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Log of /branches/Matrix-for-R-2.3.x

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Sticky Revision:

Revision 1584 - Directory Listing
Modified Tue Sep 19 20:00:40 2006 UTC (12 years, 10 months ago) by bates
Fix error in example in mcmcsamp.Rd with new version of lattice

Revision 1567 - Directory Listing
Modified Fri Sep 15 15:48:45 2006 UTC (12 years, 10 months ago) by maechler
port  graph-Fixes from the trunk; update Version number

Revision 1566 - Directory Listing
Modified Fri Sep 15 14:08:44 2006 UTC (12 years, 10 months ago) by maechler
remove the unfinished intro from the *branch* (only)

Revision 1559 - Directory Listing
Modified Wed Sep 13 19:50:14 2006 UTC (12 years, 10 months ago) by bates
Version 0.995-18 fixing problem with lmer(resp ~ 1|grp,

Revision 1509 - Directory Listing
Modified Mon Sep 4 19:39:57 2006 UTC (12 years, 10 months ago) by bates
Apparently need aliases for both chol,pedigree-method and chol,pedigree,ANY-method

Revision 1508 - Directory Listing
Modified Mon Sep 4 19:08:07 2006 UTC (12 years, 10 months ago) by bates
New generic for chol requires change in signature in doc

Revision 1483 - Directory Listing
Modified Sat Sep 2 17:02:59 2006 UTC (12 years, 10 months ago) by maechler
oops: 'Depends: R (== 2.3.1)' seems impossible even when trying to use
      ">=" and "<=" ...

Revision 1482 - Directory Listing
Modified Sat Sep 2 17:00:30 2006 UTC (12 years, 10 months ago) by maechler
make the dependency on "only R 2.3.1" explicit

Revision 1480 - Directory Listing
Modified Sat Sep 2 16:36:14 2006 UTC (12 years, 10 months ago) by maechler
Copied from: pkg revision 1479
branching an "old-R" compatible version of Matrix

Revision 1479 - Directory Listing
Modified Fri Sep 1 23:17:59 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
What was I thinking?  I checked in files without running R CMD check and adding documentation for methods.  Now fixed.

Revision 1478 - Directory Listing
Modified Fri Sep 1 23:16:49 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
*** empty log message ***

Revision 1477 - Directory Listing
Modified Fri Sep 1 23:13:35 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Increment version number after last upload.

Revision 1476 - Directory Listing
Modified Fri Sep 1 22:49:10 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Remove redundant method.

Revision 1475 - Directory Listing
Modified Fri Sep 1 22:35:59 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
*** empty log message ***

Revision 1474 - Directory Listing
Modified Fri Sep 1 22:35:29 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Added direct method to CsparseMatrix from graphNEL

Revision 1473 - Directory Listing
Modified Fri Sep 1 15:43:32 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
typo

Revision 1472 - Directory Listing
Modified Fri Sep 1 15:31:04 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
miscellaneous tweaks; moved some method definitions higher up

Revision 1471 - Directory Listing
Modified Fri Sep 1 15:21:02 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
new, probably temporary

Revision 1470 - Directory Listing
Modified Fri Sep 1 13:30:52 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Remove unused name in ddense_band

Revision 1469 - Directory Listing
Modified Fri Sep 1 10:02:29 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
minor update

Revision 1468 - Directory Listing
Modified Thu Aug 31 15:12:09 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Date for release

Revision 1467 - Directory Listing
Modified Wed Aug 30 21:35:09 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
several smallish fixes

Revision 1466 - Directory Listing
Modified Wed Aug 30 03:35:53 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
housekeeping

Revision 1465 - Directory Listing
Modified Wed Aug 30 03:05:59 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
housekeeping

Revision 1464 - Directory Listing
Modified Wed Aug 30 03:05:06 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
housekeeping

Revision 1463 - Directory Listing
Modified Tue Aug 29 22:30:57 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Promotion of %*% and solve to RHS of ddenseMatrix

Revision 1462 - Directory Listing
Modified Tue Aug 29 16:34:49 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Generalize %*% methods for sparse matrices

Revision 1461 - Directory Listing
Modified Tue Aug 29 16:17:27 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Define and use class_P and mMatrix_as_dgeMatrix

Revision 1460 - Directory Listing
Modified Tue Aug 29 14:07:52 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Promote %*% methods to ddenseMatrix class

Revision 1459 - Directory Listing
Modified Tue Aug 29 07:18:18 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
cosmetic change in show()

Revision 1458 - Directory Listing
Modified Tue Aug 29 00:04:48 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Remove vestigial classed argument for dsCMatrix_matrix_solve

Revision 1457 - Directory Listing
Modified Mon Aug 28 16:34:18 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
very first skeleton at new Intro

Revision 1456 - Directory Listing
Modified Mon Aug 28 15:36:16 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
Arith( dMatrix, dMatrix)

Revision 1455 - Directory Listing
Modified Mon Aug 28 15:35:44 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
Matrix(*, forceCheck)

Revision 1454 - Directory Listing
Modified Mon Aug 28 13:00:39 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
references

Revision 1453 - Directory Listing
Modified Sun Aug 27 16:16:35 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Added triu, tril and band for ddenseMatrix objects.

Revision 1452 - Directory Listing
Modified Sat Aug 26 18:24:13 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
tril,triu,band: triangular only if "square"

Revision 1451 - Directory Listing
Modified Sat Aug 26 17:25:57 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Added initial version of dgeMatrix_band but may change design

Revision 1450 - Directory Listing
Modified Sat Aug 26 13:01:22 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Direct call to dup_mMatrix_as_dgeMatrix

Revision 1449 - Directory Listing
Modified Sat Aug 26 13:00:36 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Remove sections of code that are no longer used

Revision 1448 - Directory Listing
Modified Sat Aug 26 03:29:36 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Move methods to the CsparseMatrix class

Revision 1447 - Directory Listing
Modified Fri Aug 25 20:38:36 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

Revision 1446 - Directory Listing
Modified Fri Aug 25 16:48:32 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Change incorrect result class dgCMatrix to dgeMatrix.

Revision 1445 - Directory Listing
Modified Fri Aug 25 14:54:54 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Bug fix due to Emmanuel Tillard

Revision 1444 - Directory Listing
Modified Fri Aug 25 14:39:45 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
a bit more "MatrixFactorization" ..

Revision 1443 - Directory Listing
Modified Fri Aug 25 10:44:48 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
1st stab at "MatrixFactorization" class; exporting CHMfactor etc

Revision 1442 - Directory Listing
Modified Thu Aug 24 22:08:11 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg


Revision 1441 - Directory Listing
Modified Thu Aug 24 21:59:49 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Add ddiMatrix,dtpMatrix, dspMatrix and dppMatrix conversions. Remove no-longer-used functions.

Revision 1440 - Directory Listing
Modified Thu Aug 24 18:34:18 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Use dup_mMatrix_as_dgeMatrix

Revision 1439 - Directory Listing
Modified Thu Aug 24 18:24:50 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg


Revision 1438 - Directory Listing
Modified Thu Aug 24 18:23:36 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Replaced R_ldl etc. by CHOLMOD functions

Revision 1437 - Directory Listing
Modified Thu Aug 24 18:23:11 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Replaced R_ldl etc. by CHOLMOD functions

Revision 1436 - Directory Listing
Modified Thu Aug 24 18:22:39 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Use dup_mMatrix_as_dgeMatrix

Revision 1435 - Directory Listing
Modified Thu Aug 24 18:20:36 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Replaced by CHOLMOD functions

Revision 1434 - Directory Listing
Modified Thu Aug 24 18:20:02 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Added

Revision 1433 - Directory Listing
Modified Thu Aug 24 18:19:36 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Replaced by CHOLMOD functions

Revision 1432 - Directory Listing
Modified Thu Aug 24 16:21:18 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
eliminate classed argument from dup_mM*() and dependencies

Revision 1431 - Directory Listing
Modified Wed Aug 23 22:13:53 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg


Revision 1430 - Directory Listing
Modified Wed Aug 23 22:13:34 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Paring down dependencies

Revision 1429 - Directory Listing
Modified Wed Aug 23 22:12:52 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

Revision 1428 - Directory Listing
Modified Wed Aug 23 21:32:30 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Disable chol methods for lsCMatrix class temporarily; Comment out old code in src/lsCMatrix.[ch]

Revision 1427 - Directory Listing
Modified Wed Aug 23 21:29:22 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Add Cholesky generic and method for dsCMatrix.  Use CHOLMOD for chol().

