - Directory Listing
Modified Tue Mar 31 15:51:08 2009 UTC (8 years, 7 months ago) by lobry
more tolerance to extra columns in data

Revision 1570 - Directory Listing
Modified Mon Mar 30 18:40:46 2009 UTC (8 years, 7 months ago) by lobry
typo

Revision 1569 - Directory Listing
Modified Mon Mar 30 18:39:56 2009 UTC (8 years, 7 months ago) by lobry
Yann LESECQUE bug fix

Revision 1568 - Directory Listing
Modified Mon Mar 30 18:38:43 2009 UTC (8 years, 7 months ago) by lobry
Yann LESECQUE bug fix

Revision 1567 - Directory Listing
Modified Wed Mar 11 10:08:24 2009 UTC (8 years, 8 months ago) by lobry
new utility functions

Revision 1566 - Directory Listing
Modified Wed Mar 11 10:02:26 2009 UTC (8 years, 8 months ago) by lobry
new utility functions

Revision 1565 - Directory Listing
Modified Wed Mar 11 10:01:12 2009 UTC (8 years, 8 months ago) by lobry
new utility functions

Revision 1564 - Directory Listing
Modified Wed Mar 11 09:46:05 2009 UTC (8 years, 8 months ago) by lobry
example files for readBins and readPanel functions

Revision 1563 - Directory Listing
Modified Mon Mar 9 19:09:24 2009 UTC (8 years, 8 months ago) by lobry
peakabif now returns more info

Revision 1562 - Directory Listing
Modified Mon Mar 9 18:48:03 2009 UTC (8 years, 8 months ago) by lobry
peakabif now returns more info

Revision 1561 - Directory Listing
Modified Mon Mar 9 18:46:28 2009 UTC (8 years, 8 months ago) by lobry
peakabif now returns more info

Revision 1560 - Directory Listing
Modified Mon Feb 16 19:56:44 2009 UTC (8 years, 9 months ago) by lobry
doubling the double backslashes

Revision 1558 - Directory Listing
Modified Thu Feb 12 15:20:10 2009 UTC (8 years, 9 months ago) by lobry
new split argument

Revision 1557 - Directory Listing
Modified Thu Feb 12 15:19:27 2009 UTC (8 years, 9 months ago) by lobry
new split argument

Revision 1556 - Directory Listing
Modified Thu Feb 12 12:09:00 2009 UTC (8 years, 9 months ago) by lobry
new ref for utility function al2bp

Revision 1555 - Directory Listing
Modified Thu Feb 12 12:07:44 2009 UTC (8 years, 9 months ago) by lobry
new utility function al2bp

Revision 1554 - Directory Listing
Modified Thu Feb 12 12:06:44 2009 UTC (8 years, 9 months ago) by lobry
new utility function al2bp

Revision 1553 - Directory Listing
Modified Thu Feb 12 12:05:59 2009 UTC (8 years, 9 months ago) by lobry
new utility function al2bp

Revision 1552 - Directory Listing
Modified Fri Feb 6 12:58:45 2009 UTC (8 years, 9 months ago) by lobry
release 2.0-3

Revision 1551 - Directory Listing
Modified Wed Feb 4 15:32:16 2009 UTC (8 years, 9 months ago) by lobry
now plotabif returns its local graphical parameter settings

Revision 1550 - Directory Listing
Modified Wed Feb 4 15:31:10 2009 UTC (8 years, 9 months ago) by lobry
now plotabif returns its local graphical parameter settings

Revision 1549 - Directory Listing
Modified Wed Feb 4 14:03:11 2009 UTC (8 years, 9 months ago) by lobry
new ABIF format related functions

Revision 1548 - Directory Listing
Modified Wed Feb 4 13:58:36 2009 UTC (8 years, 9 months ago) by lobry
New function to plot allelic ladder in ABIF data

Revision 1547 - Directory Listing
Modified Wed Feb 4 13:57:48 2009 UTC (8 years, 9 months ago) by lobry
New function to plot allelic ladder in ABIF data

Revision 1546 - Directory Listing
Modified Wed Feb 4 13:56:30 2009 UTC (8 years, 9 months ago) by lobry
Function to locate peaks in ABIF data

Revision 1545 - Directory Listing
Modified Wed Feb 4 13:55:38 2009 UTC (8 years, 9 months ago) by lobry
Function to locate peaks in ABIF data

Revision 1544 - Directory Listing
Modified Wed Feb 4 13:54:23 2009 UTC (8 years, 9 months ago) by lobry
new plot function for ABIF data

Revision 1543 - Directory Listing
Modified Wed Feb 4 13:53:31 2009 UTC (8 years, 9 months ago) by lobry
new plot function for ABIF data

Revision 1542 - Directory Listing
Modified Wed Feb 4 12:29:51 2009 UTC (8 years, 9 months ago) by lobry
extra allele 49.2 deleted

Revision 1540 - Directory Listing
Modified Fri Jan 23 17:59:25 2009 UTC (8 years, 9 months ago) by lobry
new STR raw data

Revision 1539 - Directory Listing
Modified Fri Jan 23 17:54:40 2009 UTC (8 years, 9 months ago) by lobry
new STR raw data

Revision 1538 - Directory Listing
Modified Fri Jan 23 17:53:14 2009 UTC (8 years, 9 months ago) by lobry
new STR raw data

Revision 1537 - Directory Listing
Modified Fri Jan 23 17:51:32 2009 UTC (8 years, 9 months ago) by lobry
quality check

Revision 1536 - Directory Listing
Modified Fri Jan 23 08:56:39 2009 UTC (8 years, 9 months ago) by lobry
extra space deleted

Revision 1535 - Directory Listing
Modified Fri Jan 23 00:17:19 2009 UTC (8 years, 9 months ago) by lobry
new dataset identifiler

Revision 1534 - Directory Listing
Modified Fri Jan 23 00:16:24 2009 UTC (8 years, 9 months ago) by lobry
new dataset identifiler

Revision 1533 - Directory Listing
Modified Fri Jan 23 00:15:24 2009 UTC (8 years, 9 months ago) by lobry
new dataset identifiler

Revision 1532 - Directory Listing
Modified Thu Jan 22 19:04:48 2009 UTC (8 years, 9 months ago) by lobry
new dataset GS500LIZ

Revision 1531 - Directory Listing
Modified Thu Jan 22 19:02:45 2009 UTC (8 years, 9 months ago) by lobry
new dataset GS500LIZ

Revision 1530 - Directory Listing
Modified Thu Jan 22 19:01:29 2009 UTC (8 years, 9 months ago) by lobry
new dataset GS500LIZ

Revision 1529 - Directory Listing
Modified Wed Jan 21 09:24:23 2009 UTC (8 years, 10 months ago) by lobry
OK compil 2.8.1

Revision 1528 - Directory Listing
Modified Wed Jan 21 09:22:27 2009 UTC (8 years, 10 months ago) by lobry
file name changed to fit fct name

Revision 1527 - Directory Listing
Modified Wed Jan 21 07:12:32 2009 UTC (8 years, 10 months ago) by lobry
warnings gerated when reading string with internal null character are now suppressed

Revision 1526 - Directory Listing
Modified Wed Jan 21 06:58:59 2009 UTC (8 years, 10 months ago) by lobry
keyword deleted

Revision 1525 - Directory Listing
Modified Wed Jan 21 06:56:43 2009 UTC (8 years, 10 months ago) by lobry
code was missing

Revision 1524 - Directory Listing
Modified Wed Jan 21 06:54:59 2009 UTC (8 years, 10 months ago) by lobry
enumerate was missing

Revision 1523 - Directory Listing
Modified Wed Jan 21 06:53:31 2009 UTC (8 years, 10 months ago) by lobry
enumerate was missing

Revision 1522 - Directory Listing
Modified Wed Jan 21 06:51:45 2009 UTC (8 years, 10 months ago) by lobry
enumerate was missing

Revision 1521 - Directory Listing
Modified Wed Jan 21 06:50:04 2009 UTC (8 years, 10 months ago) by lobry
enumerate was missing

Revision 1520 - Directory Listing
Modified Wed Jan 21 06:48:36 2009 UTC (8 years, 10 months ago) by lobry
enumerate was missing

Revision 1519 - Directory Listing
Modified Wed Jan 21 06:42:13 2009 UTC (8 years, 10 months ago) by lobry
enumerate was missing

Revision 1518 - Directory Listing
Modified Wed Jan 21 06:39:08 2009 UTC (8 years, 10 months ago) by lobry
wrongly placed curly brace fixed

Revision 1517 - Directory Listing
Modified Mon Jan 19 17:18:57 2009 UTC (8 years, 10 months ago) by lobry
why the abif folder was added, a brief explanation

Revision 1516 - Directory Listing
Modified Mon Jan 19 17:06:14 2009 UTC (8 years, 10 months ago) by lobry
example files for quality check of read.abif() function

Revision 1515 - Directory Listing
Modified Sat Dec 13 20:19:17 2008 UTC (8 years, 11 months ago) by lobry
2.0-2 version

Revision 1514 - Directory Listing
Modified Fri Dec 12 14:06:44 2008 UTC (8 years, 11 months ago) by lobry
 

Revision 1513 - Directory Listing
Modified Fri Dec 12 13:59:15 2008 UTC (8 years, 11 months ago) by lobry
 

Revision 1512 - Directory Listing
Modified Fri Dec 12 13:56:34 2008 UTC (8 years, 11 months ago) by lobry
 

Revision 1511 - Directory Listing
Modified Fri Dec 12 13:53:22 2008 UTC (8 years, 11 months ago) by lobry
 

Revision 1510 - Directory Listing
Modified Fri Dec 12 11:51:16 2008 UTC (8 years, 11 months ago) by lobry
deletion of the itemize in the argument section

Revision 1509 - Directory Listing
Modified Fri Dec 12 11:49:25 2008 UTC (8 years, 11 months ago) by lobry
deletion of the itemize in the argument section

Revision 1508 - Directory Listing
Modified Fri Dec 12 10:33:46 2008 UTC (8 years, 11 months ago) by lobry
change default for extended argument to avoid warnings

Revision 1507 - Directory Listing
Modified Fri Dec 12 10:29:59 2008 UTC (8 years, 11 months ago) by lobry
change default for extended argument to avoid warnings

Revision 1506 - Directory Listing
Modified Fri Dec 12 10:26:33 2008 UTC (8 years, 11 months ago) by lobry
change default for extended argument to avoid warnings

Revision 1505 - Directory Listing
Modified Mon Dec 8 19:03:25 2008 UTC (8 years, 11 months ago) by lobry
deleting empty details section

Revision 1504 - Directory Listing
Modified Mon Nov 3 17:34:29 2008 UTC (9 years ago) by lobry
compilation under R.2.8.0

Revision 1503 - Directory Listing
Modified Mon Nov 3 10:38:26 2008 UTC (9 years ago) by lobry
new function read.abif

Revision 1502 - Directory Listing
Modified Mon Nov 3 10:37:58 2008 UTC (9 years ago) by lobry
new function read.abif

Revision 1501 - Directory Listing
Modified Mon Nov 3 10:37:37 2008 UTC (9 years ago) by lobry
new function read.abif

Revision 1500 - Directory Listing
Modified Tue Oct 28 09:57:35 2008 UTC (9 years ago) by lobry
version++

Revision 1498 - Directory Listing
Modified Sun Oct 26 18:45:55 2008 UTC (9 years ago) by lobry
new manual 2.0.0

Revision 1497 - Directory Listing
Modified Sun Oct 26 18:42:52 2008 UTC (9 years ago) by lobry
new manual 2.0.0

Revision 1496 - Directory Listing
Modified Sun Oct 26 18:39:22 2008 UTC (9 years ago) by lobry
R 2.8.0

Revision 1495 - Directory Listing
Modified Sun Oct 26 18:25:43 2008 UTC (9 years ago) by lobry
generic print for qaw

Revision 1494 - Directory Listing
Modified Sun Oct 26 18:14:47 2008 UTC (9 years ago) by lobry
2008-10-26 time tag

Revision 1493 - Directory Listing
Modified Sun Oct 26 18:05:08 2008 UTC (9 years ago) by lobry
R 2.8.0

Revision 1492 - Directory Listing
Modified Sun Oct 26 18:04:03 2008 UTC (9 years ago) by lobry
R 2.8.0

Revision 1491 - Directory Listing
Modified Sun Oct 26 18:03:14 2008 UTC (9 years ago) by lobry
R 2.8.0

Revision 1490 - Directory Listing
Modified Sun Oct 26 18:02:11 2008 UTC (9 years ago) by lobry
no more subsections

Revision 1489 - Directory Listing
Modified Sun Oct 26 18:00:43 2008 UTC (9 years ago) by lobry
R 2.8.0

Revision 1488 - Directory Listing
Modified Sun Oct 26 17:56:21 2008 UTC (9 years ago) by lobry
delete return that was generating empty page in final document

Revision 1487 - Directory Listing
Modified Sun Oct 26 17:36:07 2008 UTC (9 years ago) by lobry
R 2.8.0

Revision 1486 - Directory Listing
Modified Sun Oct 26 17:35:07 2008 UTC (9 years ago) by lobry
new version

Revision 1485 - Directory Listing
Modified Sun Oct 26 17:33:45 2008 UTC (9 years ago) by lobry
R 2.8.0

Revision 1484 - Directory Listing
Modified Sun Oct 26 17:31:30 2008 UTC (9 years ago) by lobry
R 2.8.0

Revision 1483 - Directory Listing
Modified Sun Oct 26 17:30:17 2008 UTC (9 years ago) by lobry
R 2.8.0

Revision 1482 - Directory Listing
Modified Sun Oct 26 17:29:24 2008 UTC (9 years ago) by lobry
R 2.8.0

Revision 1481 - Directory Listing
Modified Sun Oct 26 17:27:12 2008 UTC (9 years ago) by lobry
new chapter about RISA in silico added (draft)

Revision 1480 - Directory Listing
Modified Sun Oct 26 17:23:50 2008 UTC (9 years ago) by lobry
new chapter about RISA in silico added (draft)

Revision 1479 - Directory Listing
Modified Sun Oct 26 17:18:27 2008 UTC (9 years ago) by lobry
in code chunk getdatafomrnsemble evaluation should be TRUE by default on repository

Revision 1478 - Directory Listing
Modified Sun Oct 26 16:57:41 2008 UTC (9 years ago) by lobry
I have added a memo paragraph at the top

Revision 1477 - Directory Listing
Modified Sun Oct 26 16:47:28 2008 UTC (9 years ago) by lobry
Path to seqinr dev version has changed since migration to R-forge

Revision 1476 - Directory Listing
Modified Sun Oct 26 16:36:28 2008 UTC (9 years ago) by lobry
R 2.8.0

Revision 1475 - Directory Listing
Modified Mon Oct 20 15:37:52 2008 UTC (9 years, 1 month ago) by lobry
 

Revision 1474 - Directory Listing
Modified Sun Oct 12 08:29:25 2008 UTC (9 years, 1 month ago) by lobry
print.qaw has its own Rd file now

Revision 1473 - Directory Listing
Modified Sat Oct 11 16:59:30 2008 UTC (9 years, 1 month ago) by lobry
class qaw has gained a generic print method

Revision 1472 - Directory Listing
Modified Sat Oct 11 16:54:29 2008 UTC (9 years, 1 month ago) by lobry
class qaw has gained a generic print method

Revision 1471 - Directory Listing
Modified Sat Oct 11 16:52:56 2008 UTC (9 years, 1 month ago) by lobry
class qaw has gained a generic print method

Revision 1470 - Directory Listing
Modified Sat Oct 11 16:50:24 2008 UTC (9 years, 1 month ago) by lobry
updating new chapter

Revision 1469 - Directory Listing
Modified Sat Oct 11 16:49:39 2008 UTC (9 years, 1 month ago) by lobry
updating new chapter

Revision 1468 - Directory Listing
Modified Sat Oct 11 13:01:18 2008 UTC (9 years, 1 month ago) by lobry
query now allows a missing listname argument

Revision 1467 - Directory Listing
Modified Sat Oct 11 12:58:49 2008 UTC (9 years, 1 month ago) by lobry
query now allows a missing listname argument

Revision 1466 - Directory Listing
Modified Thu Oct 9 08:12:17 2008 UTC (9 years, 1 month ago) by lobry
protect query with quotes

Revision 1465 - Directory Listing
Modified Wed Oct 8 19:07:55 2008 UTC (9 years, 1 month ago) by lobry
we have moved to R-forge

Revision 1464 - Directory Listing
Modified Wed Oct 8 18:59:31 2008 UTC (9 years, 1 month ago) by lobry
backward compatibility patch for autosocket

Revision 1463 - Directory Listing
Modified Wed Oct 8 18:42:59 2008 UTC (9 years, 1 month ago) by lobry
backward compatibility patch for outdated R version

Revision 1462 - Directory Listing
Modified Wed Oct 8 08:23:52 2008 UTC (9 years, 1 month ago) by lobry
new chapter about making RISA in silico with seqinR

Revision 1461 - Directory Listing
Modified Wed Oct 8 08:21:49 2008 UTC (9 years, 1 month ago) by lobry
figure for RISA

Revision 1460 - Directory Listing
Modified Wed Oct 8 08:06:48 2008 UTC (9 years, 1 month ago) by lobry
path fix

Revision 1459 - Directory Listing
Modified Wed Oct 8 08:04:28 2008 UTC (9 years, 1 month ago) by lobry
biblio update

Revision 1458 - Directory Listing
Modified Thu Sep 11 09:31:37 2008 UTC (9 years, 2 months ago) by simonpenel
More description for dist.alignment.Rd

Revision 1455 - Directory Listing
Modified Wed Aug 27 08:51:15 2008 UTC (9 years, 2 months ago) by simonpenel
New seqinr_1_1-7.pdf

Revision 1454 - Directory Listing
Modified Wed Aug 27 08:50:20 2008 UTC (9 years, 2 months ago) by simonpenel
Temporary suppression of pdf

Revision 1452 - Directory Listing
Modified Wed Aug 20 15:16:16 2008 UTC (9 years, 3 months ago) by lobry
we start at 2.0.0 since R-forge migration

Revision 1447 - Directory Listing
Modified Fri Aug 1 08:38:07 2008 UTC (9 years, 3 months ago) by simonpenel
Copied from: branches/seqinr_cran/pkg revision 1445


Revision 1444 - Directory Listing
Modified Tue Jul 29 15:56:28 2008 UTC (9 years, 3 months ago) by penel
Original Path: branches/seqinr_cran/pkg
Copied from: branches/seqinr_cran/seqinr revision 1443
renome seqinr en pkg

Revision 1442 - Directory Listing
Modified Mon Jul 28 10:49:02 2008 UTC (9 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1441 - Directory Listing
Modified Mon Jul 28 10:44:05 2008 UTC (9 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
kurt request

Revision 1440 - Directory Listing
Modified Mon Jul 28 10:43:06 2008 UTC (9 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
28-JUL-2008

Revision 1439 - Directory Listing
Modified Mon Jul 28 10:32:22 2008 UTC (9 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1438 - Directory Listing
Modified Mon Jul 28 09:20:25 2008 UTC (9 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1437 - Directory Listing
Modified Thu Jul 17 12:24:14 2008 UTC (9 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
socket -> sockconn

Revision 1436 - Directory Listing
Modified Thu Jul 17 09:24:08 2008 UTC (9 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1435 - Directory Listing
Modified Thu Jul 10 16:03:40 2008 UTC (9 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1434 - Directory Listing
Modified Tue Jul 8 13:36:58 2008 UTC (9 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1433 - Directory Listing
Modified Tue Jul 8 13:31:54 2008 UTC (9 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1432 - Directory Listing
Modified Sun Jun 29 14:42:09 2008 UTC (9 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1431 - Directory Listing
Modified Sun Jun 29 14:40:10 2008 UTC (9 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more arguments

Revision 1430 - Directory Listing
Modified Wed Jun 18 06:24:35 2008 UTC (9 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1429 - Directory Listing
Modified Sat Jun 7 17:14:19 2008 UTC (9 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
PAUP is commercial

Revision 1428 - Directory Listing
Modified Sat Jun 7 15:55:31 2008 UTC (9 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1427 - Directory Listing
Modified Sat Jun 7 10:00:23 2008 UTC (9 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1426 - Directory Listing
Modified Sat Jun 7 09:48:25 2008 UTC (9 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
NEXUS link info

Revision 1425 - Directory Listing
Modified Fri Jun 6 14:41:46 2008 UTC (9 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1424 - Directory Listing
Modified Fri Jun 6 13:37:06 2008 UTC (9 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1423 - Directory Listing
Modified Fri Jun 6 12:23:25 2008 UTC (9 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
unix-like carriage returns in file

Revision 1422 - Directory Listing
Modified Thu Jun 5 19:07:59 2008 UTC (9 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1421 - Directory Listing
Modified Thu Jun 5 17:00:33 2008 UTC (9 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1420 - Directory Listing
Modified Wed Jun 4 17:09:39 2008 UTC (9 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1419 - Directory Listing
Modified Sat May 24 16:53:01 2008 UTC (9 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-7

Revision 1418 - Directory Listing
Modified Mon May 19 05:08:34 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1417 - Directory Listing
Modified Sun May 18 10:55:28 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1416 - Directory Listing
Modified Mon May 12 17:12:07 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
12-may-2008

Revision 1415 - Directory Listing
Modified Mon May 12 17:10:01 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1414 - Directory Listing
Modified Mon May 12 16:37:10 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
tseries

Revision 1413 - Directory Listing
Modified Mon May 12 16:32:46 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1412 - Directory Listing
Modified Mon May 12 16:23:37 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1411 - Directory Listing
Modified Mon May 12 16:14:48 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1410 - Directory Listing
Modified Mon May 12 16:09:04 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1409 - Directory Listing
Modified Mon May 12 15:56:09 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1408 - Directory Listing
Modified Mon May 12 15:43:33 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1407 - Directory Listing
Modified Mon May 12 15:05:47 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
single dontrun

Revision 1406 - Directory Listing
Modified Mon May 12 14:55:44 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1405 - Directory Listing
Modified Mon May 12 14:35:44 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
do not close all connections

Revision 1404 - Directory Listing
Modified Mon May 12 14:02:20 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1403 - Directory Listing
Modified Mon May 12 13:36:10 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1402 - Directory Listing
Modified Mon May 12 13:28:53 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
bug R 2.8.0

Revision 1401 - Directory Listing
Modified Mon May 12 13:11:02 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
fix bug for R 2.8.0

Revision 1400 - Directory Listing
Modified Mon May 12 11:02:33 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
bug Mukherjee

Revision 1399 - Directory Listing
Modified Mon May 12 10:37:56 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
| -> ||

Revision 1398 - Directory Listing
Modified Mon May 12 10:02:43 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
file.choose

