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View of /branches/Matrix-mer2/src/lmer.h

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Revision 1092 - (download) (as text) (annotate)
Tue Dec 13 00:26:11 2005 UTC (13 years, 9 months ago) by bates
File size: 1725 byte(s)
Messing with the Laplace approximation

#include "Mutils.h"
#include "triplet_to_col.h"
#include "dgCMatrix.h"
#include "dpoMatrix.h"
#include "R_ldl.h"
#include "dsCMatrix.h"
#include "dtCMatrix.h"
#include "lgCMatrix.h"
#include "lCholCMatrix.h"
#include "Rmath.h"
#include "chm_common.h"
#include <R_ext/Lapack.h>
#include <R_ext/Constants.h>
#include <R_ext/Utils.h>

SEXP Matrix_rWishart(SEXP ns, SEXP df, SEXP scal);
SEXP glmer_MCMCsamp(SEXP GSpt, SEXP b, SEXP fixedp, SEXP varcp,
		    SEXP savebp, SEXP nsampp);
SEXP glmer_devAGQ(SEXP pars, SEXP GSp, SEXP nAGQp);
SEXP glmer_devLaplace(SEXP pars, SEXP GSp);
SEXP glmer_finalize(SEXP GSpt);
SEXP glmer_fixed_update(SEXP GSp, SEXP b, SEXP fixed);
SEXP glmer_init(SEXP rho);
SEXP glmer_ranef_update(SEXP GSp, SEXP fixed, SEXP varc, SEXP b);
SEXP mer_ECMEsteps(SEXP x, SEXP nsteps, SEXP Verbp);
SEXP mer_Hessian(SEXP x);
SEXP mer_MCMCsamp(SEXP x, SEXP savebp, SEXP nsampp, SEXP transp);
SEXP mer_coef(SEXP x, SEXP pType);
SEXP mer_coefGets(SEXP x, SEXP coef, SEXP pType);
SEXP mer_create(SEXP fl, SEXP Zt, SEXP Xp, SEXP yp, SEXP method,
		 SEXP nc, SEXP cnames, SEXP useS, SEXP call,
		 SEXP family);
SEXP mer_dtCMatrix(SEXP x);
SEXP mer_dtCMatrix_inv(SEXP x);
SEXP mer_factor(SEXP x);
SEXP mer_fitted(SEXP x, SEXP useFe, SEXP useRe);
SEXP mer_fixef(SEXP x);
SEXP mer_gradComp(SEXP x);
SEXP mer_gradient(SEXP x, SEXP pType);
SEXP mer_initial(SEXP x);
SEXP mer_pMatrix(SEXP x);
SEXP mer_ranef(SEXP x);
SEXP mer_secondary(SEXP x);
SEXP mer_sigma(SEXP x, SEXP REML);
SEXP mer_simulate(SEXP x, SEXP nsimP);
SEXP mer_update_ZXy(SEXP x);
SEXP mer_update_y(SEXP x, SEXP ynew);
SEXP mer_validate(SEXP x);
SEXP Zt_create(SEXP fl, SEXP Ztl);

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