Revision 1426 - Directory Listing
Modified Wed Aug 23 21:27:04 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Ensure 'factors' slot exists in result of dgeMatrix_crossprod (may need to do this in other places).

Revision 1425 - Directory Listing
Modified Wed Aug 23 21:25:32 2006 UTC (12 years, 10 months ago) by bates
Original Path: pkg
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

Revision 1424 - Directory Listing
Modified Wed Aug 23 14:26:19 2006 UTC (12 years, 10 months ago) by maechler
Original Path: pkg
comments; cosmetic

Revision 1423 - Directory Listing
Modified Tue Aug 22 22:51:56 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
*** empty log message ***

Revision 1422 - Directory Listing
Modified Tue Aug 22 22:51:23 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Replace ssc_transpose call

Revision 1421 - Directory Listing
Modified Tue Aug 22 22:50:38 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Comment out vestigial functions

Revision 1420 - Directory Listing
Modified Tue Aug 22 22:49:40 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg


Revision 1419 - Directory Listing
Modified Tue Aug 22 22:49:17 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
use diag_P and uplo_P macros

Revision 1418 - Directory Listing
Modified Tue Aug 22 22:47:37 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Comment out vestigial functions

Revision 1417 - Directory Listing
Modified Tue Aug 22 22:46:07 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Use CHOLMOD for dsCMatrix_chol and dsCMatrix_matrix_solve.

Revision 1416 - Directory Listing
Modified Tue Aug 22 22:44:14 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Move check_class to Mutils.h and some bug fixes

Revision 1415 - Directory Listing
Modified Tue Aug 22 18:06:54 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Misunderstood effect of make_d_matrix_triangular and make_d_matrix_symmetric.  Now fixed.  Use _NOT_A_CLASS_ instead of dmatrix for the name of the class that should not occur.

Revision 1414 - Directory Listing
Modified Tue Aug 22 17:25:43 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
*** empty log message ***

Revision 1413 - Directory Listing
Modified Tue Aug 22 17:25:24 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
register dup_mMatrix_as_dgeMatrix for coercions.

Revision 1412 - Directory Listing
Modified Tue Aug 22 17:23:39 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
updated for general types of classed Matrices, matrices or numeric or logical vectors.

Revision 1411 - Directory Listing
Modified Tue Aug 22 01:01:23 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
*** empty log message ***

Revision 1410 - Directory Listing
Modified Tue Aug 22 01:00:03 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Use dup_mMatrix_as_dgeMatrix

Revision 1409 - Directory Listing
Modified Tue Aug 22 00:57:22 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
update validation tests, fix -Wall warnings

Revision 1408 - Directory Listing
Modified Tue Aug 22 00:53:51 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Add tests to verify that 'solve' and '%*%' are inverses.

Revision 1407 - Directory Listing
Modified Mon Aug 21 15:24:47 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
rename class "LU" to "denseLU" and make "LU" virtual

Revision 1406 - Directory Listing
Modified Mon Aug 21 15:20:45 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
renamed, to be used for other factorizations; use stopifnot()

Revision 1405 - Directory Listing
Modified Mon Aug 21 14:43:00 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
*** empty log message ***

Revision 1404 - Directory Listing
Modified Mon Aug 21 14:38:50 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Fix memory leak caught by valgrind.

Revision 1403 - Directory Listing
Modified Sun Aug 20 16:15:59 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg


Revision 1402 - Directory Listing
Modified Sun Aug 20 16:15:38 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Return correct # of coefs; fix cut-and-paste errors

Revision 1401 - Directory Listing
Modified Sun Aug 20 16:15:07 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Document methods for qr.* generics

Revision 1400 - Directory Listing
Modified Sun Aug 20 16:14:35 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
added

Revision 1399 - Directory Listing
Modified Sun Aug 20 16:14:07 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Fix thinko in sparseQR_resid_fitted

Revision 1398 - Directory Listing
Modified Sun Aug 20 03:26:06 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg


Revision 1397 - Directory Listing
Modified Sun Aug 20 03:24:10 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Check length of q before trying to store it

Revision 1396 - Directory Listing
Modified Sun Aug 20 03:17:19 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and qr.fitted

Revision 1395 - Directory Listing
Modified Sun Aug 20 03:15:25 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Added dup_mMatrix_as_dgeMatrix utility

Revision 1394 - Directory Listing
Modified Sat Aug 19 12:16:16 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
add comment on why Rdefines.h

Revision 1393 - Directory Listing
Modified Fri Aug 18 17:00:10 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
using R_VERSION (useful more generally) - does not help

Revision 1392 - Directory Listing
Modified Fri Aug 18 16:59:15 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
example++

Revision 1391 - Directory Listing
Modified Fri Aug 18 15:42:24 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
small update; extend LU-class example

Revision 1390 - Directory Listing
Modified Fri Aug 18 15:41:36 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
fix last fix

Revision 1389 - Directory Listing
Modified Fri Aug 18 13:53:33 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse

Revision 1388 - Directory Listing
Modified Thu Aug 17 22:37:19 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg


Revision 1387 - Directory Listing
Modified Thu Aug 17 22:31:34 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Use C code for diagU2N in CsparseMatrix classes

Revision 1386 - Directory Listing
Modified Thu Aug 17 22:30:40 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Remove code that is no longer used

Revision 1385 - Directory Listing
Modified Thu Aug 17 22:30:01 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Added solve methods for dgCMatrix and documentation

Revision 1384 - Directory Listing
Modified Thu Aug 17 13:59:21 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Update to version 2.0.1 of Tim Davis's CSparse library

Revision 1383 - Directory Listing
Modified Thu Aug 17 13:57:53 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
add sparse LU and QR decompositions

Revision 1382 - Directory Listing
Modified Wed Aug 16 16:34:27 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
new script for CSparse updating

Revision 1381 - Directory Listing
Modified Wed Aug 16 03:17:34 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Repaired Matrix_cs_as_SEXP, cosmetic changes in dgCMatrix_QR

Revision 1380 - Directory Listing
Modified Tue Aug 15 22:31:30 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working

Revision 1379 - Directory Listing
Modified Tue Aug 15 19:05:00 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
made Date: current

Revision 1378 - Directory Listing
Modified Tue Aug 15 18:25:14 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
update methods list

Revision 1377 - Directory Listing
Modified Tue Aug 15 18:24:58 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
small update

Revision 1376 - Directory Listing
Modified Tue Aug 15 18:22:54 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
use Csparse_to_logical

Revision 1375 - Directory Listing
Modified Tue Aug 15 18:21:49 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general

Revision 1374 - Directory Listing
Modified Tue Aug 15 18:17:44 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
fix replCmat, using new C Csparse_symmetric_to_general

Revision 1373 - Directory Listing
Modified Mon Aug 14 21:15:38 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg


Revision 1372 - Directory Listing
Modified Mon Aug 14 21:10:16 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Consolidate general coercion methods in Csparse.R