Revision 1397 - Directory Listing
Modified Mon May 12 09:45:53 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more info on file specification

Revision 1396 - Directory Listing
Modified Mon May 12 09:24:47 2008 UTC (9 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
fix bug Indranuj Mukherjee

Revision 1395 - Directory Listing
Modified Wed Apr 2 16:51:24 2008 UTC (9 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1394 - Directory Listing
Modified Sat Mar 15 11:02:40 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
patch bckwd comp

Revision 1393 - Directory Listing
Modified Sat Mar 15 10:43:17 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1392 - Directory Listing
Modified Sat Mar 15 10:14:31 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
suggestion CG

Revision 1391 - Directory Listing
Modified Sat Mar 15 10:02:43 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
modif suggestion CG

Revision 1390 - Directory Listing
Modified Sat Mar 15 08:39:55 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
simplification for freq TRUE

Revision 1389 - Directory Listing
Modified Fri Mar 7 13:40:48 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
less space in code chunks

Revision 1388 - Directory Listing
Modified Wed Mar 5 16:18:10 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1387 - Directory Listing
Modified Tue Mar 4 10:32:00 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1386 - Directory Listing
Modified Sun Mar 2 14:25:09 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1385 - Directory Listing
Modified Sun Mar 2 11:54:00 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1384 - Directory Listing
Modified Sat Mar 1 20:39:29 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no more minitoc

Revision 1383 - Directory Listing
Modified Sat Mar 1 10:32:35 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1382 - Directory Listing
Modified Sat Mar 1 10:25:20 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
two new args

Revision 1381 - Directory Listing
Modified Sat Mar 1 10:24:24 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
two new args and a sanity check

Revision 1380 - Directory Listing
Modified Sat Mar 1 10:23:41 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
sanity check for reverse.align

Revision 1379 - Directory Listing
Modified Sun Feb 24 16:42:46 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1378 - Directory Listing
Modified Sun Feb 24 16:42:28 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
less material

Revision 1377 - Directory Listing
Modified Sun Feb 24 16:08:47 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
query language has its own chapter now

Revision 1376 - Directory Listing
Modified Sun Feb 24 14:58:04 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
extractses has its own chapter

Revision 1375 - Directory Listing
Modified Sun Feb 24 10:31:14 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1374 - Directory Listing
Modified Sun Feb 24 09:30:42 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
library building

Revision 1373 - Directory Listing
Modified Sun Feb 24 08:54:36 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-6

Revision 1372 - Directory Listing
Modified Sun Feb 24 08:39:49 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
native encoding for choosebank

Revision 1371 - Directory Listing
Modified Sun Feb 24 08:13:33 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
use native encoding

Revision 1370 - Directory Listing
Modified Sun Feb 24 06:31:24 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
prepgetannots

Revision 1369 - Directory Listing
Modified Sat Feb 23 13:30:01 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
add init

Revision 1368 - Directory Listing
Modified Sat Feb 23 13:28:21 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
crossref

Revision 1367 - Directory Listing
Modified Sat Feb 23 13:10:06 2008 UTC (9 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
verbose argument

Revision 1366 - Directory Listing
Modified Sat Feb 16 12:55:04 2008 UTC (9 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new args to choosebank

Revision 1365 - Directory Listing
Modified Sat Feb 16 12:48:06 2008 UTC (9 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more arguments

Revision 1364 - Directory Listing
Modified Fri Feb 15 16:47:18 2008 UTC (9 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new verbose argument

Revision 1363 - Directory Listing
Modified Fri Feb 15 16:46:44 2008 UTC (9 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
verbose argument is now forwarded to clientid

Revision 1362 - Directory Listing
Modified Thu Jan 17 10:49:55 2008 UTC (9 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
circular in count

Revision 1361 - Directory Listing
Modified Thu Jan 17 10:49:31 2008 UTC (9 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
phase -> start

Revision 1360 - Directory Listing
Modified Thu Jan 17 09:11:48 2008 UTC (9 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
frame -> phase

Revision 1359 - Directory Listing
Modified Thu Jan 17 09:11:04 2008 UTC (9 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
for the count function example

Revision 1358 - Directory Listing
Modified Tue Jan 15 17:28:34 2008 UTC (9 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more code documentation

Revision 1357 - Directory Listing
Modified Wed Dec 19 22:09:34 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-6

Revision 1356 - Directory Listing
Modified Mon Dec 17 18:35:21 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1355 - Directory Listing
Modified Sun Dec 16 14:45:09 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
16 Dec 2007

Revision 1354 - Directory Listing
Modified Sun Dec 16 14:44:21 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-5

Revision 1353 - Directory Listing
Modified Sun Dec 16 14:37:11 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1352 - Directory Listing
Modified Sun Dec 16 14:26:24 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
to avoid codetools warning

Revision 1351 - Directory Listing
Modified Sun Dec 16 14:18:30 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
description was missing

Revision 1350 - Directory Listing
Modified Sun Dec 16 14:02:12 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
value was empty, local file for demo, sanity check

Revision 1349 - Directory Listing
Modified Sun Dec 16 14:01:08 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
using a local file for demo

Revision 1348 - Directory Listing
Modified Sun Dec 16 13:44:16 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
for gbk2g2()

Revision 1347 - Directory Listing
Modified Sun Dec 16 13:20:32 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
details section deleted

Revision 1346 - Directory Listing
Modified Sun Dec 16 13:17:08 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
argument section deleted

Revision 1345 - Directory Listing
Modified Sat Dec 15 18:28:59 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
for dia.bactgensize()

Revision 1344 - Directory Listing
Modified Sat Dec 15 18:20:11 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new argument source and references

Revision 1343 - Directory Listing
Modified Sat Dec 15 18:09:46 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new argument source and references

Revision 1342 - Directory Listing
Modified Sat Dec 15 18:09:15 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new argument source

Revision 1341 - Directory Listing
Modified Sat Dec 15 11:40:28 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
maxgensize in dia.bactgensize()

Revision 1340 - Directory Listing
Modified Sat Dec 15 11:39:44 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
gold references

Revision 1339 - Directory Listing
Modified Sat Dec 15 08:34:22 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-5

Revision 1338 - Directory Listing
Modified Sat Dec 8 15:57:54 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-4

Revision 1337 - Directory Listing
Modified Sat Dec 8 15:51:12 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1.4

Revision 1336 - Directory Listing
Modified Sat Dec 8 15:41:10 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
change file name

Revision 1335 - Directory Listing
Modified Sat Dec 8 15:39:31 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
minor fixes

Revision 1334 - Directory Listing
Modified Sat Dec 8 15:13:40 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
modif required by Kurt Hornik

Revision 1333 - Directory Listing
Modified Sat Dec 8 15:11:05 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
simple modif asked by Kurt Hornik

Revision 1332 - Directory Listing
Modified Wed Dec 5 08:43:20 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Simon is an author too

Revision 1331 - Directory Listing
Modified Mon Dec 3 14:06:58 2007 UTC (9 years, 11 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
modif url du site

Revision 1330 - Directory Listing
Modified Mon Dec 3 09:04:43 2007 UTC (9 years, 11 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1329 - Directory Listing
Modified Sun Dec 2 17:17:41 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
forward biblio

Revision 1328 - Directory Listing
Modified Sun Dec 2 17:08:25 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1327 - Directory Listing
Modified Sun Dec 2 16:58:40 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1326 - Directory Listing
Modified Sun Dec 2 16:33:59 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
initial addition

Revision 1325 - Directory Listing
Modified Sun Dec 2 16:33:06 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
removed

Revision 1324 - Directory Listing
Modified Sun Dec 2 16:31:49 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
parser.socket is now documented

Revision 1323 - Directory Listing
Modified Sun Dec 2 16:31:17 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
deprecated alias deleted

Revision 1322 - Directory Listing
Modified Sun Dec 2 16:28:35 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
deprecated getNumber.socket and getAttributsocket added

Revision 1321 - Directory Listing
Modified Sun Dec 2 16:27:24 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
initial addition

Revision 1320 - Directory Listing
Modified Sun Dec 2 16:25:27 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
most functions have their own file now

Revision 1319 - Directory Listing
Modified Sun Dec 2 16:24:23 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
readAnnots.socket no more exists

Revision 1318 - Directory Listing
Modified Sun Dec 2 16:22:57 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
using gfrag() instead of getSequenceSocket()

Revision 1317 - Directory Listing
Modified Sun Dec 2 16:22:12 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
getKeywordsocket encapsulated

Revision 1316 - Directory Listing
Modified Sun Dec 2 16:21:37 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
getLocationSocket encapsulated

Revision 1315 - Directory Listing
Modified Sun Dec 2 16:21:03 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
getSequenceSocket encapsulated

Revision 1314 - Directory Listing
Modified Sun Dec 2 16:20:17 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
deprecated functions redundant with isenum

Revision 1313 - Directory Listing
Modified Sun Dec 2 16:07:54 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
typo

Revision 1312 - Directory Listing
Modified Sun Dec 2 16:04:39 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new methods and waterabs

Revision 1311 - Directory Listing
Modified Sat Dec 1 18:39:16 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new example

Revision 1310 - Directory Listing
Modified Thu Nov 29 09:24:49 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
typo correction

Revision 1309 - Directory Listing
Modified Tue Nov 27 13:51:21 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1308 - Directory Listing
Modified Tue Nov 27 12:40:42 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1307 - Directory Listing
Modified Mon Nov 26 23:46:46 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new generic/methods scheme

Revision 1306 - Directory Listing
Modified Mon Nov 26 00:11:38 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
readAnnots.socket -> getAnnot.Rd

Revision 1305 - Directory Listing
Modified Mon Nov 26 00:01:46 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1304 - Directory Listing
Modified Sun Nov 25 23:54:17 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
strip.desc

Revision 1303 - Directory Listing
Modified Sun Nov 25 23:23:38 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
getAnnot rewriting

Revision 1302 - Directory Listing
Modified Sun Nov 25 23:11:57 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
example from Biostrings

Revision 1301 - Directory Listing
Modified Sun Nov 25 21:11:18 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
bug fix: tolower does not return a list

Revision 1300 - Directory Listing
Modified Sun Nov 25 20:13:30 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
seqonly argument in read.fasta()

Revision 1299 - Directory Listing
Modified Sun Nov 25 19:50:58 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
seqonly argument

Revision 1298 - Directory Listing
Modified Sun Nov 25 18:45:20 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
perf optimization

Revision 1297 - Directory Listing
Modified Sun Nov 25 17:20:58 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
R_fasta.R -> read.fasta.R

Revision 1296 - Directory Listing
Modified Sun Nov 25 17:18:49 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
stop if no > found

Revision 1295 - Directory Listing
Modified Sun Nov 25 13:58:45 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
sanity check

Revision 1294 - Directory Listing
Modified Sat Nov 24 18:43:05 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
graph added

Revision 1293 - Directory Listing
Modified Sat Nov 24 18:16:44 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
graph polish in nonparastats

Revision 1292 - Directory Listing
Modified Sat Nov 24 18:09:15 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more graph polish

Revision 1291 - Directory Listing
Modified Sat Nov 24 16:39:42 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
graph polish

Revision 1290 - Directory Listing
Modified Sat Nov 24 12:17:24 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
biblio

Revision 1289 - Directory Listing
Modified Fri Nov 23 17:07:47 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1288 - Directory Listing
Modified Fri Nov 23 16:59:28 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Manolo approval

Revision 1287 - Directory Listing
Modified Fri Nov 23 12:24:10 2007 UTC (9 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
benchmark

Revision 1286 - Directory Listing
Modified Wed Nov 21 22:45:54 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
File -> file

Revision 1285 - Directory Listing
Modified Wed Nov 21 22:19:42 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ref added

Revision 1284 - Directory Listing
Modified Wed Nov 21 21:54:39 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1283 - Directory Listing
Modified Wed Nov 21 21:26:21 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1282 - Directory Listing
Modified Wed Nov 21 21:20:34 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
comment lines in FASTA files now supported

Revision 1281 - Directory Listing
Modified Wed Nov 21 21:13:30 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
comment lines in FASTA files now supported

Revision 1280 - Directory Listing
Modified Wed Nov 21 19:57:52 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
typo

Revision 1279 - Directory Listing
Modified Wed Nov 21 19:23:27 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
release 1.1-3

Revision 1278 - Directory Listing
Modified Wed Nov 21 19:19:02 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1277 - Directory Listing
Modified Wed Nov 21 19:06:25 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
bug in title fixed, now ultimate version package number in title

Revision 1276 - Directory Listing
Modified Wed Nov 21 18:52:02 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1275 - Directory Listing
Modified Wed Nov 21 14:56:13 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
m16j dataset

Revision 1274 - Directory Listing
Modified Mon Nov 19 13:11:55 2007 UTC (10 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
modif port

Revision 1273 - Directory Listing
Modified Mon Nov 12 10:01:34 2007 UTC (10 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modification du port : 5558  devient 6667 ( le voisin de la bete)

Revision 1272 - Directory Listing
Modified Fri Nov 9 10:50:54 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Paste -> paste

Revision 1271 - Directory Listing
Modified Wed Nov 7 21:26:06 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
GCpos() and frame

Revision 1270 - Directory Listing
Modified Wed Nov 7 15:09:45 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
NA.GC

Revision 1269 - Directory Listing
Modified Wed Nov 7 14:36:57 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
GC has now its own file

Revision 1268 - Directory Listing
Modified Wed Nov 7 14:36:09 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
forceToLower

Revision 1267 - Directory Listing
Modified Wed Nov 7 14:35:17 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
return error code

Revision 1266 - Directory Listing
Modified Wed Nov 7 12:25:00 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
2.6

Revision 1265 - Directory Listing
Modified Wed Nov 7 12:23:44 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
2.6

Revision 1264 - Directory Listing
Modified Wed Nov 7 12:19:54 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1263 - Directory Listing
Modified Wed Nov 7 11:42:24 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
2.6

Revision 1262 - Directory Listing
Modified Wed Nov 7 11:34:17 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
2.6

Revision 1261 - Directory Listing
Modified Wed Nov 7 11:13:39 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
2.6

Revision 1260 - Directory Listing
Modified Wed Nov 7 11:04:52 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
2.6

Revision 1259 - Directory Listing
Modified Sun Nov 4 18:14:15 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1258 - Directory Listing
Modified Sun Nov 4 18:13:58 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more appli

Revision 1257 - Directory Listing
Modified Sun Nov 4 15:51:24 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1256 - Directory Listing
Modified Sun Nov 4 15:51:08 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
elem stats

Revision 1255 - Directory Listing
Modified Thu Nov 1 09:46:45 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ape problem fixed

Revision 1254 - Directory Listing
Modified Thu Nov 1 09:32:39 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ape2004

Revision 1253 - Directory Listing
Modified Thu Nov 1 08:52:07 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
changes in read.alignment

Revision 1252 - Directory Listing
Modified Thu Nov 1 08:20:17 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
File -> file

Revision 1251 - Directory Listing
Modified Wed Oct 31 14:53:41 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no more duplicated lists on server

Revision 1250 - Directory Listing
Modified Tue Oct 30 16:29:05 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
version qui compile

Revision 1249 - Directory Listing
Modified Tue Oct 30 16:14:08 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
version qui compile

Revision 1248 - Directory Listing
Modified Tue Oct 30 13:59:46 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
printf -> Rprintf

Revision 1247 - Directory Listing
Modified Tue Oct 30 11:09:51 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
socket closed iff error

Revision 1246 - Directory Listing
Modified Tue Oct 30 10:15:16 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
socket connection now closed when just infos are retrieved

Revision 1245 - Directory Listing
Modified Tue Oct 30 07:47:36 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no Rlogo in sections for hyperref package

Revision 1244 - Directory Listing
Modified Mon Oct 29 18:29:06 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
backref = page

Revision 1243 - Directory Listing
Modified Mon Oct 29 18:14:49 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
better *.tex file detection

Revision 1242 - Directory Listing
Modified Mon Oct 29 17:46:19 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1241 - Directory Listing
Modified Mon Oct 29 16:44:33 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1240 - Directory Listing
Modified Mon Oct 29 11:31:42 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
starification

Revision 1239 - Directory Listing
Modified Mon Oct 29 11:22:22 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1238 - Directory Listing
Modified Mon Oct 29 09:49:30 2007 UTC (10 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
Petite modif

Revision 1237 - Directory Listing
Modified Sun Oct 28 17:19:22 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1236 - Directory Listing
Modified Sun Oct 28 09:56:04 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1235 - Directory Listing
Modified Sun Oct 28 09:04:57 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ecoli refs

Revision 1234 - Directory Listing
Modified Sun Oct 28 09:04:33 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more ref

Revision 1233 - Directory Listing
Modified Sat Oct 27 19:14:14 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
moving wondow

Revision 1232 - Directory Listing
Modified Sat Oct 27 17:44:37 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1231 - Directory Listing
Modified Sat Oct 27 08:21:01 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
query_win screenshot

Revision 1230 - Directory Listing
Modified Thu Oct 25 16:28:57 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
acnuc 2007

Revision 1229 - Directory Listing
Modified Thu Oct 25 16:22:23 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
biblio

Revision 1228 - Directory Listing
Modified Thu Oct 25 14:11:47 2007 UTC (10 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
Nettoyage de la doc, changement des path, modif mineures

Revision 1227 - Directory Listing
Modified Wed Oct 24 18:25:13 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
kbd

Revision 1226 - Directory Listing
Modified Wed Oct 24 13:31:04 2007 UTC (10 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
Recuperation d un fichier play de proteines, et construction d une banque ACNUC

Revision 1225 - Directory Listing
Modified Wed Oct 24 08:31:00 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1224 - Directory Listing
Modified Wed Oct 24 07:50:23 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1223 - Directory Listing
Modified Wed Oct 24 07:18:31 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
modlistname = listname

Revision 1222 - Directory Listing
Modified Wed Oct 24 07:17:32 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
modlistname = listname

Revision 1221 - Directory Listing
Modified Tue Oct 23 22:48:55 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1220 - Directory Listing
Modified Tue Oct 23 22:25:48 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1219 - Directory Listing
Modified Tue Oct 23 22:25:11 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
closebank() has now its own file

Revision 1218 - Directory Listing
Modified Tue Oct 23 22:24:09 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
arguments

Revision 1217 - Directory Listing
Modified Tue Oct 23 22:12:28 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
quitacnuc()

Revision 1216 - Directory Listing
Modified Tue Oct 23 22:12:06 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1215 - Directory Listing
Modified Tue Oct 23 22:00:16 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no more call to prep_requete

Revision 1214 - Directory Listing
Modified Tue Oct 23 21:50:10 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
clientid

Revision 1213 - Directory Listing
Modified Tue Oct 23 21:49:23 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
clientid

Revision 1212 - Directory Listing
Modified Tue Oct 23 21:48:10 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
now uses clientid()

Revision 1211 - Directory Listing
Modified Tue Oct 23 21:47:43 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
clientid

Revision 1210 - Directory Listing
Modified Tue Oct 23 21:30:48 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
tag

Revision 1209 - Directory Listing
Modified Tue Oct 23 21:26:17 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
release number line fixed

Revision 1208 - Directory Listing
Modified Tue Oct 23 21:22:23 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
now uses acnucopen()

Revision 1207 - Directory Listing
Modified Tue Oct 23 21:21:52 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
unitary test

Revision 1206 - Directory Listing
Modified Tue Oct 23 20:45:54 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
))

Revision 1205 - Directory Listing
Modified Tue Oct 23 20:43:54 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
\_

Revision 1204 - Directory Listing
Modified Tue Oct 23 20:41:09 2007 UTC (10 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1203 - Directory Listing
Modified Tue Oct 23 19:36:04 2007 UTC (10 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
Recuperation des outils ACNUC

Revision 1202 - Directory Listing
Modified Mon Oct 22 09:10:03 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
typo

Revision 1201 - Directory Listing
Modified Sun Oct 21 18:54:55 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
stopifnot()

Revision 1200 - Directory Listing
Modified Sun Oct 21 18:33:33 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1199 - Directory Listing
Modified Sun Oct 21 17:36:43 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
closebank()

Revision 1198 - Directory Listing
Modified Sun Oct 21 17:30:18 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
closebank()

Revision 1197 - Directory Listing
Modified Sun Oct 21 17:20:04 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
closebank()

Revision 1196 - Directory Listing
Modified Sun Oct 21 17:09:33 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
stopifnot()

Revision 1195 - Directory Listing
Modified Sun Oct 21 17:00:39 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
stopifnot()

Revision 1194 - Directory Listing
Modified Sun Oct 21 16:40:43 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
gls -> getliststate

Revision 1193 - Directory Listing
Modified Sun Oct 21 16:31:59 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
gls -> getliststate

Revision 1192 - Directory Listing
Modified Sun Oct 21 16:23:05 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
typo kbd -> kdb

Revision 1191 - Directory Listing
Modified Sun Oct 21 16:06:55 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
typo geType

Revision 1190 - Directory Listing
Modified Sun Oct 21 15:54:38 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
normalizePath

Revision 1189 - Directory Listing
Modified Sun Oct 21 15:40:16 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
do not print results from ghelp

Revision 1188 - Directory Listing
Modified Sun Oct 21 15:39:36 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
option to cat results

Revision 1187 - Directory Listing
Modified Sun Oct 21 15:24:46 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
need explicit socket for ghelp() call

Revision 1186 - Directory Listing
Modified Sun Oct 21 10:05:22 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
polish

Revision 1185 - Directory Listing
Modified Sun Oct 21 10:02:00 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Code factorization using function autosocket()

Revision 1184 - Directory Listing
Modified Sun Oct 21 09:08:59 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
typo

Revision 1183 - Directory Listing
Modified Sat Oct 20 22:50:45 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
now uses ghelp() and kdb()

Revision 1182 - Directory Listing
Modified Sat Oct 20 22:20:13 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
choosebank() has now its own file

Revision 1181 - Directory Listing
Modified Sat Oct 20 22:11:27 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1180 - Directory Listing
Modified Sat Oct 20 21:19:41 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
autosocket()

Revision 1179 - Directory Listing
Modified Sat Oct 20 21:17:55 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
utility

Revision 1178 - Directory Listing
Modified Sat Oct 20 17:51:21 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
typo

Revision 1177 - Directory Listing
Modified Sat Oct 20 17:17:25 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
countsubseqs()

Revision 1176 - Directory Listing
Modified Sat Oct 20 17:16:48 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1175 - Directory Listing
Modified Sat Oct 20 16:47:08 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
update

Revision 1174 - Directory Listing
Modified Sat Oct 20 16:39:12 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
savelist()

Revision 1173 - Directory Listing
Modified Sat Oct 20 16:38:42 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1172 - Directory Listing
Modified Sat Oct 20 15:25:06 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ghelp()

