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View of /branches/Matrix-mer2/src/lmer.h

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Revision 1003 - (download) (as text) (annotate)
Wed Nov 2 21:30:27 2005 UTC (14 years, 2 months ago) by bates
File size: 2309 byte(s)
Unsuccessful attempt to add IPLS iterations
#ifndef MATRIX_LMER_H
#define MATRIX_LMER_H

#include "Mutils.h"
#include "triplet_to_col.h"
#include "dgBCMatrix.h"
#include "dgCMatrix.h"
#include "Metis_utils.h"
#include "R_ldl.h"
#include "dsCMatrix.h"
#include "dtCMatrix.h"
#include "lgCMatrix.h"
#include "lCholCMatrix.h"
#include "Rmath.h"
#include "chm_common.h"
#include <R_ext/Lapack.h>
#include <R_ext/Constants.h>

SEXP Matrix_rWishart(SEXP ns, SEXP df, SEXP scal);
SEXP lmer_MCMCsamp(SEXP x, SEXP savebp, SEXP nsampp, SEXP transp);
SEXP lmer_validate(SEXP x);
SEXP lmer_update_mm(SEXP x, SEXP mmats);
SEXP lmer_create(SEXP flist, SEXP mmats, SEXP method);
SEXP lmer_inflate(SEXP x);
SEXP lmer_initial(SEXP x);
SEXP lmer_factor(SEXP x);
SEXP lmer_invert(SEXP x);
SEXP lmer_sigma(SEXP x, SEXP REML);
SEXP lmer_coef(SEXP x, SEXP pType);
SEXP lmer_coefGets(SEXP x, SEXP coef, SEXP pType);
SEXP lmer_fixef(SEXP x);
SEXP lmer_ranef(SEXP x);
SEXP lmer_ECMEsteps(SEXP x, SEXP nsteps, SEXP Verbp);
SEXP lmer_fitted(SEXP x, SEXP mmats, SEXP useRf);
SEXP lmer_gradient(SEXP x, SEXP pType);
SEXP lmer_variances(SEXP x);
SEXP lmer_Crosstab(SEXP flist);
SEXP lmer_firstDer(SEXP x, SEXP val);
SEXP lmer_secondDer(SEXP x);
SEXP glmer_MCMCsamp(SEXP GSpt, SEXP b, SEXP fixedp, SEXP varcp,
		    SEXP savebp, SEXP nsampp);
SEXP glmer_PQL(SEXP GSp);
SEXP glmer_ranef_update(SEXP GSp, SEXP fixed, SEXP varc, SEXP b);
SEXP glmer_devAGQ(SEXP pars, SEXP GSp, SEXP nAGQp);
SEXP glmer_finalize(SEXP GSpt);
SEXP glmer_fixed_update(SEXP GSp, SEXP b, SEXP fixed);
SEXP glmer_init(SEXP rho);
SEXP lmer_simulate(SEXP x, SEXP np, SEXP fxdp, SEXP mmats,
		   SEXP useScP);
SEXP lmer_update_y(SEXP x, SEXP y, SEXP mm);
SEXP lmer_set_initial(SEXP x, SEXP iv);
SEXP mer2_IPLSiter(SEXP x, SEXP nitP);
SEXP mer2_MCMCsamp(SEXP x, SEXP savebp, SEXP nsampp, SEXP transp);
SEXP mer2_coef(SEXP x, SEXP pType);
SEXP mer2_coefGets(SEXP x, SEXP coef, SEXP pType);
SEXP mer2_create(SEXP fl, SEXP Ztl, SEXP Xp, SEXP yp, SEXP method);
SEXP mer2_dtCMatrix(SEXP x);
SEXP mer2_dtCMatrix_inv(SEXP x);
SEXP mer2_factor(SEXP x);
SEXP mer2_fitted(SEXP x, SEXP useFe, SEXP useRe);
SEXP mer2_fixef(SEXP x);
SEXP mer2_initial(SEXP x);
SEXP mer2_pMatrix(SEXP x);
SEXP mer2_ranef(SEXP x);
SEXP mer2_sigma(SEXP x, SEXP REML);
SEXP mer2_simulate(SEXP x, SEXP np, SEXP fxdp, SEXP mmats, SEXP useScP);

#endif

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