Revision 1371 - Directory Listing
Modified Mon Aug 14 21:08:58 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Utilities Csparse_to_logical and Csparse_symmetric_to_general

Revision 1370 - Directory Listing
Modified Mon Aug 14 19:00:02 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible

Revision 1369 - Directory Listing
Modified Mon Aug 14 18:54:04 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible

Revision 1368 - Directory Listing
Modified Sat Aug 12 17:34:00 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Generalize conversions

Revision 1367 - Directory Listing
Modified Sat Aug 12 17:33:07 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Generalize conversions

Revision 1366 - Directory Listing
Modified Sat Aug 12 17:31:39 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Generalize conversions

Revision 1365 - Directory Listing
Modified Thu Aug 10 18:52:55 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
*** empty log message ***

Revision 1364 - Directory Listing
Modified Thu Aug 10 18:50:32 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Check on all(eq) should be all(eq@x) - worked for wrong reasons prior to S4SXP

Revision 1363 - Directory Listing
Modified Thu Aug 10 18:49:06 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Adjust glmer_init for S4SXP

Revision 1362 - Directory Listing
Modified Thu Aug 10 09:44:55 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
update (do not 2.4.0-only code)

Revision 1361 - Directory Listing
Modified Thu Aug 10 09:44:17 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
S4 type check found test buglet

Revision 1360 - Directory Listing
Modified Tue Aug 8 17:29:03 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
crossprod and tcrossprod for TsparseMatrix

Revision 1359 - Directory Listing
Modified Tue Aug 8 16:27:59 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
more [tcrossprod(), Matrix, dpo*] tests

Revision 1358 - Directory Listing
Modified Tue Aug 8 16:27:28 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
fix comment

Revision 1357 - Directory Listing
Modified Tue Aug 8 16:26:38 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
.is.diagonal() and as_geClass() fixes

Revision 1356 - Directory Listing
Modified Tue Aug 8 16:24:53 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
enable more examples

Revision 1355 - Directory Listing
Modified Tue Aug 8 16:24:41 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
better (comments in) examples

Revision 1354 - Directory Listing
Modified Tue Aug 8 14:54:43 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
*** empty log message ***

Revision 1353 - Directory Listing
Modified Tue Aug 8 14:54:12 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
tcrossprod result has stype = -1 (perhaps this should change).

Revision 1352 - Directory Listing
Modified Mon Aug 7 18:31:12 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Set stype in C function Csparse_crossprod and avoid R-level conversions

Revision 1351 - Directory Listing
Modified Mon Aug 7 16:51:14 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
use speedier crossprod() for "dgC" - still slower than t(.) %*% .

Revision 1350 - Directory Listing
Modified Mon Aug 7 09:06:17 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
library(Matrix) *outside* if; more graph tests

Revision 1349 - Directory Listing
Modified Mon Aug 7 09:05:42 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
tril() etc also for T* and Rsparse

Revision 1348 - Directory Listing
Modified Mon Aug 7 09:05:00 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
sparse -> graph fix

Revision 1347 - Directory Listing
Modified Mon Aug 7 08:47:43 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
use utils:::tail.matrix directly

Revision 1346 - Directory Listing
Modified Thu Aug 3 17:17:55 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
recreate the S4 Matrix examples at data load time

Revision 1345 - Directory Listing
Modified Thu Aug 3 17:17:43 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
add another example

Revision 1344 - Directory Listing
Modified Thu Aug 3 17:15:31 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
add data(sleepstudy), needed because of LazyData: no

Revision 1343 - Directory Listing
Modified Wed Aug 2 20:43:52 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
 + factorNames2char() utility for nicer warnings

Revision 1342 - Directory Listing
Modified Tue Aug 1 20:26:45 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
hatTrace and warnings about boundary convergence

Revision 1341 - Directory Listing
Modified Tue Aug 1 17:55:57 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
using \dQuote{} and drop nolonger existing 'random.effects'

Revision 1340 - Directory Listing
Modified Tue Aug 1 15:35:23 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Document the caterpillar plot.

Revision 1339 - Directory Listing
Modified Mon Jul 31 23:08:21 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
More things to do

Revision 1338 - Directory Listing
Modified Mon Jul 31 23:06:01 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg


Revision 1337 - Directory Listing
Modified Mon Jul 31 23:05:46 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Document postVar argument to ranef method

Revision 1336 - Directory Listing
Modified Mon Jul 31 23:05:04 2006 UTC (12 years, 11 months ago) by bates
Original Path: pkg
Add hatTrace function

Revision 1335 - Directory Listing
Modified Mon Jul 31 12:11:35 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
change unused class "correlation" to "corMatrix"

Revision 1334 - Directory Listing
Modified Mon Jul 31 12:11:16 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
rm old remnant

Revision 1333 - Directory Listing
Modified Mon Jul 31 08:32:50 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
cleanup

Revision 1332 - Directory Listing
Modified Thu Jul 27 13:42:18 2006 UTC (12 years, 11 months ago) by maechler
Original Path: pkg
more dgRMatrix coercions (5 days ago)

Revision 1331 - Directory Listing
Modified Sat Jul 22 17:59:53 2006 UTC (13 years ago) by maechler
Original Path: pkg
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

Revision 1330 - Directory Listing
Modified Fri Jul 21 08:28:18 2006 UTC (13 years ago) by maechler
Original Path: pkg
pass verbose argument to (gl)mer_MCMCsamp() and use it in C code

Revision 1329 - Directory Listing
Modified Fri Jul 21 06:47:06 2006 UTC (13 years ago) by maechler
Original Path: pkg
miscellaneous mostly related to sparse indexing

Revision 1328 - Directory Listing
Modified Fri Jul 21 06:46:36 2006 UTC (13 years ago) by maechler
Original Path: pkg
export isSymmetric()

Revision 1327 - Directory Listing
Modified Fri Jul 21 06:43:31 2006 UTC (13 years ago) by maechler
Original Path: pkg
add some SparseM <-> Matrix conversions

Revision 1326 - Directory Listing
Modified Wed Jul 19 14:58:26 2006 UTC (13 years ago) by bates
Original Path: pkg
head and tail methods and reminder in TODO of classes after subscripting

Revision 1325 - Directory Listing
Modified Tue Jul 18 15:07:18 2006 UTC (13 years ago) by bates
Original Path: pkg
Wrap lines in the License section at a shorter line length.  Cite correct directory doc/UFsparse.

Revision 1324 - Directory Listing
Modified Mon Jul 17 20:15:54 2006 UTC (13 years ago) by maechler
Original Path: pkg
update date

Revision 1323 - Directory Listing
Modified Mon Jul 17 18:34:45 2006 UTC (13 years ago) by bates
Original Path: pkg
Add coersion from CHMfactor to sparseMatrix

Revision 1322 - Directory Listing
Modified Mon Jul 17 18:31:12 2006 UTC (13 years ago) by bates
Original Path: pkg
Finish the sentence

Revision 1321 - Directory Listing
Modified Mon Jul 17 18:29:48 2006 UTC (13 years ago) by bates
Original Path: pkg
Remove leading blanks in a string.  They are being tabified and result in incorrect alignment

Revision 1320 - Directory Listing
Modified Mon Jul 17 17:14:33 2006 UTC (13 years ago) by bates
Original Path: pkg
Added a "To Do" about always printing the log-likelihood and the restricted-log-likelihood for an lmer object.

Revision 1319 - Directory Listing
Modified Mon Jul 17 13:08:04 2006 UTC (13 years ago) by maechler
Original Path: pkg
non0ind() extended for symmetric sparse matrices -> correct printing

Revision 1318 - Directory Listing
Modified Mon Jul 17 13:06:55 2006 UTC (13 years ago) by maechler
Original Path: pkg
dsTMatrix_as_dgTMatrix(): do not copy the diag TWICE

Revision 1317 - Directory Listing
Modified Tue Jul 11 22:02:10 2006 UTC (13 years ago) by bates
Original Path: pkg
Fix the problem of applying INTEGER to the x slot of the value.