Revision 1171 - Directory Listing
Modified Sat Oct 20 15:24:43 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1170 - Directory Listing
Modified Sat Oct 20 14:18:38 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
modifylist()

Revision 1169 - Directory Listing
Modified Sat Oct 20 14:18:12 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1168 - Directory Listing
Modified Sat Oct 20 13:51:05 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
getliststate()

Revision 1167 - Directory Listing
Modified Sat Oct 20 13:50:27 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1166 - Directory Listing
Modified Sat Oct 20 12:36:06 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no more result returned

Revision 1165 - Directory Listing
Modified Sat Oct 20 12:33:36 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
value section updated

Revision 1164 - Directory Listing
Modified Sat Oct 20 10:21:15 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
setlistname()

Revision 1163 - Directory Listing
Modified Sat Oct 20 10:20:41 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1162 - Directory Listing
Modified Sat Oct 20 09:42:31 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
residuecount()

Revision 1161 - Directory Listing
Modified Sat Oct 20 09:41:52 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1160 - Directory Listing
Modified Sat Oct 20 09:01:59 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
isenum()

Revision 1159 - Directory Listing
Modified Sat Oct 20 09:01:18 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1158 - Directory Listing
Modified Fri Oct 19 16:19:15 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no more binaries in system requirement section

Revision 1157 - Directory Listing
Modified Fri Oct 19 15:54:38 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
oops typo

Revision 1156 - Directory Listing
Modified Fri Oct 19 15:49:40 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no more binaries

Revision 1155 - Directory Listing
Modified Thu Oct 18 13:56:17 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
prettyseq

Revision 1154 - Directory Listing
Modified Thu Oct 18 13:55:50 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1153 - Directory Listing
Modified Thu Oct 18 13:51:24 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
keyword changed

Revision 1152 - Directory Listing
Modified Thu Oct 18 12:57:43 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
gfrag()

Revision 1151 - Directory Listing
Modified Thu Oct 18 12:56:57 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1150 - Directory Listing
Modified Thu Oct 18 11:22:33 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
typo

Revision 1149 - Directory Listing
Modified Thu Oct 18 11:21:50 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
URLs update to new seqinr site

Revision 1148 - Directory Listing
Modified Thu Oct 18 08:35:01 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no more subsequence special case

Revision 1147 - Directory Listing
Modified Thu Oct 18 08:10:58 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
use generic in example

Revision 1146 - Directory Listing
Modified Thu Oct 18 08:03:11 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
socket = auto

Revision 1145 - Directory Listing
Modified Wed Oct 17 18:46:05 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1144 - Directory Listing
Modified Wed Oct 17 18:10:03 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1143 - Directory Listing
Modified Wed Oct 17 14:17:29 2007 UTC (10 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
Pour le lancement du serveur de socket, je mets intern = FALSE
petit mdif des Schunk qui faisait bugger latex

Revision 1142 - Directory Listing
Modified Wed Oct 17 07:37:28 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
sweave pour repro

Revision 1141 - Directory Listing
Modified Tue Oct 16 14:17:55 2007 UTC (10 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1140 - Directory Listing
Modified Tue Oct 16 14:08:04 2007 UTC (10 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1139 - Directory Listing
Modified Tue Oct 16 13:06:05 2007 UTC (10 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1138 - Directory Listing
Modified Tue Oct 16 12:53:06 2007 UTC (10 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1137 - Directory Listing
Modified Tue Oct 16 09:08:59 2007 UTC (10 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1136 - Directory Listing
Modified Tue Oct 16 08:38:01 2007 UTC (10 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1135 - Directory Listing
Modified Mon Oct 15 17:35:30 2007 UTC (10 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1134 - Directory Listing
Modified Mon Oct 15 16:21:22 2007 UTC (10 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1133 - Directory Listing
Modified Tue Oct 9 17:32:03 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
formatC in getSequenceSocket

Revision 1132 - Directory Listing
Modified Tue Oct 9 17:17:13 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
as.numeric() in as.SeqAcnucWeb()

Revision 1131 - Directory Listing
Modified Tue Oct 9 13:35:20 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1130 - Directory Listing
Modified Mon Oct 8 19:13:00 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
R 2.6.0

Revision 1129 - Directory Listing
Modified Mon Oct 8 15:44:59 2007 UTC (10 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1128 - Directory Listing
Modified Sun Oct 7 15:45:48 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
subsequence count added

Revision 1127 - Directory Listing
Modified Sun Oct 7 10:48:04 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
+ tagbank DEV

Revision 1126 - Directory Listing
Modified Sun Oct 7 10:12:36 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
DEV is now an allowed value tagbank parameter in choosebank()

Revision 1125 - Directory Listing
Modified Sun Oct 7 10:00:54 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
DEV is now an allowed value tagbank parameter in choosebank()

Revision 1124 - Directory Listing
Modified Sat Oct 6 16:25:28 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
example code polish

Revision 1123 - Directory Listing
Modified Sat Oct 6 16:03:29 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
missing emph added

Revision 1122 - Directory Listing
Modified Sat Oct 6 15:48:31 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
+author

Revision 1121 - Directory Listing
Modified Sat Oct 6 13:59:15 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
socket slot deletion

Revision 1120 - Directory Listing
Modified Sat Oct 6 13:31:13 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
modifs for the deletion of the socket slot in objects from class seqAcnucWeb

Revision 1119 - Directory Listing
Modified Sat Oct 6 13:27:34 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
using accession number for repro

Revision 1118 - Directory Listing
Modified Sat Oct 6 12:42:43 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no need for the class slot in as.seqAcnucWeb()

Revision 1117 - Directory Listing
Modified Sat Oct 6 12:25:34 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1116 - Directory Listing
Modified Sat Oct 6 12:22:43 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no need for the class slot in as.seqAcnucWeb()

Revision 1115 - Directory Listing
Modified Sat Oct 6 12:17:12 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new method print for objects from class seqAcnucWeb

Revision 1114 - Directory Listing
Modified Sat Oct 6 10:34:37 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
substring() -> substr()

Revision 1113 - Directory Listing
Modified Sat Oct 6 09:03:29 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1112 - Directory Listing
Modified Sat Oct 6 08:57:34 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
function simon() no more usefull

Revision 1111 - Directory Listing
Modified Sat Oct 6 08:56:47 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
parser.socket() is four times faster now

Revision 1110 - Directory Listing
Modified Sat Oct 6 06:10:37 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
query() has now its own file

Revision 1109 - Directory Listing
Modified Mon Oct 1 19:32:54 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
avoiding warnings in GC()

Revision 1108 - Directory Listing
Modified Mon Oct 1 19:29:13 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
... was not forwarded by  GC3()

Revision 1107 - Directory Listing
Modified Mon Oct 1 19:24:23 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
NA propagation in GC()

Revision 1106 - Directory Listing
Modified Mon Oct 1 19:23:36 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
NA propagation

Revision 1105 - Directory Listing
Modified Mon Oct 1 19:13:16 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
sanity check and better description of returned value

Revision 1104 - Directory Listing
Modified Mon Oct 1 19:12:16 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
better argument checking in s2c()

Revision 1103 - Directory Listing
Modified Mon Oct 1 18:22:46 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more server answer analysis in getSequenceSocket

Revision 1102 - Directory Listing
Modified Fri Sep 28 08:54:45 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
passage 1.2.3 et URLs newseqinr sera a VERIFIER

Revision 1101 - Directory Listing
Modified Wed Sep 26 17:25:15 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
modif date

Revision 1100 - Directory Listing
Modified Wed Sep 26 17:24:47 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new release notes added

Revision 1099 - Directory Listing
Modified Wed Sep 26 17:16:04 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1.2

Revision 1098 - Directory Listing
Modified Wed Sep 26 17:13:27 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1097 - Directory Listing
Modified Wed Sep 26 17:06:25 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
acnuc_sockets.rnw

Revision 1096 - Directory Listing
Modified Wed Sep 26 09:01:11 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
T -> TRUE

Revision 1095 - Directory Listing
Modified Mon Sep 24 11:38:17 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
explicit cast (char *) added

Revision 1094 - Directory Listing
Modified Mon Sep 24 11:08:18 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
removeTrailingSpaces is now deleted

Revision 1093 - Directory Listing
Modified Mon Sep 24 11:07:51 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
removeTrailingSpaces -> trimSpace

Revision 1092 - Directory Listing
Modified Mon Sep 24 11:06:41 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
trimSpace

Revision 1091 - Directory Listing
Modified Mon Sep 24 11:06:10 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new utility

Revision 1090 - Directory Listing
Modified Sun Sep 23 15:40:21 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
utility function simon() moved to query() where it is used

Revision 1089 - Directory Listing
Modified Sun Sep 23 15:34:14 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
utility function simon() moved to query() where it is used

Revision 1088 - Directory Listing
Modified Sun Sep 23 15:22:07 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
variable nbkw was not used in getKeywordsocket

Revision 1087 - Directory Listing
Modified Sun Sep 23 13:54:44 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
do not confuse with gc()

Revision 1086 - Directory Listing
Modified Sun Sep 23 13:43:56 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
examples changed

Revision 1085 - Directory Listing
Modified Sun Sep 23 13:21:07 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
splitseq()

Revision 1084 - Directory Listing
Modified Sun Sep 23 13:17:46 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
sanity check added

Revision 1083 - Directory Listing
Modified Sun Sep 23 13:17:20 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no more substring() used

Revision 1082 - Directory Listing
Modified Sun Sep 23 12:36:57 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
sanity check in syncodons()

Revision 1081 - Directory Listing
Modified Sun Sep 23 12:32:31 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Sanity check in example added

Revision 1080 - Directory Listing
Modified Sun Sep 23 12:31:54 2007 UTC (10 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codetools fix and code polish

Revision 1079 - Directory Listing
Modified Thu Sep 20 08:25:44 2007 UTC (10 years, 2 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1078 - Directory Listing
Modified Wed Sep 19 12:46:39 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
accession number in example

Revision 1077 - Directory Listing
Modified Wed Sep 19 12:46:14 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codetool fix

Revision 1076 - Directory Listing
Modified Tue Sep 18 12:08:08 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
variable onlyparents wasn't used

Revision 1075 - Directory Listing
Modified Tue Sep 18 11:24:55 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
mainmatter now included directly in good order

Revision 1074 - Directory Listing
Modified Tue Sep 18 11:14:05 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1073 - Directory Listing
Modified Tue Sep 18 11:06:01 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
bug fix

Revision 1072 - Directory Listing
Modified Wed Sep 12 13:52:12 2007 UTC (10 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Ajout du chapitre sur le servuer de sockets

Revision 1071 - Directory Listing
Modified Mon Sep 3 09:26:57 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1070 - Directory Listing
Modified Mon Sep 3 09:21:45 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
template folder

Revision 1069 - Directory Listing
Modified Mon Sep 3 09:17:30 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
compilation times added

Revision 1068 - Directory Listing
Modified Mon Sep 3 09:17:03 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
compilation time added

Revision 1067 - Directory Listing
Modified Mon Sep 3 09:05:38 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
missing % END line added

Revision 1066 - Directory Listing
Modified Mon Sep 3 08:56:20 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
template added

Revision 1065 - Directory Listing
Modified Sat Sep 1 17:28:49 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
extras in commonrnw added

Revision 1064 - Directory Listing
Modified Sat Sep 1 16:33:01 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
initial addition of template documentation files

Revision 1063 - Directory Listing
Modified Sat Sep 1 16:31:56 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
example of a LaTeX table file

Revision 1062 - Directory Listing
Modified Sat Sep 1 16:12:58 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1061 - Directory Listing
Modified Mon Aug 27 07:49:09 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1060 - Directory Listing
Modified Sat Aug 25 16:46:23 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ref about experimental replication origin in bacteria

Revision 1059 - Directory Listing
Modified Sat Aug 25 15:43:46 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ref about experimental replication origin in bacteria

Revision 1058 - Directory Listing
Modified Fri Aug 24 09:30:05 2007 UTC (10 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
typo to print duplicated removed

Revision 1057 - Directory Listing
Modified Tue Aug 21 11:53:46 2007 UTC (10 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Sys.putenv() -> Sys.setenv()

Revision 1056 - Directory Listing
Modified Tue Jul 24 11:28:35 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Bug found by Michael Kube now fixed

Revision 1055 - Directory Listing
Modified Mon Jul 23 13:12:55 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codetools warnings fixed

Revision 1054 - Directory Listing
Modified Mon Jul 23 13:04:21 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codetolls warning fixed

Revision 1053 - Directory Listing
Modified Mon Jul 23 13:02:27 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codetolls warning fixed

Revision 1052 - Directory Listing
Modified Mon Jul 23 13:00:29 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codetolls warning fixed

Revision 1051 - Directory Listing
Modified Mon Jul 23 11:08:10 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codetools warnings fixed

Revision 1050 - Directory Listing
Modified Mon Jul 23 10:38:36 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codetools warnings fixed

Revision 1049 - Directory Listing
Modified Mon Jul 23 09:50:43 2007 UTC (10 years, 4 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Rajout option exact dans calcul du zscore (base)

Revision 1048 - Directory Listing
Modified Mon Jul 23 09:30:09 2007 UTC (10 years, 4 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Ajout de la nouvelle option du zscore (exact).

Revision 1047 - Directory Listing
Modified Mon Jul 23 09:16:06 2007 UTC (10 years, 4 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Ajout de la reference a la these de Sophie Schbath

Revision 1046 - Directory Listing
Modified Mon Jul 23 09:15:23 2007 UTC (10 years, 4 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Mise a jour pour petites modifications mineures post-these.

Revision 1045 - Directory Listing
Modified Sat Jul 21 16:31:42 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-2

Revision 1044 - Directory Listing
Modified Sat Jul 21 16:28:11 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
global variable bankname was no more in use, its deletion is now ...  deleted

Revision 1043 - Directory Listing
Modified Fri Jul 20 13:22:51 2007 UTC (10 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
F -> FALSE, summary-> method

Revision 1042 - Directory Listing
Modified Fri Jul 20 10:41:11 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
20-JUL-2007

Revision 1041 - Directory Listing
Modified Fri Jul 20 10:40:14 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
111

Revision 1040 - Directory Listing
Modified Fri Jul 20 09:48:11 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
plot.SeqAcnucWeb has now its own file

Revision 1039 - Directory Listing
Modified Fri Jul 20 09:33:57 2007 UTC (10 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modif pour tenir compte des conseils de K Hornick.
On remplace summary.SeqFastaAA par {summary}{SeqFastaAA}

Revision 1038 - Directory Listing
Modified Fri Jul 20 07:54:28 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
T -> TRUE & F -> FALSE

Revision 1037 - Directory Listing
Modified Fri Jul 20 07:51:49 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
T -> TRUE

Revision 1036 - Directory Listing
Modified Fri Jul 20 07:47:41 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
F -> FALSE

Revision 1035 - Directory Listing
Modified Sun Jul 15 17:59:44 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
starification of sections and subsections

Revision 1034 - Directory Listing
Modified Sun Jul 15 17:48:02 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
sanity check example added

Revision 1033 - Directory Listing
Modified Sun Jul 15 17:45:26 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1032 - Directory Listing
Modified Sun Jul 15 17:40:58 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
bug in dist.alignment()

Revision 1031 - Directory Listing
Modified Sat Jul 14 14:57:08 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
local variable charge in computeCharge now clearly used

Revision 1030 - Directory Listing
Modified Sat Jul 14 14:21:42 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
variable m was not used, deleted now

Revision 1029 - Directory Listing
Modified Sat Jul 14 12:46:57 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
error() -> stop()

Revision 1028 - Directory Listing
Modified Sat Jul 14 12:20:55 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no visible binding problem for variable estimate now fixed

Revision 1027 - Directory Listing
Modified Sat Jul 14 11:41:01 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
partial matching and toupper

Revision 1026 - Directory Listing
Modified Sat Jul 14 10:23:11 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
read.alignment and dist.alignment are now in two different files

Revision 1025 - Directory Listing
Modified Mon Jul 9 15:20:21 2007 UTC (10 years, 4 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
modif mineure pour compatibilite avec MAJ Greview

Revision 1024 - Directory Listing
Modified Mon Jul 9 14:46:18 2007 UTC (10 years, 4 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
zscore -base- avec formule exacte (Schbath)

Revision 1023 - Directory Listing
Modified Sat Jul 7 14:49:15 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-1

Revision 1022 - Directory Listing
Modified Sat Jul 7 14:39:57 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-1

Revision 1021 - Directory Listing
Modified Sat Jul 7 14:34:28 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-1

Revision 1020 - Directory Listing
Modified Sat Jul 7 14:29:11 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-1

Revision 1019 - Directory Listing
Modified Sat Jul 7 13:19:05 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-1

Revision 1018 - Directory Listing
Modified Sat Jul 7 12:41:59 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-1

Revision 1017 - Directory Listing
Modified Sat Jul 7 09:02:49 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-1

Revision 1016 - Directory Listing
Modified Sat Jul 7 08:48:17 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-1

Revision 1015 - Directory Listing
Modified Sat Jul 7 08:37:25 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
2007

Revision 1014 - Directory Listing
Modified Sat Jul 7 08:30:54 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-1

Revision 1013 - Directory Listing
Modified Fri Jul 6 11:23:50 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.1-1

Revision 1012 - Directory Listing
Modified Fri Jul 6 11:22:28 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
full reference

Revision 1011 - Directory Listing
Modified Fri Jul 6 11:21:03 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
full reference

Revision 1010 - Directory Listing
Modified Fri Jul 6 11:11:32 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
complete ref

Revision 1009 - Directory Listing
Modified Tue Jul 3 10:54:53 2007 UTC (10 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1008 - Directory Listing
Modified Fri Jun 15 05:34:33 2007 UTC (10 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
unmatched right brace deleted

Revision 1007 - Directory Listing
Modified Fri Jun 15 05:28:13 2007 UTC (10 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
unmatched right brace deleted

Revision 1006 - Directory Listing
Modified Wed Jun 13 17:41:06 2007 UTC (10 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.0-8

Revision 1005 - Directory Listing
Modified Wed Jun 13 17:38:33 2007 UTC (10 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 1004 - Directory Listing
Modified Wed Jun 13 16:16:32 2007 UTC (10 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.0-8

Revision 1003 - Directory Listing
Modified Wed Jun 13 16:03:00 2007 UTC (10 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.0-8

Revision 1002 - Directory Listing
Modified Wed Jun 13 15:45:31 2007 UTC (10 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
encoding

Revision 1001 - Directory Listing
Modified Wed Jun 13 15:10:26 2007 UTC (10 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
encoding latin1 now declared

Revision 1000 - Directory Listing
Modified Wed Jun 13 15:09:08 2007 UTC (10 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
non ASCII character removed

Revision 999 - Directory Listing
Modified Wed Jun 13 15:00:00 2007 UTC (10 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
encoding latin1 now declared

Revision 998 - Directory Listing
Modified Wed Jun 13 14:55:48 2007 UTC (10 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
non ASCII character removed

Revision 997 - Directory Listing
Modified Wed Jun 13 14:16:54 2007 UTC (10 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
encoding latin1 now declared

Revision 996 - Directory Listing
Modified Tue May 22 09:20:14 2007 UTC (10 years, 6 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Suppression de la derniere modif sur l'entier associe au soacket

Revision 995 - Directory Listing
Modified Tue May 22 09:13:14 2007 UTC (10 years, 6 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modif de l'entier associe au numero de socket pour que ca tourne sur l'OS unix
de pbil

Revision 994 - Directory Listing
Modified Tue Apr 24 12:32:23 2007 UTC (10 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 993 - Directory Listing
Modified Tue Apr 24 10:21:56 2007 UTC (10 years, 6 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
division par zero

Revision 992 - Directory Listing
Modified Sat Apr 21 16:44:20 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
oldGC argument and div/0 check

Revision 991 - Directory Listing
Modified Sat Apr 21 16:44:00 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
utility function

Revision 990 - Directory Listing
Modified Sat Apr 21 15:09:50 2007 UTC (10 years, 7 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
in prep -> 2006

Revision 989 - Directory Listing
Modified Thu Apr 19 16:57:33 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.0-8

Revision 988 - Directory Listing
Modified Thu Apr 19 12:23:37 2007 UTC (10 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 987 - Directory Listing
Modified Thu Apr 19 09:42:31 2007 UTC (10 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 986 - Directory Listing
Modified Thu Apr 19 09:40:19 2007 UTC (10 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Ajout des fichiers .c et .h de zlib

Revision 985 - Directory Listing
Modified Wed Apr 18 14:55:18 2007 UTC (10 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Passe de FALSE a TRUE pour la variable "exact"

Revision 984 - Directory Listing
Modified Wed Apr 18 10:48:38 2007 UTC (10 years, 7 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 983 - Directory Listing
Modified Wed Apr 18 09:29:19 2007 UTC (10 years, 7 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 982 - Directory Listing
Modified Wed Apr 18 05:20:44 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 981 - Directory Listing
Modified Wed Apr 18 05:15:41 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 980 - Directory Listing
Modified Wed Apr 18 05:05:15 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 979 - Directory Listing
Modified Tue Apr 17 12:51:31 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
forceToLower argument added

Revision 978 - Directory Listing
Modified Tue Apr 17 12:49:54 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
s2n() has its own file

Revision 977 - Directory Listing
Modified Tue Apr 17 11:31:57 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
extra space in } { deleted

Revision 976 - Directory Listing
Modified Tue Apr 17 11:27:54 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
alphabet argument added

Revision 975 - Directory Listing
Modified Tue Apr 17 09:08:34 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 974 - Directory Listing
Modified Tue Apr 17 09:07:07 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Gabriel Valiente suggestion

Revision 973 - Directory Listing
Modified Tue Apr 17 08:48:08 2007 UTC (10 years, 7 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
tolower

Revision 972 - Directory Listing
Modified Tue Apr 17 08:41:24 2007 UTC (10 years, 7 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
tolower

Revision 971 - Directory Listing
Modified Sun Apr 15 14:14:35 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 970 - Directory Listing
Modified Sun Apr 15 09:38:12 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Jonh -> John

Revision 969 - Directory Listing
Modified Sun Apr 15 09:33:44 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 968 - Directory Listing
Modified Sun Apr 15 09:29:20 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ambiguous argument in call to function comp()

Revision 967 - Directory Listing
Modified Sun Apr 15 08:49:55 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
function comp moved in its own file

Revision 966 - Directory Listing
Modified Sun Apr 15 08:48:37 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ambiguous bases

Revision 965 - Directory Listing
Modified Sat Apr 14 16:25:26 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
function invers() deleted

Revision 964 - Directory Listing
Modified Sat Apr 14 16:00:19 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
handling ambiguous bases

Revision 963 - Directory Listing
Modified Sat Apr 14 15:46:48 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
handling ambiguous bases

Revision 962 - Directory Listing
Modified Sat Apr 14 15:42:47 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
handling ambiguous bases

Revision 961 - Directory Listing
Modified Sat Apr 14 15:40:16 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
handling ambiguous bases

Revision 960 - Directory Listing
Modified Sat Apr 14 11:10:08 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 959 - Directory Listing
Modified Fri Apr 13 16:58:32 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ref to draw.oriloc in examples

Revision 958 - Directory Listing
Modified Fri Apr 13 16:57:57 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more user options

Revision 957 - Directory Listing
Modified Fri Apr 13 16:57:04 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
F -> FALSE

Revision 956 - Directory Listing
Modified Fri Apr 13 13:32:23 2007 UTC (10 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 955 - Directory Listing
Modified Fri Apr 13 09:35:59 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ACNUC book bp fix

Revision 954 - Directory Listing
Modified Fri Apr 13 09:35:19 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 953 - Directory Listing
Modified Thu Apr 12 21:24:19 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 952 - Directory Listing
Modified Thu Apr 12 21:11:11 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
I have removed the non standard -ansi C flag for compilation

Revision 951 - Directory Listing
Modified Thu Apr 12 21:07:35 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
dont run with emblTP example

Revision 950 - Directory Listing
Modified Thu Apr 12 21:06:58 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
code polishing

Revision 949 - Directory Listing
Modified Thu Apr 12 09:23:41 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
NAstring argument

Revision 948 - Directory Listing
Modified Wed Apr 11 14:21:03 2007 UTC (10 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Stope si la plateforme est windows

Revision 947 - Directory Listing
Modified Wed Apr 11 12:46:50 2007 UTC (10 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 946 - Directory Listing
Modified Wed Apr 11 12:46:27 2007 UTC (10 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modifs pour pour pas executer les sockets sur Windaube:w

Revision 945 - Directory Listing
Modified Tue Apr 10 13:54:57 2007 UTC (10 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Je supprime l'utilisation de getConnection

Revision 944 - Directory Listing
Modified Mon Apr 9 13:28:24 2007 UTC (10 years, 7 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
what's happen -> what happens

Revision 943 - Directory Listing
Modified Thu Apr 5 08:31:40 2007 UTC (10 years, 7 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
linux

Revision 942 - Directory Listing
Modified Thu Mar 29 15:45:27 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
forceToLower

Revision 941 - Directory Listing
Modified Wed Mar 28 20:31:26 2007 UTC (10 years, 7 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 940 - Directory Listing
Modified Wed Mar 28 16:00:27 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
seealso links to rearranged.oriloc added

Revision 939 - Directory Listing
Modified Wed Mar 28 15:27:56 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codonW example added

Revision 938 - Directory Listing
Modified Wed Mar 28 13:57:13 2007 UTC (10 years, 7 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 937 - Directory Listing
Modified Wed Mar 28 10:12:13 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ambiguous base case

Revision 936 - Directory Listing
Modified Wed Mar 28 09:50:57 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codoc mismatch fix

Revision 935 - Directory Listing
Modified Tue Mar 27 16:21:11 2007 UTC (10 years, 7 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
debut de doc

Revision 934 - Directory Listing
Modified Tue Mar 27 16:16:37 2007 UTC (10 years, 7 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 933 - Directory Listing
Modified Tue Mar 27 15:56:39 2007 UTC (10 years, 7 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 932 - Directory Listing
Modified Tue Mar 27 15:20:27 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
R >= 2.4.0

Revision 931 - Directory Listing
Modified Tue Mar 27 13:58:46 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
<zlib.h>

Revision 930 - Directory Listing
Modified Mon Mar 26 16:30:19 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.0.7

Revision 929 - Directory Listing
Modified Mon Mar 26 16:26:57 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 928 - Directory Listing
Modified Mon Mar 26 16:09:00 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
bug fixed in oriloc()

Revision 927 - Directory Listing
Modified Mon Mar 26 16:02:26 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
bug fixed in oriloc()

Revision 926 - Directory Listing
Modified Mon Mar 26 12:39:50 2007 UTC (10 years, 7 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
is.null dans oriloc

Revision 925 - Directory Listing
Modified Sun Mar 25 14:53:47 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
update ref MBE (2006) 23:2214-2219

Revision 924 - Directory Listing
Modified Sun Mar 25 14:33:15 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
+final line end

Revision 923 - Directory Listing
Modified Sun Mar 25 14:24:59 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1:length(n) -> seq_len(n)

Revision 922 - Directory Listing
Modified Sun Mar 25 13:57:54 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1:length(n) -> seq_len(n)

Revision 921 - Directory Listing
Modified Sun Mar 25 13:47:47 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
code polish

Revision 920 - Directory Listing
Modified Sun Mar 25 13:46:57 2007 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
+segmented

Revision 919 - Directory Listing
Modified Wed Mar 14 11:20:31 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
lower case explainded

Revision 918 - Directory Listing
Modified Sun Mar 11 16:32:58 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
authorship

Revision 917 - Directory Listing
Modified Sun Mar 11 14:11:32 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 916 - Directory Listing
Modified Sun Mar 11 14:11:06 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
gbk2g2.euk

Revision 915 - Directory Listing
Modified Sun Mar 11 14:07:12 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
undef type for get.ncbi

Revision 914 - Directory Listing
Modified Sun Mar 11 14:03:55 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
doc gbk2g2.euk

Revision 913 - Directory Listing
Modified Sun Mar 11 14:03:28 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
gbk2g2 eukaryotic version

Revision 912 - Directory Listing
Modified Sun Mar 11 13:50:51 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
apis sequence

Revision 911 - Directory Listing
Modified Sun Mar 11 13:38:14 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
release notes

Revision 910 - Directory Listing
Modified Sat Mar 10 17:12:40 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
deletion of an extra \n in the example section

Revision 909 - Directory Listing
Modified Sat Mar 10 15:49:03 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 908 - Directory Listing
Modified Sat Mar 10 15:36:30 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 907 - Directory Listing
Modified Sat Mar 10 14:52:06 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 906 - Directory Listing
Modified Sat Mar 10 14:52:05 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 905 - Directory Listing
Modified Sat Mar 10 14:47:25 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 904 - Directory Listing
Modified Sat Mar 10 14:44:55 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 903 - Directory Listing
Modified Sat Mar 10 14:42:56 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 902 - Directory Listing
Modified Sat Mar 10 14:18:36 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 901 - Directory Listing
Modified Sat Mar 10 14:05:25 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 900 - Directory Listing
Modified Sat Mar 10 13:39:30 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 899 - Directory Listing
Modified Sat Mar 10 11:02:37 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
timing

Revision 898 - Directory Listing
Modified Fri Mar 9 13:26:40 2007 UTC (10 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Suppression des commentaires pendant l'executions

Revision 897 - Directory Listing
Modified Thu Mar 8 16:49:51 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 896 - Directory Listing
Modified Thu Mar 8 16:49:25 2007 UTC (10 years, 8 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
rearranged

Revision 895 - Directory Listing
Modified Thu Mar 8 12:28:09 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
remove empty lines from lastres

Revision 894 - Directory Listing
Modified Mon Mar 5 17:17:57 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 893 - Directory Listing
Modified Mon Mar 5 17:17:24 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
zlib

Revision 892 - Directory Listing
Modified Mon Mar 5 15:03:02 2007 UTC (10 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 891 - Directory Listing
Modified Mon Mar 5 13:43:43 2007 UTC (10 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 890 - Directory Listing
Modified Sun Mar 4 16:09:06 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 889 - Directory Listing
Modified Sun Mar 4 15:57:26 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
R 2.4.1

Revision 888 - Directory Listing
Modified Sun Mar 4 15:48:07 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
R 2.4.1

Revision 887 - Directory Listing
Modified Sun Mar 4 15:42:42 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 886 - Directory Listing
Modified Sun Mar 4 15:33:08 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 885 - Directory Listing
Modified Sun Mar 4 15:24:23 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
R 2.4.1

Revision 884 - Directory Listing
Modified Sun Mar 4 14:42:20 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
update

Revision 883 - Directory Listing
Modified Sun Mar 4 14:40:08 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
R 2.4.1

Revision 882 - Directory Listing
Modified Sun Mar 4 14:28:07 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 881 - Directory Listing
Modified Sun Mar 4 14:14:49 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
R2.4.1

Revision 880 - Directory Listing
Modified Sun Mar 4 14:11:48 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
atxy

Revision 879 - Directory Listing
Modified Sun Mar 4 13:21:13 2007 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
extractseqs essai

Revision 878 - Directory Listing
Modified Fri Mar 2 18:14:51 2007 UTC (10 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 877 - Directory Listing
Modified Thu Mar 1 16:03:12 2007 UTC (10 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
p

ajoutr un read avant la boucle pour zpper le code=

Revision 876 - Directory Listing
Modified Thu Mar 1 15:41:30 2007 UTC (10 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 875 - Directory Listing
Modified Thu Mar 1 15:33:17 2007 UTC (10 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 874 - Directory Listing
Modified Thu Mar 1 14:36:47 2007 UTC (10 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
modif pour windows

Revision 873 - Directory Listing
Modified Thu Mar 1 12:17:00 2007 UTC (10 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 872 - Directory Listing
Modified Thu Mar 1 10:07:19 2007 UTC (10 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modif des sources C socket

Revision 871 - Directory Listing
Modified Wed Feb 21 17:15:36 2007 UTC (10 years, 9 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 870 - Directory Listing
Modified Wed Feb 21 16:41:20 2007 UTC (10 years, 9 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Je modifi le nom de la fonction z_getc en z_getc_R . En effet z_getc existe dejas ailleurs sur le PC de stepg( (dans
/usr/lib/)
wq

Revision 869 - Directory Listing
Modified Wed Feb 21 13:47:08 2007 UTC (10 years, 9 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 868 - Directory Listing
Modified Mon Feb 12 09:16:48 2007 UTC (10 years, 9 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 867 - Directory Listing
Modified Wed Feb 7 15:36:42 2007 UTC (10 years, 9 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
modif barre d'attente

Revision 866 - Directory Listing
Modified Tue Jan 30 13:47:54 2007 UTC (10 years, 9 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 865 - Directory Listing
Modified Fri Jan 26 14:38:06 2007 UTC (10 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 864 - Directory Listing
Modified Fri Jan 26 14:37:00 2007 UTC (10 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 863 - Directory Listing
Modified Tue Jan 16 14:09:11 2007 UTC (10 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no more indented comments and deletion of duplicated # include

Revision 862 - Directory Listing
Modified Tue Jan 16 13:16:16 2007 UTC (10 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
deletion espaces dans # include

Revision 861 - Directory Listing
Modified Tue Jan 9 11:06:04 2007 UTC (10 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
check is.null in parser.socket

Revision 860 - Directory Listing
Modified Mon Jan 8 18:02:31 2007 UTC (10 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 859 - Directory Listing
Modified Mon Jan 8 17:35:24 2007 UTC (10 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
vectorization

Revision 858 - Directory Listing
Modified Mon Jan 8 10:34:21 2007 UTC (10 years, 10 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 857 - Directory Listing
Modified Mon Jan 8 10:30:16 2007 UTC (10 years, 10 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
ajout d'un patch qui bouvl tanty quie la reponse du socket est vide

Revision 856 - Directory Listing
Modified Fri Jan 5 16:54:30 2007 UTC (10 years, 10 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Mofif pour la vesrion compressee

Revision 855 - Directory Listing
Modified Fri Jan 5 16:53:19 2007 UTC (10 years, 10 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modif pour la vesrion compressee

Revision 854 - Directory Listing
Modified Mon Dec 18 09:51:59 2006 UTC (10 years, 11 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Defaut de  zlib mis a FALSE

Revision 853 - Directory Listing
Modified Fri Nov 24 12:37:56 2006 UTC (10 years, 11 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 852 - Directory Listing
Modified Fri Nov 24 09:51:21 2006 UTC (10 years, 11 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 851 - Directory Listing
Modified Wed Nov 22 16:39:31 2006 UTC (11 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 850 - Directory Listing
Modified Tue Nov 21 09:44:38 2006 UTC (11 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
ajout de nzlines

Revision 849 - Directory Listing
Modified Mon Nov 20 17:39:52 2006 UTC (11 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modif des routines de Manolo pour l'adapter aux fonctions de socket de R

Revision 848 - Directory Listing
Modified Mon Nov 20 16:48:58 2006 UTC (11 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modifs pour copiler avec les fonctions C   bas niveau  de R destinees aux sockets

Revision 847 - Directory Listing
Modified Mon Nov 20 16:43:12 2006 UTC (11 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 846 - Directory Listing
Modified Mon Nov 20 16:37:53 2006 UTC (11 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
Utilsiation de la source C pour les donnes compressees.

Revision 845 - Directory Listing
Modified Mon Nov 20 16:26:18 2006 UTC (11 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
Source en C pour recuperer les donnees compressees a tarvers les sockets

Revision 844 - Directory Listing
Modified Sun Nov 19 13:16:46 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
tmp2

Revision 843 - Directory Listing
Modified Sun Nov 19 13:14:02 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
nopss

Revision 842 - Directory Listing
Modified Sun Nov 19 13:13:24 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
tmp

Revision 841 - Directory Listing
Modified Sun Nov 19 13:06:32 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
tmp

Revision 840 - Directory Listing
Modified Sun Nov 19 13:02:21 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 839 - Directory Listing
Modified Sun Nov 19 13:00:24 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 838 - Directory Listing
Modified Fri Nov 17 14:35:57 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
url

Revision 837 - Directory Listing
Modified Fri Nov 17 14:20:40 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
url

Revision 836 - Directory Listing
Modified Fri Nov 17 14:04:18 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 835 - Directory Listing
Modified Fri Nov 17 14:03:56 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
refs bib

Revision 834 - Directory Listing
Modified Fri Nov 17 10:51:57 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
glimmer3

Revision 833 - Directory Listing
Modified Fri Nov 17 10:28:58 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
glimmer 3

Revision 832 - Directory Listing
Modified Mon Oct 30 05:38:28 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
+Suggests and Depends

Revision 831 - Directory Listing
Modified Sun Oct 29 11:44:32 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
as.string default

Revision 830 - Directory Listing
Modified Sun Oct 29 11:28:55 2006 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr
as.string default

Revision 829 - Directory Listing
Modified Wed Oct 25 11:33:34 2006 UTC (11 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 828 - Directory Listing
Modified Wed Oct 25 11:08:06 2006 UTC (11 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
utilistaion d'une fonction c pour la recuperation par socket en mode compression zlib

Revision 827 - Directory Listing
Modified Wed Oct 25 11:07:09 2006 UTC (11 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
ajout des source C pour l'utilisation des sockets en mode compression zlib

Revision 826 - Directory Listing
Modified Thu Oct 19 14:02:21 2006 UTC (11 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
modif examples{}

Revision 825 - Directory Listing
Modified Thu Oct 19 12:23:31 2006 UTC (11 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 824 - Directory Listing
Modified Thu Oct 19 12:01:41 2006 UTC (11 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 823 - Directory Listing
Modified Thu Oct 19 11:59:32 2006 UTC (11 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
Ajour de la fonction extractseqs

Revision 822 - Directory Listing
Modified Tue Oct 17 16:58:11 2006 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
glr

Revision 821 - Directory Listing
Modified Tue Oct 17 10:14:01 2006 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 820 - Directory Listing
Modified Tue Oct 17 09:53:54 2006 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
clfcd

Revision 819 - Directory Listing
Modified Tue Oct 17 09:06:51 2006 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
internationalization

Revision 818 - Directory Listing
Modified Mon Oct 16 12:39:10 2006 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 817 - Directory Listing
Modified Sun Oct 15 16:28:37 2006 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
clfcd()

Revision 816 - Directory Listing
Modified Sat Oct 14 16:17:24 2006 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 815 - Directory Listing
Modified Sat Oct 14 14:11:34 2006 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 814 - Directory Listing
Modified Sat Oct 14 10:17:09 2006 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr
xxxxx in SMJ

Revision 813 - Directory Listing
Modified Sun Sep 10 12:52:59 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
db info

Revision 812 - Directory Listing
Modified Sun Sep 10 12:26:19 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
[ and ]

Revision 811 - Directory Listing
Modified Sun Sep 10 12:13:42 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
is.na

Revision 810 - Directory Listing
Modified Sun Sep 10 10:40:27 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
hide fromchar and tochar

Revision 809 - Directory Listing
Modified Sun Sep 10 10:14:09 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
stresc

Revision 808 - Directory Listing
Modified Sun Sep 10 10:11:29 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
doc for sname.add

Revision 807 - Directory Listing
Modified Sun Sep 10 09:48:02 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
getType in its own file

Revision 806 - Directory Listing
Modified Sun Sep 10 09:28:22 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
sname option

Revision 805 - Directory Listing
Modified Fri Sep 8 20:38:03 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
readsmj()

Revision 804 - Directory Listing
Modified Fri Sep 8 20:24:03 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
readsmj as a single file is better

Revision 803 - Directory Listing
Modified Fri Sep 8 20:18:20 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
readsmj as a single file is better

Revision 802 - Directory Listing
Modified Fri Sep 8 10:16:53 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new function readfirstrec()

Revision 801 - Directory Listing
Modified Fri Sep 8 09:02:08 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
getType(socket = auto)

Revision 800 - Directory Listing
Modified Fri Sep 8 08:02:23 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
File -> file in read.alignment()

Revision 799 - Directory Listing
Modified Fri Sep 8 07:16:00 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
cat is nice

Revision 798 - Directory Listing
Modified Wed Sep 6 18:35:22 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.0-7

Revision 797 - Directory Listing
Modified Wed Sep 6 12:19:37 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 796 - Directory Listing
Modified Mon Sep 4 12:18:16 2006 UTC (11 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
ptit problem dans le latex....

Revision 795 - Directory Listing
Modified Fri Sep 1 22:10:20 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.0-6

Revision 794 - Directory Listing
Modified Fri Sep 1 22:02:04 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.0-6

Revision 793 - Directory Listing
Modified Fri Sep 1 21:51:10 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.0-6

Revision 792 - Directory Listing
Modified Fri Sep 1 20:45:45 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.0-6

Revision 791 - Directory Listing
Modified Fri Sep 1 19:46:29 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
modif SET_ELEMENT -> SET_STRING_ELT demandee par Kurt Hornik

Revision 790 - Directory Listing
Modified Fri Sep 1 14:27:32 2006 UTC (11 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 789 - Directory Listing
Modified Fri Sep 1 14:19:46 2006 UTC (11 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Je remplace
SET_ELEMENT(chaine,i,mkChar(mot));
 par
SET_STRING_ELT(chaine,i,mkChar(mot));

d'apres le mail de Kurt

Simon,

When I run R CMD check on this using a current development version of R
with strict type checking turned on (see R-exts for more info on this),
I get


>   ss <- read.fasta(File = system.file("sequences/seqAA.fasta", package = "seqi

nr"), seqtype = "AA")
Error in s2c(sequences[[i]]) : SET_VECTOR_ELT() can only be applied to a 'list',
 not a 'character'

This can be fixed by changing

    SET_ELEMENT(chaine,i,mkChar(mot));

in util.c to

    SET_STRING_ELT(chaine,i,mkChar(mot));

Can you pls do this, and upload a new version?

Best
-k

Revision 788 - Directory Listing
Modified Wed Aug 30 17:43:44 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
gridrest() deleted

Revision 787 - Directory Listing
Modified Wed Aug 30 17:36:39 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
and in authors

Revision 786 - Directory Listing
Modified Wed Aug 30 17:25:51 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
and in authors

Revision 785 - Directory Listing
Modified Wed Aug 30 17:16:53 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
starification of sections

Revision 784 - Directory Listing
Modified Wed Aug 30 17:01:25 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 783 - Directory Listing
Modified Wed Aug 30 16:59:00 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
cover

Revision 782 - Directory Listing
Modified Wed Aug 30 16:27:47 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
tiny lines

Revision 781 - Directory Listing
Modified Wed Aug 30 16:02:02 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
tiny lines

Revision 780 - Directory Listing
Modified Wed Aug 30 14:15:02 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
compressed

Revision 779 - Directory Listing
Modified Wed Aug 30 14:03:36 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
cover

Revision 778 - Directory Listing
Modified Wed Aug 30 13:54:35 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
cover

Revision 777 - Directory Listing
Modified Tue Aug 29 08:14:05 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
cover stuff

Revision 776 - Directory Listing
Modified Mon Aug 28 22:32:47 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
remove extra whites

Revision 775 - Directory Listing
Modified Sun Aug 27 09:33:19 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 774 - Directory Listing
Modified Sun Aug 27 09:32:57 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
biblio data

Revision 773 - Directory Listing
Modified Sat Aug 26 17:21:14 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
addendum deleted+tag

Revision 772 - Directory Listing
Modified Sat Aug 26 16:47:52 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Conny style for chapters

Revision 771 - Directory Listing
Modified Sat Aug 26 16:20:05 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
UV protection

Revision 770 - Directory Listing
Modified Sat Aug 26 16:18:03 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
hyperref

Revision 769 - Directory Listing
Modified Sat Aug 26 11:44:54 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 768 - Directory Listing
Modified Sat Aug 26 11:41:13 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more tablecode() options

Revision 767 - Directory Listing
Modified Sat Aug 26 11:37:04 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
\n missing

Revision 766 - Directory Listing
Modified Sat Aug 26 11:36:18 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
begin:end check

Revision 765 - Directory Listing
Modified Sat Aug 26 10:54:51 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
genetic codes

Revision 764 - Directory Listing
Modified Sat Aug 26 10:53:41 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more typo options in LaTeX tables

Revision 763 - Directory Listing
Modified Fri Aug 25 20:43:48 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
char ctrl size

Revision 762 - Directory Listing
Modified Fri Aug 25 14:03:31 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ref pour FAQ

Revision 761 - Directory Listing
Modified Fri Aug 25 14:02:58 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more codonW

Revision 760 - Directory Listing
Modified Fri Aug 25 07:42:05 2006 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codonW test files

Revision 759 - Directory Listing
Modified Wed Aug 23 20:51:20 2006 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
typo delated -> deleted + as.character of columns in CODES.NCBI

Revision 758 - Directory Listing
Modified Wed Aug 23 17:43:29 2006 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codonW comparison

Revision 757 - Directory Listing
Modified Wed Aug 23 17:27:27 2006 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
codonW comparison

Revision 756 - Directory Listing
Modified Wed Aug 23 16:32:47 2006 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
sessionInfo section added

Revision 755 - Directory Listing
Modified Wed Aug 23 16:03:52 2006 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
aaindex for 1.0-6

Revision 754 - Directory Listing
Modified Wed Aug 23 15:42:02 2006 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
improved consistancy between a() and aaa()

Revision 753 - Directory Listing
Modified Wed Aug 23 14:36:32 2006 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
the amino-acid index database

Revision 752 - Directory Listing
Modified Thu Jul 27 06:47:28 2006 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
book

Revision 751 - Directory Listing
Modified Thu Jul 27 06:41:02 2006 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
book

Revision 750 - Directory Listing
Modified Wed Jul 26 12:21:48 2006 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 749 - Directory Listing
Modified Wed Jul 26 08:16:43 2006 UTC (11 years, 3 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
added some lines to the human curated part

Revision 748 - Directory Listing
Modified Wed Jul 26 06:57:43 2006 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 747 - Directory Listing
Modified Sun Jul 23 10:07:48 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
dia=F

Revision 746 - Directory Listing
Modified Sun Jul 23 10:04:26 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.0-6

Revision 745 - Directory Listing
Modified Sun Jul 23 09:51:42 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
pink4

Revision 744 - Directory Listing
Modified Fri Jul 21 08:52:11 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 743 - Directory Listing
Modified Tue Jul 18 13:07:50 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
lsequtil commented

Revision 742 - Directory Listing
Modified Tue Jul 18 13:03:43 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 741 - Directory Listing
Modified Tue Jul 18 09:06:19 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 740 - Directory Listing
Modified Tue Jul 18 08:37:45 2006 UTC (11 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 739 - Directory Listing
Modified Tue Jul 18 07:55:51 2006 UTC (11 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 738 - Directory Listing
Modified Fri Jul 14 13:06:50 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
excel addiction ref

Revision 737 - Directory Listing
Modified Sun Jul 9 13:28:47 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
dotPlot

Revision 736 - Directory Listing
Modified Fri Jul 7 15:49:07 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
comments on readAnnots.socket

Revision 735 - Directory Listing
Modified Thu Jul 6 13:55:40 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
nbl =10000

Revision 734 - Directory Listing
Modified Wed Jul 5 14:11:50 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
acnucbook12

Revision 733 - Directory Listing
Modified Mon Jul 3 18:54:09 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Release notes and some color

Revision 732 - Directory Listing
Modified Mon Jul 3 18:53:00 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
section dans corps principal

Revision 731 - Directory Listing
Modified Mon Jul 3 13:48:47 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
crelistfromclientdata

Revision 730 - Directory Listing
Modified Mon Jul 3 13:43:28 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
options F and FK ammended

Revision 729 - Directory Listing
Modified Mon Jul 3 12:14:05 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
example files

Revision 728 - Directory Listing
Modified Sun Jul 2 13:55:50 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 727 - Directory Listing
Modified Sat Jul 1 12:12:48 2006 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 726 - Directory Listing
Modified Thu Jun 22 19:18:20 2006 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
uniprot chunck for FAQ

Revision 725 - Directory Listing
Modified Mon Jun 19 19:08:28 2006 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
pas histogram!