Revision 1316 - Directory Listing
Modified Tue Jul 11 22:00:41 2006 UTC (13 years ago) by bates
Original Path: pkg
*** empty log message ***

Revision 1315 - Directory Listing
Modified Mon Jul 10 16:08:05 2006 UTC (13 years ago) by maechler
Original Path: pkg
miscellaneous small things, including extended tests; see also ChangeLog

Revision 1314 - Directory Listing
Modified Mon Jul 10 15:23:48 2006 UTC (13 years ago) by maechler
Original Path: pkg
add lgCMatrix_diag()

Revision 1313 - Directory Listing
Modified Thu Jul 6 17:24:01 2006 UTC (13 years ago) by bates
Original Path: pkg
Updating documentation

Revision 1312 - Directory Listing
Modified Thu Jul 6 15:29:56 2006 UTC (13 years ago) by bates
Original Path: pkg


Revision 1311 - Directory Listing
Modified Thu Jul 6 15:28:42 2006 UTC (13 years ago) by bates
Original Path: pkg


Revision 1310 - Directory Listing
Modified Thu Jul 6 15:27:14 2006 UTC (13 years ago) by bates
Original Path: pkg
Remove definitions of unused identifiers

Revision 1309 - Directory Listing
Modified Thu Jul 6 15:25:55 2006 UTC (13 years ago) by bates
Original Path: pkg
mcmcsamp for glmer objects

Revision 1308 - Directory Listing
Modified Thu Jul 6 15:25:21 2006 UTC (13 years ago) by bates
Original Path: pkg
mcmcsamp for glmer objects

Revision 1307 - Directory Listing
Modified Thu Jul 6 15:16:45 2006 UTC (13 years ago) by bates
Original Path: pkg
Correction in pedigree_inbreeding (which is not currently being used or fully tested)

Revision 1306 - Directory Listing
Modified Thu Jul 6 15:14:12 2006 UTC (13 years ago) by bates
Original Path: pkg
Establish new class glmer; modify validity check on pedigree to account for nonparallel patterns of missingness in parents

Revision 1305 - Directory Listing
Modified Sat Jul 1 16:18:39 2006 UTC (13 years ago) by maechler
Original Path: pkg
coercion pMatrix -> Tsparse

Revision 1304 - Directory Listing
Modified Mon Jun 26 14:34:21 2006 UTC (13 years ago) by bates
Original Path: pkg
Preparing for new release in early July

Revision 1303 - Directory Listing
Modified Mon Jun 26 14:33:16 2006 UTC (13 years ago) by bates
Original Path: pkg
Correction in deviance method for mer objects; some cleanup

Revision 1302 - Directory Listing
Modified Mon Jun 19 15:36:44 2006 UTC (13 years, 1 month ago) by maechler
Original Path: pkg
fix segfault from wrong formula

Revision 1301 - Directory Listing
Modified Mon Jun 12 10:52:45 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg
Corrected naming of columns of an mcmcsamp object

Revision 1300 - Directory Listing
Modified Mon Jun 12 10:52:01 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg


Revision 1299 - Directory Listing
Modified Mon Jun 12 08:06:21 2006 UTC (13 years, 1 month ago) by maechler
Original Path: pkg
mcmcsamp()[,"deviance"] was wrong column

Revision 1298 - Directory Listing
Modified Sat Jun 10 19:56:18 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg


Revision 1297 - Directory Listing
Modified Sat Jun 10 19:54:41 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg
added simulestimate for lmer but hidden in NAMESPACE

Revision 1296 - Directory Listing
Modified Sat Jun 10 18:06:33 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg
Re-aligned deviance column in mcmcsamp output (and no longer use index of -1); added calculations of mer_hat_trace

Revision 1295 - Directory Listing
Modified Fri Jun 9 21:47:22 2006 UTC (13 years, 1 month ago) by maechler
Original Path: pkg
coercion to and multiplication of diagonal and sparse matrices

Revision 1294 - Directory Listing
Modified Thu Jun 8 16:06:02 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg
Many changes in mcmcsample and other places

Revision 1293 - Directory Listing
Modified Thu Jun 8 16:05:41 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg
No longer create a generic for qqmath; add deviance to mcmcsamp

Revision 1292 - Directory Listing
Modified Thu Jun 8 16:04:50 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg
No longer create a generic for qqmath

Revision 1291 - Directory Listing
Modified Thu Jun 8 16:04:09 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg
Change the Depends:

Revision 1290 - Directory Listing
Modified Thu Jun 8 09:30:21 2006 UTC (13 years, 1 month ago) by maechler
Original Path: pkg
implemented all 4 of {rowSums(), ... colMeans()}

Revision 1289 - Directory Listing
Modified Tue Jun 6 14:48:37 2006 UTC (13 years, 1 month ago) by maechler
Original Path: pkg
R >= 2.4 needs more hacking for base::as.matrix assignment

Revision 1288 - Directory Listing
Modified Thu Jun 1 20:41:20 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg
add reference line and grid to qqmath method for ranef.lmer

Revision 1287 - Directory Listing
Modified Tue May 30 23:23:24 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg


Revision 1286 - Directory Listing
Modified Tue May 30 16:00:35 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg
Functions to allow nested grouping factors to be specified as (1|foo/bar)

Revision 1285 - Directory Listing
Modified Sat May 27 20:12:08 2006 UTC (13 years, 1 month ago) by maechler
Original Path: pkg
a few small changes, comments - on the way to get to a better "Compare" (group method) approach

Revision 1284 - Directory Listing
Modified Sat May 27 20:01:11 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg
More careful checks in subbars and friends, code for calculating inbreeding coefficients directly from the pedigree

Revision 1283 - Directory Listing
Modified Sat May 27 19:51:01 2006 UTC (13 years, 1 month ago) by bates
Original Path: pkg
Add isNested and for an identity permutation for nested grouping factors

Revision 1282 - Directory Listing
Modified Wed May 24 17:00:12 2006 UTC (13 years, 1 month ago) by maechler
Original Path: pkg
eliminate a few old "FIXME"s (and add a new one :-)

Revision 1281 - Directory Listing
Modified Wed May 24 14:44:59 2006 UTC (13 years, 1 month ago) by maechler
Original Path: pkg
start massive use of \linkS4class{.}

Revision 1280 - Directory Listing
Modified Tue May 23 08:01:44 2006 UTC (13 years, 2 months ago) by maechler
Original Path: pkg
useDynlib(*, .registration=TRUE)

Revision 1279 - Directory Listing
Modified Tue May 23 08:01:11 2006 UTC (13 years, 2 months ago) by maechler
Original Path: pkg
make compilable

Revision 1278 - Directory Listing
Modified Mon May 22 22:30:11 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Begin isNested

Revision 1277 - Directory Listing
Modified Mon May 22 19:16:12 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Add an implementation of mer_denom_df

Revision 1276 - Directory Listing
Modified Mon May 22 19:14:39 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Copy colcount in CHOLMOD supernodal factorization

Revision 1275 - Directory Listing
Modified Mon May 22 18:58:08 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Compile the check module for CHOLMOD

Revision 1274 - Directory Listing
Modified Mon May 22 18:57:35 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Add a generic for qqmath (maybe not a good idea)

Revision 1273 - Directory Listing
Modified Mon May 22 18:56:23 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Copy colcount in CHOLMOD supernodal factorization

Revision 1272 - Directory Listing
Modified Sat May 20 11:34:18 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Initial denom_df attempt