Revision 724 - Directory Listing
Modified Tue May 23 17:34:30 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
history

Revision 723 - Directory Listing
Modified Sun May 21 09:39:01 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
histo deb

Revision 722 - Directory Listing
Modified Fri May 19 07:58:38 2006 UTC (11 years, 6 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
dontrun

Revision 721 - Directory Listing
Modified Thu May 18 16:50:58 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
release note 1.0-5 for reverse.align

Revision 720 - Directory Listing
Modified Thu May 18 16:33:49 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
+Anouk as author

Revision 719 - Directory Listing
Modified Wed May 17 16:05:20 2006 UTC (11 years, 6 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
fichier d'exemple

Revision 718 - Directory Listing
Modified Wed May 17 16:04:33 2006 UTC (11 years, 6 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
reverse.align

Revision 717 - Directory Listing
Modified Tue May 16 08:58:18 2006 UTC (11 years, 6 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Release notes seqinr_1_0-4 modified

Revision 716 - Directory Listing
Modified Tue May 16 08:43:40 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
open mode agrument added

Revision 715 - Directory Listing
Modified Tue May 16 08:43:10 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
read/write consistency check in examples

Revision 714 - Directory Listing
Modified Tue May 16 07:53:37 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no describe in value

Revision 713 - Directory Listing
Modified Mon May 15 16:39:09 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
I have removed two gremlin chars

Revision 712 - Directory Listing
Modified Mon May 15 16:11:57 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Example from Guy Perriere

Revision 711 - Directory Listing
Modified Sun May 14 14:57:38 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
menage des vieilles versions

Revision 710 - Directory Listing
Modified Sun May 14 14:52:01 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
init

Revision 709 - Directory Listing
Modified Sun May 14 14:50:29 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
this work on fasta files is still exhausting

Revision 708 - Directory Listing
Modified Sat May 13 16:48:37 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
this work on fasta files in exhausting

Revision 707 - Directory Listing
Modified Sat May 13 15:07:35 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 706 - Directory Listing
Modified Sat May 13 11:58:01 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 705 - Directory Listing
Modified Sat May 13 11:10:17 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 704 - Directory Listing
Modified Sat May 13 11:07:40 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 703 - Directory Listing
Modified Sat May 13 06:39:40 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
NA.rscu argument

Revision 702 - Directory Listing
Modified Sat May 13 06:32:50 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
NA.rscu argument

Revision 701 - Directory Listing
Modified Fri May 12 19:23:37 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 700 - Directory Listing
Modified Fri May 12 18:58:49 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
read.fasta release notes

Revision 699 - Directory Listing
Modified Fri May 12 18:45:16 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 698 - Directory Listing
Modified Fri May 12 18:42:19 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
link to write.fasta

Revision 697 - Directory Listing
Modified Fri May 12 12:39:26 2006 UTC (11 years, 6 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
write.fasta

Revision 696 - Directory Listing
Modified Fri May 12 12:38:56 2006 UTC (11 years, 6 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
doc write.fasta

Revision 695 - Directory Listing
Modified Fri May 12 09:28:37 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more arguments

Revision 694 - Directory Listing
Modified Sat May 6 06:16:58 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
read.fasta request

Revision 693 - Directory Listing
Modified Tue May 2 14:05:59 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
test heure

Revision 692 - Directory Listing
Modified Tue May 2 07:17:34 2006 UTC (11 years, 6 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr
 nomseq[[i]] au lieu de nomseq

Revision 691 - Directory Listing
Modified Mon May 1 16:38:39 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
examples more explicit

Revision 690 - Directory Listing
Modified Mon May 1 16:21:02 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
1.0-5

Revision 689 - Directory Listing
Modified Mon May 1 15:54:43 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 688 - Directory Listing
Modified Mon May 1 15:53:48 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more examples (fasta, clustal)

Revision 687 - Directory Listing
Modified Mon May 1 15:45:37 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
clustal file example

Revision 686 - Directory Listing
Modified Mon May 1 12:00:50 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
doc polishing

Revision 685 - Directory Listing
Modified Mon May 1 10:38:41 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
transsplicing example

Revision 684 - Directory Listing
Modified Mon May 1 10:18:40 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
modif getTrans.SeqAcnucWeb seq->object

Revision 683 - Directory Listing
Modified Mon May 1 09:18:29 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
add Leo's toy example and some links

Revision 682 - Directory Listing
Modified Mon May 1 09:03:56 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
add Leo's toy example and some links

Revision 681 - Directory Listing
Modified Fri Apr 28 09:21:16 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
typo

Revision 680 - Directory Listing
Modified Fri Apr 28 09:14:34 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
test acgt

Revision 679 - Directory Listing
Modified Fri Apr 28 06:34:20 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 678 - Directory Listing
Modified Thu Apr 27 07:28:15 2006 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
upper case option

Revision 677 - Directory Listing
Modified Mon Apr 3 07:59:15 2006 UTC (11 years, 7 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Modification pour homogeneite avec GetFromSequence.Rd

Revision 676 - Directory Listing
Modified Mon Apr 3 07:55:30 2006 UTC (11 years, 7 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Fusion de tous les getTrucs.Rd associes aux sequences dans GetFromSequence.Rd

Revision 675 - Directory Listing
Modified Fri Mar 31 14:43:23 2006 UTC (11 years, 7 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Nettoyage et simplification du package overview

Revision 674 - Directory Listing
Modified Fri Mar 31 12:23:12 2006 UTC (11 years, 7 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Petit nettoyage du code R

Revision 673 - Directory Listing
Modified Fri Mar 31 11:56:00 2006 UTC (11 years, 7 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Package overview man page

Revision 672 - Directory Listing
Modified Fri Mar 31 11:38:40 2006 UTC (11 years, 7 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Mise en conformite avec les directives de 'Comment ecrire un package R correctement...'

Revision 671 - Directory Listing
Modified Mon Mar 27 12:47:06 2006 UTC (11 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 670 - Directory Listing
Modified Mon Mar 27 12:42:29 2006 UTC (11 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr

Modif des petites coquilles qui font planter avec la version devel R-2.3

Revision 669 - Directory Listing
Modified Mon Mar 27 11:30:50 2006 UTC (11 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
commentaires iso C90

Revision 668 - Directory Listing
Modified Thu Mar 23 10:34:38 2006 UTC (11 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
version 1.0.4

Revision 667 - Directory Listing
Modified Thu Mar 23 10:11:45 2006 UTC (11 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
patch timeout prep_requete

Revision 666 - Directory Listing
Modified Thu Mar 23 08:12:17 2006 UTC (11 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
new 1.05

Revision 665 - Directory Listing
Modified Thu Mar 23 08:11:32 2006 UTC (11 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ajout vignette pdf 1.04

Revision 664 - Directory Listing
Modified Thu Mar 23 08:09:42 2006 UTC (11 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
avec eval = T

Revision 663 - Directory Listing
Modified Wed Mar 22 17:00:27 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Source de l'exemple UV et Prochlorococcus marinus

Revision 662 - Directory Listing
Modified Wed Mar 22 16:08:07 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Don�s UV (Prochlorococcus marinus)

Revision 661 - Directory Listing
Modified Wed Mar 22 16:07:38 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Donn� UV (vue syst�tique)

Revision 660 - Directory Listing
Modified Wed Mar 22 16:05:24 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Donn� UV (Prochlorococcus marinus)

Revision 659 - Directory Listing
Modified Mon Mar 13 16:57:59 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Rajout de d�ils sur les mod�s impl�nt�

Revision 658 - Directory Listing
Modified Mon Mar 13 09:33:38 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 657 - Directory Listing
Modified Fri Mar 10 15:33:59 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Rectification des exemples : identical(all.equal(...), TRUE)

Revision 656 - Directory Listing
Modified Fri Mar 10 13:43:51 2006 UTC (11 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
as.string en plus

Revision 655 - Directory Listing
Modified Thu Mar 9 16:01:32 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 654 - Directory Listing
Modified Thu Mar 9 15:58:45 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Fusion des documentations des fonctions "rho" et "zscore" dans zscore.Rd

Revision 653 - Directory Listing
Modified Thu Mar 9 12:58:53 2006 UTC (11 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
as.string=T

Revision 652 - Directory Listing
Modified Wed Mar 8 15:05:20 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Rajout d'une fonction GC1, modif de la doc correspondante

Revision 651 - Directory Listing
Modified Wed Mar 8 11:04:23 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Calcul des zscores d�v�du rho de Karlin

Revision 650 - Directory Listing
Modified Wed Mar 8 11:03:35 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Calcul du rho de Karlin

Revision 649 - Directory Listing
Modified Wed Mar 8 11:03:00 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Calcul du rho de Karlin, et du zscore qui en d�ve

Revision 648 - Directory Listing
Modified Fri Mar 3 16:37:19 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Mise �our de la documentation pour l'argument 'numcode'

Revision 647 - Directory Listing
Modified Fri Mar 3 16:35:35 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
J'ai �min�a possibilit�auto" de l'option 'numcode'

Revision 646 - Directory Listing
Modified Thu Mar 2 13:57:57 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Rajout de l'option 'freq' pour les fr�ences de mots

Revision 645 - Directory Listing
Modified Thu Mar 2 13:51:23 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Rajout de l'option 'freq' pour les fr�ences de mots

Revision 644 - Directory Listing
Modified Thu Mar 2 12:33:10 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Modification mineure pour meilleure compr�nsion

Revision 643 - Directory Listing
Modified Wed Mar 1 12:08:25 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Fusion de GC.Rd, GC2.Rd et GC3.Rd

Revision 642 - Directory Listing
Modified Wed Mar 1 12:07:52 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Elimin�pour une fusion dans GC.Rd

Revision 641 - Directory Listing
Modified Wed Mar 1 09:22:19 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Nettoyage du code pour �e conforme aux directives du CRAN

Revision 640 - Directory Listing
Modified Wed Mar 1 09:11:47 2006 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Nettoyage du code pour �e conforme aux directives du CRAN

Revision 639 - Directory Listing
Modified Wed Feb 15 17:47:08 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
version eureka

Revision 638 - Directory Listing
Modified Wed Feb 15 15:28:00 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Eureka ?

Revision 637 - Directory Listing
Modified Wed Feb 15 12:20:18 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
deletion de Rinternals puisque inclus par Rdefines

Revision 636 - Directory Listing
Modified Wed Feb 15 12:10:20 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
deletion headers standard inutiles

Revision 635 - Directory Listing
Modified Wed Feb 15 11:09:32 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
no more magic constant 100

Revision 634 - Directory Listing
Modified Wed Feb 15 10:57:49 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
R_alloc dans sous routines

Revision 633 - Directory Listing
Modified Wed Feb 15 09:16:36 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
passage R_alloc

Revision 632 - Directory Listing
Modified Tue Feb 14 16:20:01 2006 UTC (11 years, 9 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modif dans reshesh au niveau du malloc

Revision 631 - Directory Listing
Modified Tue Feb 14 14:12:46 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
caractere NULL copie a la main

Revision 630 - Directory Listing
Modified Tue Feb 14 13:44:10 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more infos in notes

Revision 629 - Directory Listing
Modified Tue Feb 14 13:38:09 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ajout commentaires codes

Revision 628 - Directory Listing
Modified Tue Feb 14 10:06:11 2006 UTC (11 years, 9 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modif notees "S.P." : seq --> seqIn, tailles des chaines de char, etc...

Revision 627 - Directory Listing
Modified Mon Feb 13 21:08:45 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more debug lines

Revision 626 - Directory Listing
Modified Mon Feb 13 19:57:58 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more conformity tests on input

Revision 625 - Directory Listing
Modified Mon Feb 13 19:57:20 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
factorisation du code

Revision 624 - Directory Listing
Modified Mon Feb 13 16:05:59 2006 UTC (11 years, 9 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Ptits commentaires

Revision 623 - Directory Listing
Modified Mon Feb 13 15:06:49 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
factorisation du code de mkresult

Revision 622 - Directory Listing
Modified Mon Feb 13 14:53:49 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ajout warning si moins de deux sequences et retour NA

Revision 621 - Directory Listing
Modified Mon Feb 13 14:31:57 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
tmp est vire

Revision 620 - Directory Listing
Modified Sun Feb 12 10:02:45 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
debug

Revision 619 - Directory Listing
Modified Sat Feb 11 10:09:03 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
mode debug

Revision 618 - Directory Listing
Modified Sat Feb 11 10:07:51 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 617 - Directory Listing
Modified Sat Feb 11 10:05:09 2006 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
passage en double, mode debug, et code_mt a zero

Revision 616 - Directory Listing
Modified Wed Feb 8 10:59:59 2006 UTC (11 years, 9 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Optimisation des fonctions GC, GC2 et GC3

Revision 615 - Directory Listing
Modified Wed Feb 8 10:10:19 2006 UTC (11 years, 9 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Rectification des erreurs de syntaxe de l'exemple

Revision 614 - Directory Listing
Modified Tue Feb 7 17:35:20 2006 UTC (11 years, 9 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Fonction de permutation d'une s�ence selon diff�nts mod�s

Revision 613 - Directory Listing
Modified Tue Feb 7 17:28:26 2006 UTC (11 years, 9 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Fonction de permutation d'une s�ence selon diff�nts mod�s

Revision 612 - Directory Listing
Modified Tue Feb 7 16:46:30 2006 UTC (11 years, 9 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
Modification du vecteur EXP$CG2 : le codon 'tga' �it manqu�

Revision 611 - Directory Listing
Modified Thu Feb 2 21:53:34 2006 UTC (11 years, 9 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
splitting .Rd file into single files per function

Revision 610 - Directory Listing
Modified Tue Jan 31 09:56:25 2006 UTC (11 years, 9 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
fichier .Rd d�ac�

Revision 609 - Directory Listing
Modified Mon Jan 30 11:26:51 2006 UTC (11 years, 9 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 608 - Directory Listing
Modified Mon Jan 9 14:16:59 2006 UTC (11 years, 10 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Ajout du probleme releve par Marcus G Daniels

Revision 607 - Directory Listing
Modified Fri Dec 30 15:07:00 2005 UTC (11 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 606 - Directory Listing
Modified Fri Dec 30 14:48:36 2005 UTC (11 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 605 - Directory Listing
Modified Fri Dec 30 14:29:19 2005 UTC (11 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 604 - Directory Listing
Modified Fri Dec 30 10:46:53 2005 UTC (11 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 603 - Directory Listing
Modified Sat Dec 24 11:12:59 2005 UTC (11 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 602 - Directory Listing
Modified Sat Dec 24 09:34:00 2005 UTC (11 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 601 - Directory Listing
Modified Sat Dec 24 09:04:24 2005 UTC (11 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 600 - Directory Listing
Modified Sat Dec 24 08:52:46 2005 UTC (11 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 599 - Directory Listing
Modified Fri Dec 23 16:53:23 2005 UTC (11 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 598 - Directory Listing
Modified Fri Dec 23 12:09:31 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
passage en data

Revision 597 - Directory Listing
Modified Fri Dec 23 11:27:05 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 596 - Directory Listing
Modified Fri Dec 23 11:20:50 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 595 - Directory Listing
Modified Fri Dec 23 11:19:44 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
polish

Revision 594 - Directory Listing
Modified Thu Dec 22 19:53:36 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 593 - Directory Listing
Modified Thu Dec 22 19:44:30 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
exemple tablecode latex

Revision 592 - Directory Listing
Modified Thu Dec 22 19:43:49 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 591 - Directory Listing
Modified Thu Dec 22 15:23:10 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
within between example

Revision 590 - Directory Listing
Modified Thu Dec 22 13:27:19 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 589 - Directory Listing
Modified Thu Dec 22 13:14:01 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
compile rapide

Revision 588 - Directory Listing
Modified Thu Dec 22 13:13:08 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 587 - Directory Listing
Modified Thu Dec 22 11:53:30 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 586 - Directory Listing
Modified Thu Dec 22 09:59:32 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 585 - Directory Listing
Modified Thu Dec 22 09:29:58 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
TITLE n'est plus necessaire

Revision 584 - Directory Listing
Modified Thu Dec 22 09:22:57 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
version 1.0-4

Revision 583 - Directory Listing
Modified Thu Dec 15 15:13:45 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
release notes

Revision 582 - Directory Listing
Modified Thu Dec 15 14:59:33 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
release notes

Revision 581 - Directory Listing
Modified Thu Dec 15 14:59:16 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
release notes

Revision 580 - Directory Listing
Modified Thu Dec 15 14:58:42 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
option latexfile de tablecode()

Revision 579 - Directory Listing
Modified Thu Dec 15 14:45:59 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
option latexfile de tablecode()

Revision 578 - Directory Listing
Modified Thu Dec 15 14:41:56 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
latexfile

Revision 577 - Directory Listing
Modified Thu Dec 15 13:20:36 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 576 - Directory Listing
Modified Tue Dec 6 13:55:30 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
refs biblio

Revision 575 - Directory Listing
Modified Tue Dec 6 12:48:09 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
splitseq optimise

Revision 574 - Directory Listing
Modified Tue Dec 6 12:47:02 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
un peu plus d'exemples

Revision 573 - Directory Listing
Modified Tue Dec 6 12:45:40 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
reecriture complete, gain facteur 10

Revision 572 - Directory Listing
Modified Tue Dec 6 11:08:57 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
mise a jour partielle

Revision 571 - Directory Listing
Modified Tue Dec 6 10:47:52 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Modifs majeures de la doc de uco

Revision 570 - Directory Listing
Modified Tue Dec 6 10:46:36 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
petites modifs du code de uco

Revision 569 - Directory Listing
Modified Tue Dec 6 09:35:32 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
c'est splitseq qui est lent dans uco

Revision 568 - Directory Listing
Modified Tue Dec 6 08:37:14 2005 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
more wishes...

Revision 567 - Directory Listing
Modified Mon Nov 7 14:25:02 2005 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
Test cvs pour leo.

Revision 566 - Directory Listing
Modified Thu Nov 3 14:02:47 2005 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
Suppression du bug dans gbk2g2 signale par Anouk:

je voulais juste te signaler un (tout) petit bug que je  viens de  d�uvrir dans une fonction de seqinr,  :
c'est dans  la fonction gbk2g2 :

idx5p <- grep(">", input)
   if (length(idx5p != 0))
       warning("5' partial genes encountered (no output):",
           idx5p)
   idx3p <- grep("<", input)
   if (length(idx5p != 0))
       warning("3' partial genes encountered (no output):",
           idx3p)
   idxjoin <- grep("join", input)
   if (length(idx5p != 0))
       warning("join encountered (no output):", idxjoin)

Revision 564 - Directory Listing
Modified Thu Oct 27 09:04:57 2005 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
Suprresion du script compile

Revision 563 - Directory Listing
Modified Thu Oct 27 09:02:00 2005 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr
TODLIST : il faudrit supprimer le script complile

Revision 562 - Directory Listing
Modified Fri Oct 14 16:19:56 2005 UTC (12 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 561 - Directory Listing
Modified Tue Oct 11 16:17:51 2005 UTC (12 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modif de R_socket.R : un nb d'annotations egale a 0 n'est plus autoris�

Revision 560 - Directory Listing
Modified Mon Sep 19 19:48:40 2005 UTC (12 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
dia.bactgensize

Revision 559 - Directory Listing
Modified Wed Sep 14 05:58:01 2005 UTC (12 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
getType auto request

Revision 558 - Directory Listing
Modified Tue Sep 13 12:49:00 2005 UTC (12 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
site web pas a jour

Revision 557 - Directory Listing
Modified Fri Sep 9 14:35:00 2005 UTC (12 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
query(f=nomfic)

Revision 556 - Directory Listing
Modified Mon Sep 5 19:51:58 2005 UTC (12 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
uco

Revision 555 - Directory Listing
Modified Tue Aug 30 07:03:19 2005 UTC (12 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
site web en +

Revision 554 - Directory Listing
Modified Mon Aug 29 11:42:11 2005 UTC (12 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
comppress request

Revision 553 - Directory Listing
Modified Sat Aug 27 01:13:25 2005 UTC (12 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
complement interpretation analyse multivariee

Revision 552 - Directory Listing
Modified Fri Aug 26 16:50:08 2005 UTC (12 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 551 - Directory Listing
Modified Fri Aug 26 10:11:28 2005 UTC (12 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 550 - Directory Listing
Modified Mon Jul 25 13:28:34 2005 UTC (12 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Suppression de ) en trop pour usage choosebank

Revision 549 - Directory Listing
Modified Sat Jul 23 16:10:11 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
detab et polissage

Revision 548 - Directory Listing
Modified Sat Jul 23 09:48:46 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
backup

Revision 547 - Directory Listing
Modified Fri Jul 22 11:58:42 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
backup

Revision 546 - Directory Listing
Modified Fri Jul 22 10:14:43 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
mots clefs

Revision 545 - Directory Listing
Modified Fri Jul 22 09:52:25 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 544 - Directory Listing
Modified Fri Jul 22 09:50:50 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Resilution des bug d'affichage des annotations et de recupretation des mots-clefs

Revision 543 - Directory Listing
Modified Fri Jul 22 09:03:41 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
closebank() ferme les connections

Revision 542 - Directory Listing
Modified Thu Jul 21 23:38:03 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
backup

Revision 541 - Directory Listing
Modified Thu Jul 21 23:16:29 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ajout de closebank()

Revision 540 - Directory Listing
Modified Thu Jul 21 21:20:20 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
choosebank(bonnebanque) retourne un resultat invisible

Revision 539 - Directory Listing
Modified Thu Jul 21 20:50:17 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
MAJEUR: changement de l'ordre des parametres de query()

Revision 538 - Directory Listing
Modified Thu Jul 21 20:35:03 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
le parametre invisible de query est maintenant TRUE par defaut

Revision 537 - Directory Listing
Modified Thu Jul 21 19:11:43 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
option tagbank dans choosebank

Revision 536 - Directory Listing
Modified Thu Jul 21 18:59:06 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
option tagbank dans choosebank

Revision 535 - Directory Listing
Modified Thu Jul 21 13:47:04 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 534 - Directory Listing
Modified Thu Jul 21 13:46:13 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
backup

Revision 533 - Directory Listing
Modified Thu Jul 21 13:18:09 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
verbose de auto de query

Revision 532 - Directory Listing
Modified Thu Jul 21 13:17:50 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 531 - Directory Listing
Modified Thu Jul 21 13:13:15 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
backup

Revision 530 - Directory Listing
Modified Thu Jul 21 13:09:56 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modif pour recupere le socket de la banque courante qund le socket n'est pas
specifie

Revision 529 - Directory Listing
Modified Thu Jul 21 09:55:45 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Ajout de la release, du statut, et des details de la banque dans les elements
associ�a la banque

Revision 528 - Directory Listing
Modified Thu Jul 21 09:09:08 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
argument virtual

Revision 527 - Directory Listing
Modified Wed Jul 20 16:13:19 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 526 - Directory Listing
Modified Wed Jul 20 16:00:11 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 525 - Directory Listing
Modified Wed Jul 20 15:58:55 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 524 - Directory Listing
Modified Wed Jul 20 15:47:46 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
modif afficage info banque a l'ouverture

Revision 523 - Directory Listing
Modified Wed Jul 20 15:05:37 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Ajout de l'affichage du decsriptif de la banque a l'ouverture

Revision 522 - Directory Listing
Modified Wed Jul 20 12:37:41 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
simple sauvegarde

Revision 521 - Directory Listing
Modified Wed Jul 20 11:39:05 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
juste une sauvegarde

Revision 520 - Directory Listing
Modified Wed Jul 20 09:39:16 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 519 - Directory Listing
Modified Wed Jul 20 08:30:18 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 518 - Directory Listing
Modified Tue Jul 19 17:03:45 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
premier ajout

Revision 517 - Directory Listing
Modified Tue Jul 19 17:02:12 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
un patch pas beau pour le pb du timeout dans query

Revision 516 - Directory Listing
Modified Tue Jul 19 14:16:56 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
essai

Revision 515 - Directory Listing
Modified Tue Jul 19 14:12:20 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modif de la doc pour prendre en compre les modfis des classes SeqAcnuccWeb et de query pour recupere le nom, la longueur,
 la frame et le code genetique associes a une sequence.

Revision 514 - Directory Listing
Modified Tue Jul 19 14:11:43 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modif des classes SeqAcbycWeb et de query pour recupere le nom, la longueur,
 la frame et le code genetique associes a une sequence.
Modifs mineures...

Revision 513 - Directory Listing
Modified Tue Jul 19 11:29:15 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ajout de la reference in press pour seqinR

Revision 512 - Directory Listing
Modified Mon Jul 18 22:24:20 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
J'ai vire la boucle de query et gagne un facteur 15 pour une requete d'une liste de 892 elements: de 60 a 4 secondes sur mon ADSL...

Revision 511 - Directory Listing
Modified Mon Jul 18 21:53:54 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Quelques commentaires sur la boucle de query

Revision 510 - Directory Listing
Modified Mon Jul 18 20:40:38 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Ajout du verbose de query

Revision 509 - Directory Listing
Modified Mon Jul 18 20:40:05 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Deplacement de prep_requete de query a choosebank

Revision 508 - Directory Listing
Modified Mon Jul 18 19:30:15 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Que du cosmetique

Revision 507 - Directory Listing
Modified Mon Jul 18 16:28:54 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
Blindage de clientID et deplacement au bon endroit

Revision 506 - Directory Listing
Modified Mon Jul 18 14:29:17 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 505 - Directory Listing
Modified Mon Jul 18 13:44:16 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 504 - Directory Listing
Modified Mon Jul 18 13:41:59 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
ajout vignette pdf

Revision 503 - Directory Listing
Modified Mon Jul 18 13:38:44 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
passage des sources-->src

Revision 502 - Directory Listing
Modified Mon Jul 18 09:33:11 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 501 - Directory Listing
Modified Mon Jul 18 09:28:04 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 500 - Directory Listing
Modified Mon Jul 18 08:56:41 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modifs:
	donne un identifiant (seqinr_version) au client
	plus de probleme de longueur  (formatC(length, format = "d"))
	affiche un warning alieu de s'arreter quand il ya des caracteres non iupac

Revision 499 - Directory Listing
Modified Sun Jul 17 19:57:35 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
inherits au lieu de ==

Revision 498 - Directory Listing
Modified Sun Jul 17 19:56:57 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
modifs mineures

Revision 497 - Directory Listing
Modified Sat Jul 16 15:26:14 2005 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 496 - Directory Listing
Modified Mon Jul 11 11:40:02 2005 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Modification de DESCRIPTION: mainteneur, titre, date....

Revision 495 - Directory Listing
Modified Tue May 17 11:08:46 2005 UTC (12 years, 6 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Changement de numero de version

Revision 494 - Directory Listing
Modified Tue May 10 09:12:58 2005 UTC (12 years, 6 months ago) by penel
Original Path: branches/seqinr_cran/seqinr
Suppresion d'une parenthese surnumeraire pour que ca marche avec R-2.2.0

Revision 493 - Directory Listing
Modified Fri Mar 4 13:14:19 2005 UTC (12 years, 8 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
	I added the line  ZipData:no

Revision 492 - Directory Listing
Modified Fri Mar 4 09:01:37 2005 UTC (12 years, 8 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
DESCRIPTION

Revision 491 - Directory Listing
Modified Wed Mar 2 10:29:38 2005 UTC (12 years, 8 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
DESCRIPTION

Revision 490 - Directory Listing
Modified Wed Mar 2 09:53:49 2005 UTC (12 years, 8 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
R_fasta.R

Revision 489 - Directory Listing
Modified Wed Mar 2 09:41:32 2005 UTC (12 years, 8 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
	to modify the encoding in emacs: ctrl x ret f unix

Revision 488 - Directory Listing
Modified Tue Mar 1 09:29:39 2005 UTC (12 years, 8 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
DESCRIPTION

Revision 487 - Directory Listing
Modified Tue Mar 1 09:26:29 2005 UTC (12 years, 8 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
	I replaced the function scan() by readLines()

Revision 486 - Directory Listing
Modified Tue Feb 15 12:54:36 2005 UTC (12 years, 9 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
	I fixed the bug relating to a bug in R with par(omd).

Revision 485 - Directory Listing
Modified Tue Feb 8 12:47:19 2005 UTC (12 years, 9 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
util.R

Revision 484 - Directory Listing
Modified Sun Jan 9 17:52:22 2005 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 483 - Directory Listing
Modified Thu Jan 6 15:27:27 2005 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 482 - Directory Listing
Modified Thu Dec 16 08:04:53 2004 UTC (12 years, 11 months ago) by charif
Original Path: branches/seqinr_cran/seqinr

I added some test in s2c().

Revision 481 - Directory Listing
Modified Thu Dec 16 08:02:50 2004 UTC (12 years, 11 months ago) by charif
Original Path: branches/seqinr_cran/seqinr

I removed the "rounds" in uco().

Revision 480 - Directory Listing
Modified Wed Nov 3 15:33:07 2004 UTC (13 years ago) by charif
Original Path: branches/seqinr_cran/seqinr
	index file is automatically generated

Revision 479 - Directory Listing
Modified Wed Nov 3 15:31:02 2004 UTC (13 years ago) by charif
Original Path: branches/seqinr_cran/seqinr
compile

Revision 478 - Directory Listing
Modified Wed Nov 3 15:25:03 2004 UTC (13 years ago) by charif
Original Path: branches/seqinr_cran/seqinr
DESCRIPTION

Revision 477 - Directory Listing
Modified Wed Nov 3 14:46:00 2004 UTC (13 years ago) by charif
Original Path: branches/seqinr_cran/seqinr
AAstat.Rd

Revision 476 - Directory Listing
Modified Thu Oct 21 14:49:11 2004 UTC (13 years, 1 month ago) by charif
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 475 - Directory Listing
Modified Tue Oct 19 12:41:13 2004 UTC (13 years, 1 month ago) by charif
Original Path: branches/seqinr_cran/seqinr
oriloc.Rd

Revision 474 - Directory Listing
Modified Tue Oct 12 14:38:58 2004 UTC (13 years, 1 month ago) by charif
Original Path: branches/seqinr_cran/seqinr
test.phylip

Revision 473 - Directory Listing
Modified Tue Oct 12 14:37:25 2004 UTC (13 years, 1 month ago) by charif
Original Path: branches/seqinr_cran/seqinr
alignment.c

Revision 472 - Directory Listing
Modified Fri Oct 1 14:20:23 2004 UTC (13 years, 1 month ago) by charif
Original Path: branches/seqinr_cran/seqinr
alignment.c

Revision 471 - Directory Listing
Modified Fri Oct 1 08:24:39 2004 UTC (13 years, 1 month ago) by charif
Original Path: branches/seqinr_cran/seqinr
SEQINR.UTIL.RData

Revision 470 - Directory Listing
Modified Fri Oct 1 08:23:51 2004 UTC (13 years, 1 month ago) by charif
Original Path: branches/seqinr_cran/seqinr
AAstat.Rd

Revision 469 - Directory Listing
Modified Fri Oct 1 08:23:19 2004 UTC (13 years, 1 month ago) by charif
Original Path: branches/seqinr_cran/seqinr
AAstat.R

Revision 468 - Directory Listing
Modified Fri Oct 1 08:22:44 2004 UTC (13 years, 1 month ago) by charif
Original Path: branches/seqinr_cran/seqinr
alignment.c

Revision 467 - Directory Listing
Modified Fri Sep 24 13:48:04 2004 UTC (13 years, 1 month ago) by charif
Original Path: branches/seqinr_cran/seqinr
choosebank.Rd

Revision 466 - Directory Listing
Modified Thu Sep 23 13:30:44 2004 UTC (13 years, 1 month ago) by charif
Original Path: branches/seqinr_cran/seqinr
alignment.c

Revision 465 - Directory Listing
Modified Thu Sep 23 08:56:13 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
alignment.h

Revision 464 - Directory Listing
Modified Thu Sep 23 08:41:56 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
alignment.c

Revision 463 - Directory Listing
Modified Wed Sep 22 13:45:02 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
EXP.Rd

Revision 462 - Directory Listing
Modified Wed Sep 22 13:44:31 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
EXP.RData

Revision 461 - Directory Listing
Modified Tue Sep 21 14:54:04 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
aaa.Rd

Revision 460 - Directory Listing
Modified Tue Sep 21 13:30:45 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
SEQINR.UTIL.RData

Revision 459 - Directory Listing
Modified Tue Sep 21 09:12:18 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
R_socket.R

Revision 458 - Directory Listing
Modified Tue Sep 21 09:12:00 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
query.Rd

Revision 457 - Directory Listing
Modified Tue Sep 21 08:18:37 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
choosebank.Rd

Revision 456 - Directory Listing
Modified Tue Sep 21 08:18:17 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
	blabla

Revision 455 - Directory Listing
Modified Thu Sep 16 13:08:02 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
getAnnot.Rd

Revision 454 - Directory Listing
Modified Thu Sep 16 12:57:57 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
UBIQUITIN.mase

Revision 453 - Directory Listing
Modified Thu Sep 16 12:57:24 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
kaks.Rd

Revision 452 - Directory Listing
Modified Wed Sep 15 14:14:18 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
AAstat.Rd

Revision 451 - Directory Listing
Modified Wed Sep 15 14:11:01 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
AAstat.R

Revision 450 - Directory Listing
Modified Wed Sep 15 13:50:13 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
ClassSeq.R

Revision 449 - Directory Listing
Modified Wed Sep 15 13:39:14 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
AAstat.R

Revision 448 - Directory Listing
Modified Wed Sep 15 13:26:11 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
AAstat.R

Revision 447 - Directory Listing
Modified Wed Sep 15 13:25:45 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
PI.R

Revision 446 - Directory Listing
Modified Tue Sep 14 11:34:26 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
R_socket.R

Revision 445 - Directory Listing
Modified Tue Sep 14 11:33:56 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
getType.Rd

Revision 444 - Directory Listing
Modified Tue Sep 14 11:33:18 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
query.Rd

Revision 443 - Directory Listing
Modified Mon Sep 13 08:19:26 2004 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 442 - Directory Listing
Modified Mon Sep 13 08:01:24 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
dist.alignment.Rd

Revision 441 - Directory Listing
Modified Fri Sep 10 14:18:02 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
R_socket.R

Revision 440 - Directory Listing
Modified Fri Sep 10 14:10:11 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
R_socket.R

Revision 439 - Directory Listing
Modified Fri Sep 10 13:33:49 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
R_socket.R

Revision 438 - Directory Listing
Modified Fri Sep 10 12:37:27 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
kaks.c

Revision 437 - Directory Listing
Modified Fri Sep 10 12:36:53 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
	kaks

Revision 436 - Directory Listing
Modified Thu Sep 9 09:38:27 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
alignment.c

Revision 435 - Directory Listing
Modified Tue Sep 7 08:55:02 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
choosebank.Rd

Revision 434 - Directory Listing
Modified Tue Sep 7 08:35:35 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
.#acnucfile

Revision 433 - Directory Listing
Modified Tue Sep 7 08:34:32 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
simext.h

Revision 432 - Directory Listing
Modified Tue Sep 7 08:20:18 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
arbrebin.c

Revision 431 - Directory Listing
Modified Sun Sep 5 15:25:45 2004 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
svmult.cvs

Revision 430 - Directory Listing
Modified Sun Sep 5 15:23:08 2004 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
*** empty log message ***

Revision 429 - Directory Listing
Modified Fri Sep 3 14:21:58 2004 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr
I have added a re-try in case of failure of first estimate

Revision 428 - Directory Listing
Modified Fri Sep 3 12:07:40 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
getLocation.Rd

Revision 427 - Directory Listing
Modified Fri Sep 3 12:06:22 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
getSequence.Rd

Revision 426 - Directory Listing
Modified Fri Sep 3 12:04:51 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
plot.SeqAcnucWeb.Rd

Revision 425 - Directory Listing
Modified Fri Sep 3 09:05:08 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
seqinr.R

Revision 424 - Directory Listing
Modified Fri Sep 3 09:04:16 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
TEXT

Revision 423 - Directory Listing
Modified Fri Sep 3 08:56:40 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
R_acnuc.c

Revision 422 - Directory Listing
Modified Fri Sep 3 08:55:34 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
Makevars

Revision 421 - Directory Listing
Modified Fri Sep 3 08:54:29 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
mkbank.R

Revision 420 - Directory Listing
Modified Fri Sep 3 08:53:57 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
R_socket.R

Revision 419 - Directory Listing
Modified Fri Sep 3 08:36:49 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
choosebank.socket.Rd

Revision 418 - Directory Listing
Modified Fri Sep 3 08:36:27 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
choosebank.Rd

Revision 417 - Directory Listing
Modified Fri Sep 3 08:34:46 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
query.socket.Rd

Revision 416 - Directory Listing
Modified Fri Sep 3 08:31:32 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
mkbank.Rd

Revision 415 - Directory Listing
Modified Fri Sep 3 08:31:02 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
version cran

Revision 414 - Directory Listing
Modified Fri Sep 3 08:29:38 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
ClassSeq.R

Revision 413 - Directory Listing
Modified Fri Sep 3 08:08:10 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
version cran

Revision 412 - Directory Listing
Modified Fri Sep 3 08:02:16 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
version cran

Revision 411 - Directory Listing
Modified Fri Sep 3 08:01:21 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
vesion cran

Revision 410 - Directory Listing
Modified Fri Sep 3 07:57:42 2004 UTC (13 years, 2 months ago) by charif
Original Path: branches/seqinr_cran/seqinr
cran version

Revision 409 - Directory Listing
Modified Wed Sep 1 12:24:48 2004 UTC (13 years, 2 months ago) by
Original Path: branches/seqinr_cran/seqinr
This commit was manufactured by cvs2svn to create branch 'seqinr_cran'.

Revision 408 - Directory Listing
Modified Wed Sep 1 12:24:47 2004 UTC (13 years, 2 months ago) by charif
Original Path: trunk/seqinr
get.db.growth.Rd

Revision 407 - Directory Listing
Modified Wed Sep 1 12:24:28 2004 UTC (13 years, 2 months ago) by charif
Original Path: trunk/seqinr
get.ncbi.R

Revision 406 - Directory Listing
Modified Tue Aug 31 14:50:01 2004 UTC (13 years, 2 months ago) by charif
Original Path: trunk/seqinr
uco.R

Revision 405 - Directory Listing
Modified Tue Aug 31 13:58:45 2004 UTC (13 years, 2 months ago) by charif
Original Path: trunk/seqinr
alignment.c

Revision 404 - Directory Listing
Modified Tue Aug 31 13:57:57 2004 UTC (13 years, 2 months ago) by charif
Original Path: trunk/seqinr
a.Rd

Revision 403 - Directory Listing
Modified Tue Aug 31 13:48:55 2004 UTC (13 years, 2 months ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 402 - Directory Listing
Modified Tue Aug 31 07:56:13 2004 UTC (13 years, 2 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 401 - Directory Listing
Modified Mon Aug 30 12:36:31 2004 UTC (13 years, 2 months ago) by charif
Original Path: trunk/seqinr
test.msf

Revision 400 - Directory Listing
Modified Mon Aug 30 07:33:07 2004 UTC (13 years, 2 months ago) by charif
Original Path: trunk/seqinr
moravec.RData

Revision 399 - Directory Listing
Modified Mon Aug 30 07:32:25 2004 UTC (13 years, 2 months ago) by charif
Original Path: trunk/seqinr
	removed

Revision 398 - Directory Listing
Modified Fri Aug 27 08:07:06 2004 UTC (13 years, 2 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 397 - Directory Listing
Modified Fri Aug 27 08:03:46 2004 UTC (13 years, 2 months ago) by charif
Original Path: trunk/seqinr
uco.R

Revision 396 - Directory Listing
Modified Mon Aug 23 11:17:47 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
getLocation.Rd

Revision 395 - Directory Listing
Modified Mon Aug 23 09:23:45 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
	see getTrans.Rd

Revision 394 - Directory Listing
Modified Mon Aug 23 09:22:43 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
getTrans replace Translate

Revision 393 - Directory Listing
Modified Mon Aug 23 08:23:43 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
getKeyword.Rd

Revision 392 - Directory Listing
Modified Mon Aug 23 08:21:35 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
getKeyword.Rd

Revision 391 - Directory Listing
Modified Fri Aug 20 12:35:03 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
	I modified the function getAnnots.socket

Revision 390 - Directory Listing
Modified Thu Aug 19 14:06:50 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
kaks.Rd

Revision 389 - Directory Listing
Modified Thu Aug 19 09:56:15 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
uco.Rd

Revision 388 - Directory Listing
Modified Thu Aug 19 09:50:50 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
	see uco.R

Revision 387 - Directory Listing
Modified Thu Aug 19 09:50:08 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
	I improved the function (in particular for the calcul of the rscu)

Revision 386 - Directory Listing
Modified Thu Aug 5 13:56:41 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 385 - Directory Listing
Modified Thu Aug 5 13:55:55 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
kaks.Rd

Revision 384 - Directory Listing
Modified Thu Aug 5 13:55:27 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
kaks.c

Revision 383 - Directory Listing
Modified Thu Aug 5 13:54:29 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
kaks.R

Revision 382 - Directory Listing
Modified Thu Aug 5 13:53:49 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
R_acnuc.c

Revision 381 - Directory Listing
Modified Thu Aug 5 13:51:59 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
EXP.Rd

Revision 380 - Directory Listing
Modified Thu Aug 5 13:51:27 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 379 - Directory Listing
Modified Tue Aug 3 11:25:23 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
PI.R

Revision 378 - Directory Listing
Modified Tue Aug 3 10:54:11 2004 UTC (13 years, 3 months ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 377 - Directory Listing
Modified Fri Jul 23 12:57:16 2004 UTC (13 years, 4 months ago) by charif
Original Path: trunk/seqinr
	add pk values

Revision 376 - Directory Listing
Modified Fri Jul 23 12:56:25 2004 UTC (13 years, 4 months ago) by charif
Original Path: trunk/seqinr
new function to estimate the pi

Revision 375 - Directory Listing
Modified Fri Jul 23 12:55:18 2004 UTC (13 years, 4 months ago) by charif
Original Path: trunk/seqinr
PI.R

Revision 374 - Directory Listing
Modified Tue May 18 13:30:39 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
alignment.c

Revision 373 - Directory Listing
Modified Tue May 18 13:29:34 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
GC2.Rd

Revision 372 - Directory Listing
Modified Tue May 18 13:29:19 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
lib.R

Revision 371 - Directory Listing
Modified Tue May 18 08:55:53 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
choosebank.socket.Rd

Revision 370 - Directory Listing
Modified Tue May 18 06:44:01 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
GC3.Rd

Revision 369 - Directory Listing
Modified Tue May 18 06:43:41 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
GC2.Rd

Revision 368 - Directory Listing
Modified Tue May 18 06:42:38 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
util.R

Revision 367 - Directory Listing
Modified Tue May 18 06:24:52 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
lib.R

Revision 366 - Directory Listing
Modified Fri May 14 13:26:00 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
uco.R

Revision 365 - Directory Listing
Modified Fri May 14 08:54:11 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
R_socket.R

Revision 364 - Directory Listing
Modified Mon May 3 08:35:31 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
getExon.Rd

Revision 363 - Directory Listing
Modified Mon May 3 08:34:20 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
alignment.c

Revision 362 - Directory Listing
Modified Mon May 3 08:33:50 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
R_socket.R

Revision 361 - Directory Listing
Modified Mon May 3 08:33:36 2004 UTC (13 years, 6 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 360 - Directory Listing
Modified Fri Apr 2 09:16:54 2004 UTC (13 years, 7 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 359 - Directory Listing
Modified Fri Apr 2 07:19:38 2004 UTC (13 years, 7 months ago) by charif
Original Path: trunk/seqinr
read.alignment.Rd

Revision 358 - Directory Listing
Modified Fri Apr 2 07:11:57 2004 UTC (13 years, 7 months ago) by charif
Original Path: trunk/seqinr
dist.mase.Rd

Revision 357 - Directory Listing
Modified Fri Apr 2 07:11:33 2004 UTC (13 years, 7 months ago) by charif
Original Path: trunk/seqinr
read.mase.Rd

Revision 356 - Directory Listing
Modified Fri Apr 2 07:11:13 2004 UTC (13 years, 7 months ago) by charif
Original Path: trunk/seqinr
read.alignment.Rd

Revision 355 - Directory Listing
Modified Fri Apr 2 07:10:54 2004 UTC (13 years, 7 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 354 - Directory Listing
Modified Fri Apr 2 07:09:21 2004 UTC (13 years, 7 months ago) by charif
Original Path: trunk/seqinr
	This function allows to read an alignment

Revision 353 - Directory Listing
Modified Fri Apr 2 07:04:51 2004 UTC (13 years, 7 months ago) by charif
Original Path: trunk/seqinr
	some new .c have been added

Revision 352 - Directory Listing
Modified Fri Apr 2 06:59:22 2004 UTC (13 years, 7 months ago) by charif
Original Path: trunk/seqinr
	see mase.c

Revision 351 - Directory Listing
Modified Fri Apr 2 06:58:53 2004 UTC (13 years, 7 months ago) by charif
Original Path: trunk/seqinr
	the functions of this file have been moved in the file
alignment.c

Revision 350 - Directory Listing
Modified Fri Apr 2 06:57:36 2004 UTC (13 years, 7 months ago) by charif
Original Path: trunk/seqinr
	see alignment.c

Revision 349 - Directory Listing
Modified Fri Apr 2 06:56:51 2004 UTC (13 years, 7 months ago) by charif
Original Path: trunk/seqinr
	This file contains some functions (taking from seaview)
which allow to read alignments in differents formats: mase,
clustal, msf, phylip, fasta.