Revision 1271 - Directory Listing
Modified Thu May 18 06:47:09 2006 UTC (13 years, 2 months ago) by maechler
Original Path: pkg
some  "sparse <-> graph"  updates

Revision 1270 - Directory Listing
Modified Thu May 18 06:44:43 2006 UTC (13 years, 2 months ago) by maechler
Original Path: pkg
cosmetic, comments

Revision 1269 - Directory Listing
Modified Thu May 18 06:43:29 2006 UTC (13 years, 2 months ago) by maechler
Original Path: pkg
a few more tests

Revision 1268 - Directory Listing
Modified Wed May 17 17:42:09 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor

Revision 1267 - Directory Listing
Modified Tue May 16 19:12:13 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
single argument [t]crossprod now returns a symmetric matrix

Revision 1266 - Directory Listing
Modified Tue May 16 19:11:00 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Added check on sire and dam indices to pedigree function and class validation function

Revision 1265 - Directory Listing
Modified Mon May 15 22:36:59 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band

Revision 1264 - Directory Listing
Modified Mon May 15 21:05:20 2006 UTC (13 years, 2 months ago) by maechler
Original Path: pkg
Tsparse indexing fix

Revision 1263 - Directory Listing
Modified Sun Apr 30 15:41:02 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Add chol method for pedigree objects

Revision 1262 - Directory Listing
Modified Sun Apr 30 15:40:39 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Add special solve method for unit upper triangular matrices

Revision 1261 - Directory Listing
Modified Sun Apr 30 15:39:44 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Add chol method for pedigree objects

Revision 1260 - Directory Listing
Modified Tue Apr 25 18:43:13 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Extend example and add references for pedigree-class

Revision 1259 - Directory Listing
Modified Tue Apr 25 18:42:22 2006 UTC (13 years, 2 months ago) by bates
Original Path: pkg
Unit diagonal property in transpose of dtCMatrix

Revision 1258 - Directory Listing
Modified Fri Apr 21 15:44:39 2006 UTC (13 years, 3 months ago) by maechler
Original Path: pkg
make pedigree class more memory-efficient; add pedigree()

Revision 1257 - Directory Listing
Modified Wed Apr 19 14:22:07 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
document qqmath method for ranef.lmer objects

Revision 1256 - Directory Listing
Modified Wed Apr 19 14:19:29 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
nz component of cs structure should be -1 for a compressed column-oriented matrix

Revision 1255 - Directory Listing
Modified Wed Apr 19 14:16:59 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
Remove postVar generic and methods

Revision 1254 - Directory Listing
Modified Wed Apr 19 09:17:50 2006 UTC (13 years, 3 months ago) by maechler
Original Path: pkg
+ solve methods

Revision 1253 - Directory Listing
Modified Wed Apr 19 09:17:14 2006 UTC (13 years, 3 months ago) by maechler
Original Path: pkg
tT -> tC; and diagU2N() for solve(<dtC>)

Revision 1252 - Directory Listing
Modified Sat Apr 15 13:47:09 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
Remove redundant #include "cs.h" directives.

Revision 1251 - Directory Listing
Modified Sat Apr 15 13:08:26 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
Add CSparse-based solve methods for dtCMatrix class

Revision 1250 - Directory Listing
Modified Sat Apr 15 13:01:24 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
Add CSparse library and utilities

Revision 1249 - Directory Listing
Modified Sat Apr 15 12:50:20 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
modified indentation

Revision 1248 - Directory Listing
Modified Thu Apr 13 22:05:22 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
C code for inverse of sparse, unit, lower triangular matrices (pattern only at present)

Revision 1247 - Directory Listing
Modified Thu Apr 13 11:12:51 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
pedigree class added

Revision 1246 - Directory Listing
Modified Wed Apr 12 22:11:14 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
Initial version of methods for the pedigree class.  The most important
method is the coercion to the dtCMatrix class.

Revision 1245 - Directory Listing
Modified Wed Apr 12 20:31:18 2006 UTC (13 years, 3 months ago) by maechler
Original Path: pkg
fix for <sparse> %*% <integer_matrix>

Revision 1244 - Directory Listing
Modified Wed Apr 12 12:28:04 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
Changing address

Revision 1243 - Directory Listing
Modified Sun Apr 9 00:02:26 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
Added qqmath method for ranef.lmer and postVar for ranef methods

Revision 1242 - Directory Listing
Modified Mon Apr 3 20:52:02 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
Added a qqmath method for the ranef.lmer class.

Revision 1241 - Directory Listing
Modified Mon Apr 3 20:51:37 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
Added a qqmath method for the ranef.lmer class.

Revision 1240 - Directory Listing
Modified Sun Apr 2 23:45:47 2006 UTC (13 years, 3 months ago) by bates
Original Path: pkg
Add warning about ignored arguments to coef method for lmer

Revision 1239 - Directory Listing
Modified Fri Mar 31 09:37:49 2006 UTC (13 years, 3 months ago) by maechler
Original Path: pkg
fix some \link[*-class]{*}

Revision 1238 - Directory Listing
Modified Thu Mar 30 19:56:09 2006 UTC (13 years, 3 months ago) by maechler
Original Path: pkg
coercions from dgC to triangular (dtC) and symmetric (dsC), etc

Revision 1237 - Directory Listing
Modified Thu Mar 30 15:23:47 2006 UTC (13 years, 3 months ago) by maechler
Original Path: pkg
new interesting test dataset

Revision 1236 - Directory Listing
Modified Thu Mar 23 15:16:17 2006 UTC (13 years, 4 months ago) by bates
Original Path: pkg
Propagate DimNames in dsyMatrix_as_dspMatrix

Revision 1235 - Directory Listing
Modified Tue Mar 21 17:15:53 2006 UTC (13 years, 4 months ago) by maechler
Original Path: pkg
update ("coef.lmer" class etc)

Revision 1234 - Directory Listing
Modified Tue Mar 21 12:33:28 2006 UTC (13 years, 4 months ago) by bates
Original Path: pkg
Change name of lmer.ranef class to ranef.lmer, add coef.lmer and update plot methods for these classes

Revision 1233 - Directory Listing
Modified Tue Mar 21 11:23:49 2006 UTC (13 years, 4 months ago) by bates
Original Path: pkg
Updated the ToDo list to mention pedigree, lmer and glmer classes.

Revision 1232 - Directory Listing
Modified Tue Mar 21 11:07:55 2006 UTC (13 years, 4 months ago) by bates
Original Path: pkg
modifying return value of ranef method and adding residuals method

Revision 1231 - Directory Listing
Modified Sat Mar 18 17:41:34 2006 UTC (13 years, 4 months ago) by bates
Original Path: pkg
Trivial change in documentation of a function

Revision 1230 - Directory Listing
Modified Thu Mar 16 20:03:41 2006 UTC (13 years, 4 months ago) by bates
Original Path: pkg
Fix dpotrf call for BLAS under Mac OS X

Revision 1229 - Directory Listing
Modified Wed Mar 15 17:44:21 2006 UTC (13 years, 4 months ago) by maechler
Original Path: pkg
oops; was added accidentally

Revision 1228 - Directory Listing
Modified Wed Mar 15 17:43:34 2006 UTC (13 years, 4 months ago) by maechler
Original Path: pkg
put "mm" and "y" datasets into list "KNex" and change the docu, examples, tests, and one vignette accordingly;
 ready for release of 0.995-6

Revision 1227 - Directory Listing
Modified Wed Mar 15 17:42:03 2006 UTC (13 years, 4 months ago) by maechler
Original Path: pkg
use  isPacked() [internal] instead of private class "packedMatrix"

Revision 1226 - Directory Listing
Modified Mon Mar 13 14:07:58 2006 UTC (13 years, 4 months ago) by maechler
Original Path: pkg
sparse: "[<-" and better arithmetic; other tweaks

Revision 1225 - Directory Listing
Modified Mon Mar 13 14:06:17 2006 UTC (13 years, 4 months ago) by maechler
Original Path: pkg
enable M[M < 10] for dense

Revision 1224 - Directory Listing
Modified Mon Mar 13 13:05:33 2006 UTC (13 years, 4 months ago) by bates
Original Path: pkg
Update documentation to new lmer class structure

Revision 1223 - Directory Listing
Modified Tue Mar 7 11:06:46 2006 UTC (13 years, 4 months ago) by maechler
Original Path: pkg
lmer(): dropped non-sensical 'x' and 'y' arguments

Revision 1222 - Directory Listing
Modified Tue Mar 7 11:05:08 2006 UTC (13 years, 4 months ago) by maechler
Original Path: pkg
lmer(): non-trivial summary() method -> summary.*mer classes

Revision 1220 - Directory Listing
Modified Fri Mar 3 18:22:35 2006 UTC (13 years, 4 months ago) by maechler
Original Path: pkg
add more docu on (l)mer - methods

Revision 1219 - Directory Listing
Modified Wed Feb 22 08:21:09 2006 UTC (13 years, 4 months ago) by maechler
Original Path: pkg
use R_ARCH for R-devel

Revision 1218 - Directory Listing
Modified Mon Feb 20 22:47:20 2006 UTC (13 years, 5 months ago) by bates
Original Path: pkg
Used cholmod_vertcat and cholmod_horzcat for cbind2 and rbind2 in the dsparseMatrix virtual class

Revision 1217 - Directory Listing
Modified Fri Feb 10 16:58:35 2006 UTC (13 years, 5 months ago) by maechler
Original Path: pkg
getting rid of warnings; other cosmetic

Revision 1216 - Directory Listing
Modified Wed Feb 8 17:57:31 2006 UTC (13 years, 5 months ago) by maechler
Original Path: pkg
another half-baked lmer test; cosmetics

Revision 1215 - Directory Listing
Modified Wed Feb 8 17:54:57 2006 UTC (13 years, 5 months ago) by maechler
Original Path: pkg
add simplistic "[<-" method for dgT

Revision 1214 - Directory Listing
Modified Wed Feb 8 07:43:07 2006 UTC (13 years, 5 months ago) by maechler
Original Path: pkg
require(utils) in .OnLoad()

Revision 1213 - Directory Listing
Modified Tue Feb 7 23:44:07 2006 UTC (13 years, 5 months ago) by bates
Original Path: pkg
Fix case of cbind(successes, failures) for lmer fitting a GLMM (see Changelog)

Revision 1210 - Directory Listing
Modified Thu Jan 26 08:21:46 2006 UTC (13 years, 5 months ago) by maechler
Original Path: pkg
Date++

Revision 1209 - Directory Listing
Modified Wed Jan 25 23:42:57 2006 UTC (13 years, 5 months ago) by bates
Original Path: pkg
Use coersion for transpose of dtCMatrix class

Revision 1208 - Directory Listing
Modified Wed Jan 25 15:19:29 2006 UTC (13 years, 5 months ago) by bates
Original Path: pkg
Move dtTMatrix_to_dtCMatrix to CHOLMOD code

Revision 1207 - Directory Listing
Modified Wed Jan 25 08:39:10 2006 UTC (13 years, 5 months ago) by maechler
Original Path: pkg
comment in simple.R; ready for 0.995-4 release

Revision 1206 - Directory Listing
Modified Tue Jan 24 23:02:36 2006 UTC (13 years, 5 months ago) by bates
Original Path: pkg
Initialize result of dgeMatrix_crossprod

Revision 1205 - Directory Listing
Modified Tue Jan 24 21:03:04 2006 UTC (13 years, 5 months ago) by bates
Original Path: pkg
Fix trivial memory leaks

Revision 1204 - Directory Listing
Modified Tue Jan 24 17:48:18 2006 UTC (13 years, 5 months ago) by bates
Original Path: pkg
Fix trivial memory leak

Revision 1202 - Directory Listing
Modified Mon Jan 23 16:55:43 2006 UTC (13 years, 5 months ago) by maechler
Original Path: pkg
add to tests: now also check  setAs("matrix", *)

Revision 1201 - Directory Listing
Modified Mon Jan 23 16:04:12 2006 UTC (13 years, 5 months ago) by maechler
Original Path: pkg
Class cleanup; particularly ldense* ones

Revision 1200 - Directory Listing
Modified Mon Jan 23 16:01:20 2006 UTC (13 years, 5 months ago) by maechler
Original Path: pkg
make*_(triangular|symmetric) : now for ldense* as well

Revision 1199 - Directory Listing
Modified Mon Jan 23 15:02:13 2006 UTC (13 years, 5 months ago) by maechler
Original Path: pkg
export RsparseMatrix

Revision 1198 - Directory Listing
Modified Mon Jan 23 15:01:02 2006 UTC (13 years, 5 months ago) by maechler
Original Path: pkg
no 'factors' slot in l2d_Matrix / d2l_Matrix

Revision 1197 - Directory Listing
Modified Mon Jan 23 13:43:15 2006 UTC (13 years, 5 months ago) by bates
Original Path: pkg
Version 0.995-3

Revision 1196 - Directory Listing
Modified Sun Jan 22 14:52:05 2006 UTC (13 years, 5 months ago) by bates
Original Path: pkg
fix valgrind-detected memory leak

Revision 1195 - Directory Listing
Modified Sun Jan 22 14:16:38 2006 UTC (13 years, 5 months ago) by bates
Original Path: pkg
Be more conservative by running cholmod_sort before cholmod_nnz

Revision 1194 - Directory Listing
Modified Sun Jan 22 14:16:04 2006 UTC (13 years, 5 months ago) by bates
Original Path: pkg
Fixing memory leaks

Revision 1193 - Directory Listing
Modified Sat Jan 21 21:43:13 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Free memory allocated in csc_tcrossprod

Revision 1192 - Directory Listing
Modified Fri Jan 20 20:56:46 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
Version ++

Revision 1191 - Directory Listing
Modified Fri Jan 20 19:47:10 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Use cholmod_copy in csc_tcrossprod

Revision 1190 - Directory Listing
Modified Fri Jan 20 19:46:38 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Clean up documentation

Revision 1189 - Directory Listing
Modified Fri Jan 20 18:13:39 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
"dsy" no longer extends "dge"; other small fixes

Revision 1188 - Directory Listing
Modified Fri Jan 20 18:12:04 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
fix mcmcsamp(*, saveb=TRUE)

Revision 1187 - Directory Listing
Modified Thu Jan 19 22:10:55 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
fix that other old bug that crept into 2nd last fix

Revision 1186 - Directory Listing
Modified Thu Jan 19 22:06:38 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
+ "{"

Revision 1185 - Directory Listing
Modified Thu Jan 19 22:02:53 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
restitute cholmod_common declaration to setting 0.99-6

Revision 1183 - Directory Listing
Modified Thu Jan 19 10:35:44 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
Date++

Revision 1182 - Directory Listing
Modified Thu Jan 19 10:35:09 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
s/example/examples/

Revision 1181 - Directory Listing
Modified Thu Jan 19 08:35:48 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
+ test for 0.995-1 log(.) failure

Revision 1180 - Directory Listing
Modified Thu Jan 19 00:43:37 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Over to Martin for release 0.995-2

Revision 1178 - Directory Listing
Modified Wed Jan 18 15:38:12 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Modifications to lmer.R - still not working

Revision 1177 - Directory Listing
Modified Wed Jan 18 07:35:10 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
ALL_CFLAGS += -O2