Revision 348 - Directory Listing
Modified Tue Mar 23 15:35:39 2004 UTC (13 years, 8 months ago) by charif
Original Path: trunk/seqinr
	I modified the function chosebank()

Revision 347 - Directory Listing
Modified Tue Feb 24 14:56:14 2004 UTC (13 years, 8 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 346 - Directory Listing
Modified Tue Feb 24 14:53:17 2004 UTC (13 years, 8 months ago) by charif
Original Path: trunk/seqinr
	new fonction

Revision 345 - Directory Listing
Modified Tue Feb 24 14:53:00 2004 UTC (13 years, 8 months ago) by charif
Original Path: trunk/seqinr
	new function

Revision 344 - Directory Listing
Modified Mon Feb 23 15:32:18 2004 UTC (13 years, 8 months ago) by charif
Original Path: trunk/seqinr
dist.mase.Rd

Revision 343 - Directory Listing
Modified Mon Feb 23 15:28:08 2004 UTC (13 years, 8 months ago) by charif
Original Path: trunk/seqinr
	I modified some options

Revision 342 - Directory Listing
Modified Tue Jan 27 08:42:55 2004 UTC (13 years, 9 months ago) by charif
Original Path: trunk/seqinr
dist.mase.Rd

Revision 341 - Directory Listing
Modified Mon Jan 26 15:51:30 2004 UTC (13 years, 9 months ago) by charif
Original Path: trunk/seqinr
test.mase

Revision 340 - Directory Listing
Modified Mon Jan 26 15:50:44 2004 UTC (13 years, 9 months ago) by charif
Original Path: trunk/seqinr
read.mase.Rd

Revision 339 - Directory Listing
Modified Mon Jan 26 15:49:57 2004 UTC (13 years, 9 months ago) by charif
Original Path: trunk/seqinr
mase.R

Revision 338 - Directory Listing
Modified Tue Jan 20 20:48:03 2004 UTC (13 years, 10 months ago) by lobry
Original Path: trunk/seqinr
I have changed a link to codes (obsolete) to a link to unclass in the
see also section.

Revision 337 - Directory Listing
Modified Tue Jan 20 16:24:17 2004 UTC (13 years, 10 months ago) by charif
Original Path: trunk/seqinr
SeqAcnucWeb

Revision 336 - Directory Listing
Modified Tue Jan 20 16:23:45 2004 UTC (13 years, 10 months ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 335 - Directory Listing
Modified Tue Jan 20 16:23:24 2004 UTC (13 years, 10 months ago) by charif
Original Path: trunk/seqinr
	I added the following functions: getExon and getKeyword

Revision 334 - Directory Listing
Modified Wed Nov 26 21:59:38 2003 UTC (13 years, 11 months ago) by lobry
Original Path: trunk/seqinr
Translate.Rd

Revision 333 - Directory Listing
Modified Wed Nov 26 21:52:39 2003 UTC (13 years, 11 months ago) by lobry
Original Path: trunk/seqinr
translate.Rd

Revision 332 - Directory Listing
Modified Sat Nov 22 11:09:19 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
SeqFastaAA.Rd

Revision 331 - Directory Listing
Modified Sat Nov 22 11:09:02 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 330 - Directory Listing
Modified Sat Nov 22 11:05:33 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
SeqFrag.Rd

Revision 329 - Directory Listing
Modified Fri Nov 21 14:53:48 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 328 - Directory Listing
Modified Fri Nov 21 13:02:29 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
timing.c

Revision 327 - Directory Listing
Modified Fri Nov 21 10:23:38 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
closebank.socket.Rd

Revision 326 - Directory Listing
Modified Fri Nov 21 10:22:09 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
closebank.socket.Rd

Revision 325 - Directory Listing
Modified Fri Nov 21 10:04:55 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
read.fasta.Rd

Revision 324 - Directory Listing
Modified Fri Nov 21 09:59:37 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
lib.R

Revision 323 - Directory Listing
Modified Fri Nov 21 09:59:17 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
uco.Rd

Revision 322 - Directory Listing
Modified Fri Nov 21 08:35:58 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
util.R

Revision 321 - Directory Listing
Modified Fri Nov 21 08:23:07 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	i added the RSCU

Revision 320 - Directory Listing
Modified Fri Nov 21 07:13:15 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	new Rd file

Revision 319 - Directory Listing
Modified Fri Nov 21 06:50:43 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	i changed the name of th server: pbil -> pbil.univ-lyon1.fr

Revision 318 - Directory Listing
Modified Thu Nov 20 14:17:18 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
translate.R

Revision 317 - Directory Listing
Modified Thu Nov 20 13:59:21 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
 dontrun car pb pour compile SEQINR.UTIL peut �e pas dans bon env

Revision 316 - Directory Listing
Modified Thu Nov 20 13:18:46 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
SeqFastadna.Rd

Revision 315 - Directory Listing
Modified Thu Nov 20 12:50:12 2003 UTC (14 years ago) by lobry
Original Path: trunk/seqinr
url changed

Revision 314 - Directory Listing
Modified Thu Nov 20 12:44:22 2003 UTC (14 years ago) by lobry
Original Path: trunk/seqinr
url changed

Revision 313 - Directory Listing
Modified Thu Nov 20 12:19:02 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
util.R

Revision 312 - Directory Listing
Modified Thu Nov 20 12:13:22 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
splitseq.Rd

Revision 311 - Directory Listing
Modified Thu Nov 20 12:11:28 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
invers.Rd

Revision 310 - Directory Listing
Modified Thu Nov 20 12:09:45 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
count.Rd

Revision 309 - Directory Listing
Modified Thu Nov 20 12:07:54 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
util.R

Revision 308 - Directory Listing
Modified Thu Nov 20 12:06:54 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
comp.Rd

Revision 307 - Directory Listing
Modified Thu Nov 20 11:11:33 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ACCESS

Revision 306 - Directory Listing
Modified Thu Nov 20 10:47:19 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 305 - Directory Listing
Modified Thu Nov 20 10:45:48 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 304 - Directory Listing
Modified Thu Nov 20 10:11:32 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	add removing file

Revision 303 - Directory Listing
Modified Thu Nov 20 09:27:56 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
mkbank.Rd

Revision 302 - Directory Listing
Modified Thu Nov 20 09:17:06 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
SeqAcnucLocal.Rd

Revision 301 - Directory Listing
Modified Thu Nov 20 09:16:45 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 300 - Directory Listing
Modified Thu Nov 20 09:08:41 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
query.socket.Rd

Revision 299 - Directory Listing
Modified Wed Nov 19 14:37:32 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
choosebank.Rd

Revision 298 - Directory Listing
Modified Wed Nov 19 14:34:34 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
read.fasta.Rd

Revision 297 - Directory Listing
Modified Wed Nov 19 14:20:00 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 296 - Directory Listing
Modified Wed Nov 19 14:19:40 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 295 - Directory Listing
Modified Wed Nov 19 14:13:55 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 294 - Directory Listing
Modified Wed Nov 19 13:56:49 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
choosebank.socket.Rd

Revision 293 - Directory Listing
Modified Wed Nov 19 13:46:17 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
Translate.Rd

Revision 292 - Directory Listing
Modified Wed Nov 19 13:39:44 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
query.socket.Rd

Revision 291 - Directory Listing
Modified Wed Nov 19 13:37:43 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 290 - Directory Listing
Modified Wed Nov 19 13:30:27 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 289 - Directory Listing
Modified Wed Nov 19 13:26:40 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 288 - Directory Listing
Modified Wed Nov 19 13:23:06 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
../R/ClassSeq.R

Revision 287 - Directory Listing
Modified Wed Nov 19 13:13:11 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
SeqFastadna.Rd

Revision 286 - Directory Listing
Modified Wed Nov 19 12:59:43 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 285 - Directory Listing
Modified Wed Nov 19 12:28:38 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
skew.R

Revision 284 - Directory Listing
Modified Wed Nov 19 12:28:08 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
skew.Rd

Revision 283 - Directory Listing
Modified Wed Nov 19 12:26:53 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
translate.Rd

Revision 282 - Directory Listing
Modified Wed Nov 19 12:08:30 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 281 - Directory Listing
Modified Wed Nov 19 10:37:54 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
SeqAcnucLocal.Rd

Revision 280 - Directory Listing
Modified Tue Nov 18 16:01:32 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
    lalala

Revision 279 - Directory Listing
Modified Tue Nov 18 15:47:29 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
choosebank.socket.Rd

Revision 278 - Directory Listing
Modified Tue Nov 18 15:43:32 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
getKeyword.Rd

Revision 277 - Directory Listing
Modified Tue Nov 18 15:34:42 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
    remove .last.lib

Revision 276 - Directory Listing
Modified Mon Nov 17 16:16:43 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 275 - Directory Listing
Modified Mon Nov 17 16:07:03 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
R_fasta.R

Revision 274 - Directory Listing
Modified Mon Nov 17 15:45:52 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
R_fasta.R

Revision 273 - Directory Listing
Modified Mon Nov 17 15:36:49 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
read.fasta.Rd

Revision 272 - Directory Listing
Modified Mon Nov 17 15:34:59 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
seqinr.R

Revision 271 - Directory Listing
Modified Mon Nov 17 14:51:47 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
Makefile

Revision 270 - Directory Listing
Modified Mon Nov 17 14:50:22 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
timing.c

Revision 269 - Directory Listing
Modified Mon Nov 17 14:47:44 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
 new file for demo

Revision 268 - Directory Listing
Modified Mon Nov 17 14:46:56 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
demo

Revision 267 - Directory Listing
Modified Mon Nov 17 14:45:18 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
Translate.Rd

Revision 266 - Directory Listing
Modified Mon Nov 17 14:36:37 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
scanAK.R

Revision 265 - Directory Listing
Modified Mon Nov 17 11:51:46 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
R_fasta.R

Revision 264 - Directory Listing
Modified Mon Nov 17 11:50:54 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
R_fasta.R

Revision 263 - Directory Listing
Modified Mon Nov 17 10:35:09 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
read.fasta.Rd

Revision 262 - Directory Listing
Modified Mon Nov 17 09:45:10 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq

Revision 261 - Directory Listing
Modified Mon Nov 17 09:44:49 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
seqAA.fasta

Revision 260 - Directory Listing
Modified Mon Nov 17 09:18:17 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 259 - Directory Listing
Modified Mon Nov 17 09:12:16 2003 UTC (14 years ago) by lobry
Original Path: trunk/seqinr
get.ncbi.Rd

Revision 258 - Directory Listing
Modified Mon Nov 17 09:12:06 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	j'ai rajout�es annotations comme attribut de la s�ence

Revision 257 - Directory Listing
Modified Fri Nov 14 13:04:51 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	Changement du num� du port pour les sockets. Desormais le port 5557 est ouvert
�'exterieur.

Revision 256 - Directory Listing
Modified Thu Nov 13 09:15:00 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
SeqAcnucWeb.Rd

Revision 255 - Directory Listing
Modified Thu Nov 13 09:06:42 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
SeqFastAA.Rd

Revision 254 - Directory Listing
Modified Wed Nov 12 14:40:28 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 253 - Directory Listing
Modified Mon Nov 10 15:19:43 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
R_acnuc.R

Revision 252 - Directory Listing
Modified Mon Nov 10 15:19:06 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
count.Rd

Revision 251 - Directory Listing
Modified Fri Nov 7 15:00:33 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	rajout d'un saut de ligne

Revision 250 - Directory Listing
Modified Fri Nov 7 10:12:18 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
�nt donn�e choix qui a � fait de repr�nter les s�unces d'ADN par des
minuscules, j'ai modifi�e jeu de donn�.

Revision 249 - Directory Listing
Modified Fri Nov 7 10:05:32 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	Ce fichier a � remani�n grande partie. Des classes de s�ences ont
� supprim�, d'autres ajout� et le nom des autres classes a � chang�

Revision 248 - Directory Listing
Modified Fri Nov 7 10:03:30 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	Etant donn�e choix qui a � fait de repr�nter les s�uncs d'ADN
par des minuscules, les fonctions ont � corrig�. La fonction uco2 a �
rajout�

Revision 247 - Directory Listing
Modified Fri Nov 7 10:01:19 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	Etant donn�e choix qui a � fait de repr�nter les s�uncs d'ADN
par des minuscules, les fonctions ont � corrig�.

Revision 246 - Directory Listing
Modified Fri Nov 7 09:59:21 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	Ces fonctions sont mises entre parenth� pendant un moment

Revision 245 - Directory Listing
Modified Fri Nov 7 09:58:20 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	Cette fonction se trouve d�rmais dans R_fasta.R

Revision 244 - Directory Listing
Modified Fri Nov 7 09:55:04 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	fonctions pour la  lecture de fichiers fasta.

Revision 243 - Directory Listing
Modified Fri Nov 7 09:53:20 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
	Voici les fonctions permettant d'interroger les banques ACNUC
par internet grace aux sockets.

Revision 242 - Directory Listing
Modified Fri Oct 31 16:15:42 2003 UTC (14 years ago) by lobry
Original Path: trunk/seqinr
Added the rot argument in doc

Revision 241 - Directory Listing
Modified Fri Oct 31 16:11:31 2003 UTC (14 years ago) by lobry
Original Path: trunk/seqinr
I have added a new functionality allowing to rotate the genome.

Revision 240 - Directory Listing
Modified Mon Oct 27 16:39:38 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
R_acnuc.R

Revision 239 - Directory Listing
Modified Mon Oct 27 15:57:47 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 238 - Directory Listing
Modified Mon Oct 27 15:40:50 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
tablecode.R

Revision 237 - Directory Listing
Modified Mon Oct 27 15:40:09 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
uco.Rd

Revision 236 - Directory Listing
Modified Mon Oct 27 15:13:26 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
SEQINR.UTIL.RData

Revision 235 - Directory Listing
Modified Mon Oct 27 15:12:47 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
util.c

Revision 234 - Directory Listing
Modified Mon Oct 27 15:10:45 2003 UTC (14 years ago) by charif
Original Path: trunk/seqinr
ClassSeq.R

Revision 233 - Directory Listing
Modified Fri Oct 24 12:15:15 2003 UTC (14 years, 1 month ago) by charif
Original Path: trunk/seqinr
util.c

Revision 232 - Directory Listing
Modified Wed Oct 22 11:51:25 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
Darwin and SunOS platforms implementation

Revision 231 - Directory Listing
Modified Wed Oct 22 11:49:02 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
Darwin and SunOS platforms implementation

Revision 230 - Directory Listing
Modified Mon Oct 20 10:58:49 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 229 - Directory Listing
Modified Mon Oct 20 10:53:52 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
first release

Revision 228 - Directory Listing
Modified Mon Oct 20 10:52:09 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
codoc fix

Revision 227 - Directory Listing
Modified Mon Oct 20 10:48:19 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
New functionality: works with single gbk file

Revision 226 - Directory Listing
Modified Wed Oct 15 14:11:56 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
change output separator to space

Revision 225 - Directory Listing
Modified Wed Oct 15 12:46:42 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
local use of ftp client

Revision 224 - Directory Listing
Modified Mon Oct 13 21:12:35 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
I have updated the doc

Revision 223 - Directory Listing
Modified Mon Oct 13 20:57:17 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
Attempt to list ftp dirs

Revision 222 - Directory Listing
Modified Mon Oct 13 12:10:04 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
adaptation to read.fasta

Revision 221 - Directory Listing
Modified Mon Oct 13 11:48:20 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 220 - Directory Listing
Modified Fri Oct 10 13:25:14 2003 UTC (14 years, 1 month ago) by charif
Original Path: trunk/seqinr
R_acnuc.c

Revision 219 - Directory Listing
Modified Fri Oct 10 13:19:56 2003 UTC (14 years, 1 month ago) by charif
Original Path: trunk/seqinr
	empty log message

Revision 218 - Directory Listing
Modified Fri Oct 10 09:45:09 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 217 - Directory Listing
Modified Wed Oct 8 09:26:35 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
dia.bactgensize.Rd

Revision 216 - Directory Listing
Modified Wed Oct 8 09:25:39 2003 UTC (14 years, 1 month ago) by lobry
Original Path: trunk/seqinr
bactgensize.R

Revision 215 - Directory Listing
Modified Wed Sep 24 08:24:40 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
R_acnuc.R

Revision 214 - Directory Listing
Modified Wed Sep 24 07:56:40 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
translate.R

Revision 213 - Directory Listing
Modified Mon Sep 22 12:16:39 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
R_acnuc.R

Revision 212 - Directory Listing
Modified Mon Sep 22 11:54:40 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
R_acnuc.R

Revision 211 - Directory Listing
Modified Mon Sep 22 09:48:40 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
mkbank.R

Revision 210 - Directory Listing
Modified Mon Sep 22 08:43:42 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
	I added (.

Revision 209 - Directory Listing
Modified Tue Sep 16 08:52:13 2003 UTC (14 years, 2 months ago) by lobry
Original Path: trunk/seqinr
Just a CVS test, ignore.

Revision 208 - Directory Listing
Modified Thu Sep 4 15:35:51 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 207 - Directory Listing
Modified Thu Sep 4 15:23:33 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 206 - Directory Listing
Modified Thu Sep 4 12:56:09 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 205 - Directory Listing
Modified Thu Sep 4 12:49:13 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 204 - Directory Listing
Modified Thu Sep 4 12:35:09 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
essai

Revision 203 - Directory Listing
Modified Thu Sep 4 12:34:49 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
essaiCVS: ----------------------------------------------------------------------
essai

Revision 202 - Directory Listing
Modified Thu Sep 4 12:34:26 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
	essai

Revision 201 - Directory Listing
Modified Thu Sep 4 12:00:16 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
	Nouvelle fonction permettant de g�rer des banques structur� ACNUC

Revision 200 - Directory Listing
Modified Wed Sep 3 11:39:08 2003 UTC (14 years, 2 months ago) by charif
Original Path: trunk/seqinr
	I added a test to know if an ACNUC data base is already in use.

Revision 199 - Directory Listing
Modified Fri Aug 1 09:14:12 2003 UTC (14 years, 3 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 198 - Directory Listing
Modified Fri Aug 1 09:12:22 2003 UTC (14 years, 3 months ago) by charif
Original Path: trunk/seqinr
	ss

Revision 197 - Directory Listing
Modified Fri Aug 1 09:11:38 2003 UTC (14 years, 3 months ago) by charif
Original Path: trunk/seqinr
	I created this new dataset documentation

Revision 196 - Directory Listing
Modified Fri Aug 1 09:08:32 2003 UTC (14 years, 3 months ago) by charif
Original Path: trunk/seqinr
	I created a new function plotGC

Revision 195 - Directory Listing
Modified Wed Jul 30 12:27:04 2003 UTC (14 years, 3 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 194 - Directory Listing
Modified Wed Jul 30 12:12:18 2003 UTC (14 years, 3 months ago) by charif
Original Path: trunk/seqinr
	I optimized the function.

Revision 193 - Directory Listing
Modified Fri Jul 25 11:36:39 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
	j'ai rendu visible SEQINR.UTIL

Revision 192 - Directory Listing
Modified Thu Jul 24 12:55:38 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
	J'ai modifi�es classes et rajout�a m�ode generique "summary" qui
donne le GC et la compo en base pour la classe SeqFastadna et qui donne le
pourcentage de chaque AA ainsi que le pourcentage des AA appartenant �es classes
physico-chimiques donn� pour la classe SeqFastAA.

Revision 191 - Directory Listing
Modified Thu Jul 24 12:52:47 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
	J'ai ot�e . devant l'objet SEQINR.UTIL...

Revision 190 - Directory Listing
Modified Thu Jul 24 12:52:19 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
	J'ai rajout�'attribut nom pour les classes de sequences SeqFastaAA et
SeqFastadna.

Revision 189 - Directory Listing
Modified Wed Jul 23 17:04:21 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
chmod to 644

Revision 188 - Directory Listing
Modified Wed Jul 23 15:22:37 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
	j'ai rajout�es fonctions g�riques pour les classes de s�ences

Revision 187 - Directory Listing
Modified Wed Jul 23 15:17:02 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 186 - Directory Listing
Modified Wed Jul 23 15:10:38 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
	Ce fichier r�lte de la concat�tion de toutes les "petites" functions

Revision 185 - Directory Listing
Modified Wed Jul 23 15:08:44 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 184 - Directory Listing
Modified Wed Jul 23 13:58:53 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
	CVS: ----------------------------------------------------------------------
	J'ai rajout�ne liste contenant les propri�s physico-chimiques des acides amin�	ainsi que le code g�tique �ne lettre.

Revision 183 - Directory Listing
Modified Tue Jul 22 15:00:44 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
	I changed path for library

Revision 182 - Directory Listing
Modified Tue Jul 22 13:34:22 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
tmp

Revision 181 - Directory Listing
Modified Tue Jul 22 13:33:49 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 180 - Directory Listing
Modified Tue Jul 22 13:33:03 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
tmp

Revision 179 - Directory Listing
Modified Tue Jul 22 13:28:25 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
bb.fasta

Revision 178 - Directory Listing
Modified Tue Jul 22 13:18:16 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 177 - Directory Listing
Modified Tue Jul 22 12:58:17 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
ACCESS

Revision 176 - Directory Listing
Modified Tue Jul 22 12:57:07 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
CVS

Revision 175 - Directory Listing
Modified Tue Jul 22 12:56:21 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 174 - Directory Listing
Modified Tue Jul 22 12:27:59 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
bb.fasta

Revision 173 - Directory Listing
Modified Tue Jul 22 12:20:14 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
	tata

Revision 172 - Directory Listing
Modified Tue Jul 22 12:15:58 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
	New file

Revision 171 - Directory Listing
Modified Tue Jul 22 12:07:48 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 170 - Directory Listing
Modified Tue Jul 22 12:01:26 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 169 - Directory Listing
Modified Mon Jul 21 16:47:36 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 168 - Directory Listing
Modified Mon Jul 21 16:37:48 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 167 - Directory Listing
Modified Fri Jul 11 08:54:18 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
	I added some comments

Revision 166 - Directory Listing
Modified Mon Jun 30 15:18:44 2003 UTC (14 years, 4 months ago) by charif
Original Path: trunk/seqinr
	I corrected some errors

Revision 165 - Directory Listing
Modified Wed Jun 25 15:57:02 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
ACCESS

Revision 164 - Directory Listing
Modified Wed Jun 25 14:00:13 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
gbemgener.c

Revision 163 - Directory Listing
Modified Wed Jun 25 13:03:15 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
.#acnucfile

Revision 162 - Directory Listing
Modified Wed Jun 25 13:02:49 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
.#mklink.csh

Revision 161 - Directory Listing
Modified Wed Jun 25 12:30:39 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
This script is used to create all the required symbolic links to
the acnuc sources

Revision 160 - Directory Listing
Modified Wed Jun 25 11:54:46 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
It works

Revision 159 - Directory Listing
Modified Wed Jun 25 11:52:47 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
gbemgener.c

Revision 158 - Directory Listing
Modified Wed Jun 25 09:25:27 2003 UTC (14 years, 4 months ago) by lobry
Original Path: trunk/seqinr
test adding a symbolic link

Revision 157 - Directory Listing
Modified Tue Jun 24 19:55:56 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
Changed Keyword to a strandard one

Revision 156 - Directory Listing
Modified Tue Jun 24 19:20:28 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
ACCESS

Revision 155 - Directory Listing
Modified Tue Jun 24 17:00:59 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
malM.fasta

Revision 154 - Directory Listing
Modified Tue Jun 24 16:59:33 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 153 - Directory Listing
Modified Mon Jun 23 11:57:11 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 152 - Directory Listing
Modified Mon Jun 23 11:55:27 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
bla bla bla

Revision 151 - Directory Listing
Modified Sun Jun 22 10:46:55 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
changed T to TRUE so that running example is OK

Revision 150 - Directory Listing
Modified Sun Jun 22 10:34:55 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
I have added a cleanup at the end of the example so that only the
chargaff dataset remains in the user workspace after running the
example(chargaff)

Revision 149 - Directory Listing
Modified Sat Jun 21 15:15:54 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 148 - Directory Listing
Modified Wed Jun 18 22:15:43 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 147 - Directory Listing
Modified Wed Jun 18 16:13:32 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
HELP

Revision 146 - Directory Listing
Modified Tue Jun 17 13:41:56 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 145 - Directory Listing
Modified Tue Jun 17 13:41:02 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
I have changed dotchart.uco() so that now an invisible list is returned
with all the infos to add extra graphics on the plot.

Revision 144 - Directory Listing
Modified Sat Jun 14 09:05:25 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
I have fixed a codoc mismatch for the name of the second argument
of function uco()

Revision 143 - Directory Listing
Modified Sat Jun 14 08:32:46 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
I have added a --force option in R CMD build command to force index
files to be updated automatically.

Revision 142 - Directory Listing
Modified Fri Jun 13 13:18:36 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
I have fixed a bug in dotchart.uco() that was linked to a non standard
use of s2c().

Revision 141 - Directory Listing
Modified Fri Jun 13 13:15:00 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
dotchart.uco.Rd

Revision 140 - Directory Listing
Modified Thu Jun 12 15:28:17 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
In function choosebank(), when printing ACNUC bank infos, I have changed
the print(foo) by a cat(foo,"\n") just to save space for the output (no
more line numbering and quotes).

Revision 139 - Directory Listing
Modified Thu Jun 12 12:40:22 2003 UTC (14 years, 5 months ago) by charif
Original Path: trunk/seqinr
	I removed a line

Revision 138 - Directory Listing
Modified Thu Jun 12 12:32:30 2003 UTC (14 years, 5 months ago) by charif
Original Path: trunk/seqinr
	I added s2c

Revision 137 - Directory Listing
Modified Thu Jun 12 12:31:17 2003 UTC (14 years, 5 months ago) by charif
Original Path: trunk/seqinr
	I changed function name

Revision 136 - Directory Listing
Modified Thu Jun 12 12:11:51 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
I have added two new things within the choosebank() function:

i) Try now to detect if seqinr is running thru the RWeb interface
   at pbil.univ-lyon1.fr so as to assign correctly banks location

ii) Print the basic infos about the database

Revision 135 - Directory Listing
Modified Sat Jun 7 12:29:52 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
The example was wrong (c2s instead of s2c!), this is fixed now.

Revision 134 - Directory Listing
Modified Fri Jun 6 13:19:57 2003 UTC (14 years, 5 months ago) by charif
Original Path: trunk/seqinr
	I added the function s2c writing in C language. This function replace
         the old version of s2c.

Revision 133 - Directory Listing
Modified Fri Jun 6 13:17:20 2003 UTC (14 years, 5 months ago) by charif
Original Path: trunk/seqinr
	I removed this function in oreder to replace it by a C function
        to speed up the execution

Revision 132 - Directory Listing
Modified Fri Jun 6 13:02:36 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
I have changed the read.fasta()[[1]] to read.fasta[[1]][[1]] to get the
default genome for demo.

Revision 131 - Directory Listing
Modified Thu Jun 5 13:32:44 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 130 - Directory Listing
Modified Thu Jun 5 13:31:54 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
I have added a new function, dotchart.uco() to display a Cleveland dotplot
for codon usage.

Revision 129 - Directory Listing
Modified Thu Jun 5 12:02:44 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 128 - Directory Listing
Modified Wed Jun 4 15:34:31 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 127 - Directory Listing
Modified Mon Jun 2 12:34:02 2003 UTC (14 years, 5 months ago) by charif
Original Path: trunk/seqinr
	I corrected some bug in getExon

Revision 126 - Directory Listing
Modified Wed May 28 16:30:08 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
I have shortened the title and homogenized horizontal lines length.

Revision 125 - Directory Listing
Modified Wed May 28 13:23:26 2003 UTC (14 years, 5 months ago) by charif
Original Path: trunk/seqinr
	I added two functions:
	-scanKeyword
	-scanAnnots

Revision 124 - Directory Listing
Modified Tue May 27 15:59:47 2003 UTC (14 years, 5 months ago) by charif
Original Path: trunk/seqinr
	I modified getFrag.SeqReq and getLength.SeqReq
	I added getProp.SeqReq, fto have some information about the sequence

Revision 123 - Directory Listing
Modified Tue May 27 15:58:28 2003 UTC (14 years, 5 months ago) by charif
Original Path: trunk/seqinr
	I added two functions:
		-getAnnots
		-getAttribut

Revision 122 - Directory Listing
Modified Mon May 26 13:32:59 2003 UTC (14 years, 5 months ago) by lobry
Original Path: trunk/seqinr
new text in graph added

Revision 121 - Directory Listing
Modified Sat May 24 15:59:48 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have added a default value for the argument bankname of the function
choosebank() so that the "assign(bankname,.GlobalEnv)" statement works
even when the bankname argument is missing.

I'am not sure to understand this statment: shouldn't a value argument
be given to assign ?

Revision 120 - Directory Listing
Modified Sat May 24 15:12:20 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
Few typos fixed

Revision 119 - Directory Listing
Modified Sat May 24 15:06:33 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 118 - Directory Listing
Modified Fri May 23 22:52:53 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 117 - Directory Listing
Modified Fri May 23 20:56:50 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
more references

Revision 116 - Directory Listing
Modified Fri May 23 16:35:24 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 115 - Directory Listing
Modified Fri May 23 16:27:30 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have just added a dot before the "SEQINR.UTIL" variable.

Revision 114 - Directory Listing
Modified Fri May 23 15:43:57 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 113 - Directory Listing
Modified Fri May 23 13:57:53 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 112 - Directory Listing
Modified Thu May 22 20:05:27 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have just fixed few typos and added a reference to the IUPAC.

Revision 111 - Directory Listing
Modified Thu May 22 19:32:03 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 110 - Directory Listing
Modified Thu May 22 14:55:50 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	i corrected a bug

Revision 109 - Directory Listing
Modified Thu May 22 13:34:51 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	i added  assign(bankname,.GlobalEnv)

Revision 108 - Directory Listing
Modified Thu May 22 13:24:16 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	i removed this file

Revision 107 - Directory Listing
Modified Thu May 22 13:23:09 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	i repared error

Revision 106 - Directory Listing
Modified Thu May 22 13:15:31 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	i added parenthesis

Revision 105 - Directory Listing
Modified Thu May 22 12:58:26 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	I repared error I had introduiced
i repared error i introduiced

Revision 104 - Directory Listing
Modified Thu May 22 12:57:21 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	I repared error I had introduiced

Revision 103 - Directory Listing
Modified Thu May 22 12:26:41 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	i removed this file.

Revision 102 - Directory Listing
Modified Thu May 22 12:23:56 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	i changed the name of the data SEQINR.UTIL : .SEQINR.UTIL

Revision 101 - Directory Listing
Modified Thu May 22 12:10:58 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	i added \n

Revision 100 - Directory Listing
Modified Thu May 22 12:06:57 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	i added two functions getKey and getExon

Revision 99 - Directory Listing
Modified Thu May 22 12:06:22 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	i added two functions: getKey and getExon

Revision 98 - Directory Listing
Modified Wed May 21 08:47:01 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	I added a parenthesis

Revision 97 - Directory Listing
Modified Tue May 20 14:58:32 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
         --m

Revision 96 - Directory Listing
Modified Tue May 20 14:58:12 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	i have forgotten what i changed

Revision 95 - Directory Listing
Modified Tue May 20 14:55:44 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	i initialised the class SeqReq in getreq()

Revision 94 - Directory Listing
Modified Tue May 20 14:18:16 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	I removed the classes that i transfered in the file ClassSeq.R

Revision 93 - Directory Listing
Modified Tue May 20 14:15:43 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	this file contain the differents classes and methodes for the sequences

Revision 92 - Directory Listing
Modified Tue May 20 14:12:42 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	I added the class of the sequences

Revision 91 - Directory Listing
Modified Tue May 20 08:30:50 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
This file is required to use the "methods" package, see ?INSTALL under R

Revision 90 - Directory Listing
Modified Tue May 20 08:29:02 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have added the require("methods") so that we can use this package

Revision 89 - Directory Listing
Modified Mon May 19 09:02:41 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	SEQINR.UTIL is a list containing two dataframe:
	 -the genetics code
	 -the amino-acid + codon

Revision 88 - Directory Listing
Modified Sun May 18 14:48:23 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 87 - Directory Listing
Modified Sun May 18 10:36:34 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
New update received from Christian Gautier by email today.

Revision 86 - Directory Listing
Modified Sat May 17 13:19:33 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
A new argument "base4 = TRUE" was added so that by default the numerical
encoding starts at 0.

Revision 85 - Directory Listing
Modified Sat May 17 13:17:26 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
Documentation of the base4 argument and more examples added.

Revision 84 - Directory Listing
Modified Fri May 16 14:33:14 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have added a dot-dot-dot argument to print.requete() to remove one
warning during the checking generic/method consistency.

Revision 83 - Directory Listing
Modified Fri May 16 11:54:01 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have added a link to n2s()

Revision 82 - Directory Listing
Modified Fri May 16 11:28:28 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 81 - Directory Listing
Modified Fri May 16 11:27:28 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
conversion of a vector of integers into a DNA sequence

Revision 80 - Directory Listing
Modified Thu May 15 21:14:15 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
First release of the doc.

Revision 79 - Directory Listing
Modified Thu May 15 21:12:11 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
This is an alternative to seq2num.

Revision 78 - Directory Listing
Modified Thu May 15 16:32:29 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	I corrected some failures

Revision 77 - Directory Listing
Modified Thu May 15 16:31:14 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
*** empty log message ***

Revision 76 - Directory Listing
Modified Thu May 15 15:52:20 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	doc for the function translate.R

Revision 75 - Directory Listing
Modified Thu May 15 15:48:03 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	doc for the function uco.R

Revision 74 - Directory Listing
Modified Thu May 15 15:47:00 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	doc for the function splitseq.R

Revision 73 - Directory Listing
Modified Thu May 15 15:46:14 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	doc for the function count.R

Revision 72 - Directory Listing
Modified Thu May 15 15:45:22 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	 doc for the function comp.R

Revision 71 - Directory Listing
Modified Thu May 15 15:20:25 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have deleted the function s2c that was already present in the package.

Revision 70 - Directory Listing
Modified Thu May 15 13:28:13 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
This file was send to me by e-mail today by Christian Gautier.

Revision 69 - Directory Listing
Modified Thu May 15 08:09:54 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
ACNUC database demo (enterobacterial complete genomes)

Revision 68 - Directory Listing
Modified Wed May 14 14:14:22 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
 ACNUC database demo (enterobacterial complete genomes)

Revision 67 - Directory Listing
Modified Wed May 14 14:10:46 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have added a default behaviour to choosebank() so that it opens the
local distribution of ACNUC database if noting is available

Revision 66 - Directory Listing
Modified Tue May 13 20:37:25 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have changed the example to fix a typo in the y-axis label and to
put species name in italic font in the main title.

Revision 65 - Directory Listing
Modified Tue May 13 18:54:49 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have run chmod 644 on the file to set up the mandatory permissions
for source files. These are apparently disturbed by some text editors
such as nedit on the Sun and BBEdit on the mac.

Revision 64 - Directory Listing
Modified Tue May 13 15:06:50 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	I changed variable's name and i added names for the dataframe.

Revision 63 - Directory Listing
Modified Tue May 13 15:01:56 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	I changed variable's name

Revision 62 - Directory Listing
Modified Tue May 13 14:34:26 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	I corrected some bugs and changed variable's name.

Revision 61 - Directory Listing
Modified Mon May 12 16:13:14 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	ajout d'un retour chariot �a fin des fonctions.

Revision 60 - Directory Listing
Modified Mon May 12 15:36:29 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	modification mineure

Revision 59 - Directory Listing
Modified Mon May 12 15:26:26 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	regroupement des trois fonctions uco.table, uco.freq, uco en une seule:
	uco(...)

Revision 58 - Directory Listing
Modified Mon May 12 14:57:26 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	fusion des fonctions codon.R et twoseq.R dans une meme fonction
splitseq.R.

Revision 57 - Directory Listing
Modified Mon May 12 14:48:06 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
	G�ralisation de la fonction count(). Desormais on peut obtenir le
        comptage des n-nucl�ides.

Revision 56 - Directory Listing
Modified Thu May 8 05:56:46 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
Borrelia burgdorferi genome

Revision 55 - Directory Listing
Modified Thu May 1 20:08:58 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
First doc for oriloc

Revision 54 - Directory Listing
Modified Thu May 1 20:07:58 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
First preliminary release of oriloc

Revision 53 - Directory Listing
Modified Thu May 1 11:56:49 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have changed the line to copy the sequence folder in /library/seqinr
because it didn't work when there was more than on file (a folder
sequences was created within the folder sequences).

Revision 52 - Directory Listing
Modified Thu May 1 11:31:00 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
Put the oriloc coord file example

Revision 51 - Directory Listing
Modified Thu May 1 00:39:51 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
In getseq() I have changed class(x) <- sequence to class(x) <- c("sequence")
so that it does not complain. I have also compacted a little bit the
code thanks to the c2s() utility and by code factorization in the if/else.

Revision 50 - Directory Listing
Modified Wed Apr 30 23:52:04 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have moved choixbanque() to choosebank() but keep choixbanque() as
an alias so that it still runs. The function checks now that there
is an nonempty argument and that it's possible to get something from
Sys.getenv() so that it does not exit to console in these cases.

Revision 49 - Directory Listing
Modified Wed Apr 30 23:14:55 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
chmod to 644

Revision 48 - Directory Listing
Modified Wed Apr 30 23:09:23 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
lseqinr.Rd

Revision 47 - Directory Listing
Modified Wed Apr 30 23:08:42 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
lseqinr.R

Revision 46 - Directory Listing
Modified Wed Apr 30 22:50:01 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
I have run chmod 644 on the file to set up the mandatory permissions
for source files. These are apparently disturbed by some text editors
such as nedit on the Sun and BBEdit on the mac.

Revision 45 - Directory Listing
Modified Tue Apr 29 12:14:04 2003 UTC (14 years, 6 months ago) by perriere
Original Path: trunk/seqinr
Comment lines shortened

Revision 44 - Directory Listing
Modified Tue Apr 29 12:07:54 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 43 - Directory Listing
Modified Tue Apr 29 11:13:25 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 42 - Directory Listing
Modified Mon Apr 28 09:15:55 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
essai des droits du groupe seqinr

Revision 41 - Directory Listing
Modified Sun Apr 27 14:55:14 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 40 - Directory Listing
Modified Sun Apr 27 14:52:05 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
doc for arguments Moore and ... added

Revision 39 - Directory Listing
Modified Sun Apr 27 14:50:40 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
db.growth.R

Revision 38 - Directory Listing
Modified Sun Apr 27 14:49:46 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
the moore's law wish in dia.db.growth() is fullfilled

Revision 37 - Directory Listing
Modified Sun Apr 27 13:23:17 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 36 - Directory Listing
Modified Sun Apr 27 13:22:35 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
First attempt to put a dataset

Revision 35 - Directory Listing
Modified Sun Apr 27 12:45:29 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
the argument get.db.growth.out is now documented

Revision 34 - Directory Listing
Modified Sun Apr 27 08:58:22 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
one more wish, for dia.db.growth()

Revision 33 - Directory Listing
Modified Sun Apr 27 08:48:37 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 32 - Directory Listing
Modified Sat Apr 26 16:33:01 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 31 - Directory Listing
Modified Sat Apr 26 15:27:56 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 30 - Directory Listing
Modified Sat Apr 26 14:30:02 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
keywords changed

Revision 29 - Directory Listing
Modified Sat Apr 26 09:58:33 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 28 - Directory Listing
Modified Sat Apr 26 09:56:36 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
string -> chars

Revision 27 - Directory Listing
Modified Sat Apr 26 09:55:34 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
chars -> string

Revision 26 - Directory Listing
Modified Fri Apr 25 12:53:24 2003 UTC (14 years, 6 months ago) by cgautier
Original Path: trunk/seqinr
ok

Revision 25 - Directory Listing
Modified Fri Apr 25 11:37:44 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
*** empty log message ***

Revision 24 - Directory Listing
Modified Fri Apr 25 11:32:13 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
package -> seqinr

Revision 23 - Directory Listing
Modified Fri Apr 25 11:16:12 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
package -> seqinr

Revision 22 - Directory Listing
Modified Fri Apr 25 09:25:34 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
package -> seqinr

Revision 21 - Directory Listing
Modified Fri Apr 25 09:06:34 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
just a test of cvs

Revision 20 - Directory Listing
Modified Fri Apr 25 08:34:25 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
Ooops ! A right parenthesis was missing

Revision 19 - Directory Listing
Modified Fri Apr 25 08:21:50 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
   ajout de la fonction translate

Revision 18 - Directory Listing
Modified Fri Apr 25 08:20:19 2003 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr
  ajout de la fonction translateCDS

Revision 17 - Directory Listing
Modified Fri Apr 25 08:18:42 2003 UTC (14 years, 6 months ago) by lobry
Original Path: trunk/seqinr
Put the oriloc fasta file example

Revision 16 - Directory Listing
Modified Thu Apr 24 11:43:23 2003 UTC (14 years, 7 months ago) by lobry
Original Path: trunk/seqinr
I have replaced "seqinr" by "package"

Revision 15 - Directory Listing
Modified Thu Apr 24 11:38:10 2003 UTC (14 years, 7 months ago) by lobry
Original Path: trunk/seqinr
'\n' added

Revision 14 - Directory Listing
Modified Thu Apr 24 11:36:47 2003 UTC (14 years, 7 months ago) by lobry
Original Path: trunk/seqinr
'\n' added + pretty indentation

Revision 13 - Directory Listing
Modified Thu Apr 24 11:15:21 2003 UTC (14 years, 7 months ago) by lobry
Original Path: trunk/seqinr
I have run dos2unix

Revision 12 - Directory Listing
Modified Thu Apr 24 11:05:28 2003 UTC (14 years, 7 months ago) by lobry
Original Path: trunk/seqinr
I have changed the dos-like end of line into unix-like end of line
with the command: dos2unix translate.R translate.R

Revision 11 - Directory Listing
Modified Thu Apr 24 08:50:05 2003 UTC (14 years, 7 months ago) by lobry
Original Path: trunk/seqinr
I have changed the "seqinr" by "package" just to see if it's
possible to compile !

Revision 10 - Directory Listing
Added Wed Apr 23 08:08:21 2003 UTC (14 years, 7 months ago) by ade2001
Original Path: trunk/seqinr
This commit was generated by cvs2svn to compensate for changes in r3,
which included commits to RCS files with non-trunk default branches.

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