Revision 1176 - Directory Listing
Modified Wed Jan 18 07:31:41 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
correct LAPACK_LIBS (didn't change all in r2189)

Revision 1175 - Directory Listing
Modified Tue Jan 17 23:41:36 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Munging the data frame

Revision 1174 - Directory Listing
Modified Mon Jan 16 20:03:48 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings

Revision 1173 - Directory Listing
Modified Mon Jan 16 20:02:16 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
remove @rcond everywhere, and @factors for triangular ones

Revision 1171 - Directory Listing
Modified Mon Jan 16 16:59:46 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Extract the slot contents from S4 objects, not the component

Revision 1170 - Directory Listing
Modified Mon Jan 16 16:38:00 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Throw an error for mcmcsamp on a GLMM, at least until it is implemented

Revision 1169 - Directory Listing
Modified Mon Jan 16 14:41:55 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Really only need R-2.2.0 (for nlminb)

Revision 1168 - Directory Listing
Modified Mon Jan 16 14:40:39 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Modifications to propagate column names from an mer object to a VarCorr summary

Revision 1167 - Directory Listing
Modified Sun Jan 15 21:13:54 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Removing rcond slot from Matrix objects

Revision 1166 - Directory Listing
Modified Sun Jan 15 19:18:20 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
modifications to lmer and related classes

Revision 1165 - Directory Listing
Modified Sat Jan 14 23:41:55 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
new coercion to dtr* and dsy* using isSymmetric() and isTriangular(); fix validity checking; some class descriptions

Revision 1164 - Directory Listing
Modified Sat Jan 14 23:40:42 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
new dMatrix_validate and dense_nonpacked_validate

Revision 1163 - Directory Listing
Modified Sat Jan 14 23:13:20 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
export comp*- and general- Matrix classes

Revision 1162 - Directory Listing
Modified Fri Jan 13 23:47:38 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs

Revision 1161 - Directory Listing
Modified Fri Jan 13 23:46:29 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Preparation for new version

Revision 1160 - Directory Listing
Modified Fri Jan 13 23:45:45 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Updating the list of slots on factorable and non-factorable classes

Revision 1159 - Directory Listing
Modified Fri Jan 13 23:44:16 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Updating the list of slots now that the factor slot is moved to compMatrix

Revision 1158 - Directory Listing
Modified Fri Jan 13 13:13:09 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
Linking change for R-devel (windows), thanks to BDR

Revision 1157 - Directory Listing
Modified Thu Jan 12 23:41:20 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Don't use .registration in useDynLib until 2.3.0 has been released

Revision 1156 - Directory Listing
Modified Thu Jan 12 23:39:56 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Remove redundant registration of dspMatrix_trf; incorporate wts and wrkres slots in mer class

Revision 1152 - Directory Listing
Modified Thu Jan 12 07:56:14 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
0.995 ; util; R >= 2.3.0

Revision 1151 - Directory Listing
Modified Thu Jan 12 07:31:55 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
use "$(MAKE)", not "make" in Makefiles; needed eg on *BSD for "gmake"

Revision 1150 - Directory Listing
Modified Thu Jan 12 03:41:25 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Switch to supernodal Cholesky representation of mer objects

Revision 1149 - Directory Listing
Modified Thu Jan 12 03:40:07 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Updating documentation for new version of mer objects

Revision 1148 - Directory Listing
Modified Thu Jan 12 03:37:40 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Incorporation of correlation class

Revision 1147 - Directory Listing
Modified Thu Jan 12 03:36:53 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Removal of dgBCMatrix class and coercion function

Revision 1146 - Directory Listing
Modified Thu Jan 12 03:35:32 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Updating documentation for new version of mer objects

Revision 1145 - Directory Listing
Modified Thu Jan 12 03:26:06 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Remove dgBCMatrix.[ch] and dependencies

Revision 1144 - Directory Listing
Modified Thu Jan 12 03:20:47 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Remove documentation for outmoded classes

Revision 1143 - Directory Listing
Modified Thu Jan 12 03:17:24 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Switch to supernodal Cholesky representation of mer objects

Revision 1142 - Directory Listing
Modified Thu Jan 12 03:10:29 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Remove dgBCMatrix.[ch] and dependencies

Revision 1141 - Directory Listing
Modified Thu Jan 12 03:02:46 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Change malloc to Calloc in chm_common.c and correspondingly free to Free there and elsewhere

Revision 1127 - Directory Listing
Modified Tue Jan 10 18:11:23 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
add ", drop = FALSE" in lmer.coef constructions; plus a few comments

Revision 1123 - Directory Listing
Modified Tue Jan 10 17:04:29 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Release 0.99-6

Revision 1119 - Directory Listing
Modified Sat Jan 7 19:52:37 2006 UTC (13 years, 6 months ago) by bates
Original Path: pkg
Fix due to Peter Dalgaard for segfault with multiple non-nested grouping factors; Version 0.99-5

Revision 1109 - Directory Listing
Modified Tue Jan 3 16:42:31 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
"diagonalMatrix" class and subclasses with a few methods; very basic "ltTMatrix" methods

Revision 1108 - Directory Listing
Modified Mon Jan 2 23:02:07 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
isSymmetric() generic must match isSymmetric in R-devel

Revision 1107 - Directory Listing
Modified Mon Jan 2 22:59:40 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
work with more stringent all.equal()

Revision 1106 - Directory Listing
Modified Mon Jan 2 13:58:00 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
depend on "utils"; new version for ready for CRAN

Revision 1105 - Directory Listing
Modified Mon Jan 2 13:57:22 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
add check for dgeMatrix-methods of tcrossprod()

Revision 1104 - Directory Listing
Modified Mon Jan 2 13:56:55 2006 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
drop extraneous code

Revision 1101 - Directory Listing
Modified Thu Dec 29 20:05:37 2005 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
dgeMatrix_matrix_crossprod(*, trans)

Revision 1098 - Directory Listing
Modified Thu Dec 29 11:38:59 2005 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
some 2-argument-tcrossprod methods (and test svn)

Revision 1097 - Directory Listing
Modified Thu Dec 29 10:34:00 2005 UTC (13 years, 6 months ago) by maechler
Original Path: pkg
update (and test svn R-packages)

Revision 1091 - Directory Listing
Modified Mon Dec 12 13:59:58 2005 UTC (13 years, 7 months ago) by maechler
Original Path: pkg
update

Revision 1090 - Directory Listing
Modified Mon Dec 12 13:58:10 2005 UTC (13 years, 7 months ago) by maechler
Original Path: pkg
Brian's version of 2-arg tcrossprod()

Revision 1087 - Directory Listing
Modified Fri Dec 9 20:55:39 2005 UTC (13 years, 7 months ago) by maechler
Original Path: pkg
make tcrossprod() use 2 arguments (x, y=NULL)

Revision 1086 - Directory Listing
Modified Fri Dec 9 16:23:13 2005 UTC (13 years, 7 months ago) by maechler
Original Path: pkg
new Version (needed for build)

Revision 1085 - Directory Listing
Modified Fri Dec 9 16:08:00 2005 UTC (13 years, 7 months ago) by maechler
Original Path: pkg
minor additions

Revision 1084 - Directory Listing
Modified Fri Dec 9 15:41:00 2005 UTC (13 years, 7 months ago) by maechler
Original Path: pkg
thinko in dimNamesCheck()

Revision 1067 - Directory Listing
Modified Mon Nov 28 16:27:29 2005 UTC (13 years, 7 months ago) by bates
Original Path: pkg
Added crossprod method for Csparse and dense

Revision 1063 - Directory Listing
Modified Sat Nov 26 16:29:39 2005 UTC (13 years, 7 months ago) by bates
Original Path: pkg
Add zapsmall method

Revision 1062 - Directory Listing
Modified Sat Nov 26 16:29:06 2005 UTC (13 years, 7 months ago) by bates
Original Path: pkg
simulate generic is now in stats package

Revision 1061 - Directory Listing
Modified Wed Nov 23 22:21:32 2005 UTC (13 years, 7 months ago) by bates
Original Path: pkg
perfunctory test for sparse matrix multiplication

Revision 1060 - Directory Listing
Modified Wed Nov 23 22:21:02 2005 UTC (13 years, 7 months ago) by bates
Original Path: pkg
simplify the call to print

Revision 1059 - Directory Listing
Modified Wed Nov 23 22:20:13 2005 UTC (13 years, 7 months ago) by bates
Original Path: pkg
Matrix multiplication and coersion at higher level

Revision 1056 - Directory Listing
Modified Tue Nov 22 16:40:49 2005 UTC (13 years, 7 months ago) by maechler
Original Path: pkg
require(methods) needed according to the docs

Revision 1053 - Directory Listing
Modified Mon Nov 14 22:21:04 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Release 0.99-2

Revision 1052 - Directory Listing
Modified Mon Nov 14 17:11:13 2005 UTC (13 years, 8 months ago) by maechler
Original Path: pkg
SystemRequirements: GNU make

Revision 1048 - Directory Listing
Modified Sat Nov 12 16:44:04 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Test for both BLAS_LIBS and LAPACK_LIBS

Revision 1047 - Directory Listing
Modified Sat Nov 12 12:35:55 2005 UTC (13 years, 8 months ago) by maechler
Original Path: pkg
revert to original (-r1820)

Revision 1046 - Directory Listing
Modified Sat Nov 12 12:07:53 2005 UTC (13 years, 8 months ago) by maechler
Original Path: pkg
lsame.f needed for z*.f - only if not BLAS_LIBS

Revision 1041 - Directory Listing
Modified Fri Nov 11 21:45:50 2005 UTC (13 years, 8 months ago) by maechler
Original Path: pkg
use $(.)

Revision 1039 - Directory Listing
Modified Fri Nov 11 21:22:49 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Release 0.99-2

Revision 1038 - Directory Listing
Modified Fri Nov 11 21:22:08 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Adding PACKAGE = to .Call

Revision 1037 - Directory Listing
Modified Fri Nov 11 14:57:22 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Adding PACKAGE = to .Call lines

Revision 1033 - Directory Listing
Modified Wed Nov 9 22:39:33 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
typo

Revision 1032 - Directory Listing
Modified Wed Nov 9 17:55:53 2005 UTC (13 years, 8 months ago) by maechler
Original Path: pkg
need for "extern" (by Brian)

Revision 1031 - Directory Listing
Modified Wed Nov 9 17:50:06 2005 UTC (13 years, 8 months ago) by maechler
Original Path: pkg
using malloc & free & variable "dofree"

Revision 1030 - Directory Listing
Modified Wed Nov 9 17:48:24 2005 UTC (13 years, 8 months ago) by maechler
Original Path: pkg
Windows "make" extensions (based on Brian`s)

Revision 1029 - Directory Listing
Modified Wed Nov 9 15:26:22 2005 UTC (13 years, 8 months ago) by maechler
Original Path: pkg
use free() to clean up after  as_cholmod_*() since these use malloc() - as in Brian`s patch

Revision 1027 - Directory Listing
Modified Tue Nov 8 23:13:17 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
New release

Revision 1026 - Directory Listing
Modified Tue Nov 8 23:12:38 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Moving CHOLMOD User Guide

Revision 1025 - Directory Listing
Modified Tue Nov 8 23:11:59 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Moving CHOLMOD User Guide

Revision 1024 - Directory Listing
Modified Tue Nov 8 23:09:13 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
New version of Makefile.win

Revision 1023 - Directory Listing
Modified Tue Nov 8 23:07:36 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Remove entire UFconfig directory

Revision 1022 - Directory Listing
Modified Tue Nov 8 20:49:59 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Modifying CHOLMOD Makefiles and directories

Revision 1021 - Directory Listing
Modified Tue Nov 8 19:40:59 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Removing unused directory

Revision 1020 - Directory Listing
Modified Tue Nov 8 19:40:36 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Removing unused directory

Revision 1019 - Directory Listing
Modified Tue Nov 8 19:28:07 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg


Revision 1018 - Directory Listing
Modified Tue Nov 8 19:27:47 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg


Revision 1017 - Directory Listing
Modified Tue Nov 8 19:17:19 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg


Revision 1016 - Directory Listing
Modified Tue Nov 8 19:13:56 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Removing the test matrix directory

Revision 1015 - Directory Listing
Modified Tue Nov 8 18:21:45 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Moving AMD docs to inst/doc

Revision 1014 - Directory Listing
Modified Tue Nov 8 18:21:28 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Moving AMD docs to inst/doc

Revision 1013 - Directory Listing
Modified Tue Nov 8 13:33:44 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Use Calloc/Free, not malloc/Free

Revision 990 - Directory Listing
Modified Tue Oct 25 22:42:32 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
Comment out test on outer because of changes in R-2.3.0

Revision 989 - Directory Listing
Modified Tue Oct 25 17:39:26 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
munging the Makefiles

Revision 988 - Directory Listing
Modified Tue Oct 25 17:39:01 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
need a drop = FALSE in a subscripting operation

Revision 987 - Directory Listing
Modified Tue Oct 25 17:38:46 2005 UTC (13 years, 8 months ago) by bates
Original Path: pkg
need a drop = FALSE in a subscripting operation

Revision 986 - Directory Listing
Modified Fri Oct 21 19:36:30 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Remove references to mer2 and mltloc.rda which are now in a branch

Revision 984 - Directory Listing
Modified Tue Oct 11 18:08:46 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Tidying up

Revision 983 - Directory Listing
Modified Tue Oct 11 15:19:20 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Remove references to Pattern.[ch]

Revision 982 - Directory Listing
Modified Tue Oct 11 15:18:23 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Remove references to Pattern.[ch]

Revision 981 - Directory Listing
Modified Tue Oct 11 14:12:19 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Evaluate model frame before glm model of fixed effects

Revision 980 - Directory Listing
Modified Tue Oct 11 14:11:44 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Remove Pattern sources that are no longer needed

Revision 979 - Directory Listing
Modified Tue Oct 11 00:02:45 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Added a FIXME - will fix later

Revision 978 - Directory Listing
Modified Mon Oct 10 13:54:09 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
More mer2 modifications

Revision 977 - Directory Listing
Modified Fri Oct 7 22:14:47 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
mer2_initial

Revision 976 - Directory Listing
Modified Fri Oct 7 20:18:29 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
more examples; update

Revision 975 - Directory Listing
Modified Fri Oct 7 20:18:14 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
comment

Revision 974 - Directory Listing
Modified Fri Oct 7 20:17:46 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
symm. -> pos.def. test:not yet

Revision 973 - Directory Listing
Modified Fri Oct 7 20:15:08 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
isSymmetric() & simulate() updates; sparse subsetting

Revision 972 - Directory Listing
Modified Fri Oct 7 20:13:24 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
comments and more (hidden) as.Matrix utilities

Revision 971 - Directory Listing
Modified Fri Oct 7 15:40:21 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
add BLAS zherk.f because it's not (yet) in R

Revision 970 - Directory Listing
Modified Fri Oct 7 14:20:23 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Added a factorization in mer2_create so the permutation could be applied to Z'X and Z'y

Revision 969 - Directory Listing
Modified Thu Oct 6 23:34:20 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Permutation of Z'X and Z'y in mer2_factor

Revision 968 - Directory Listing
Modified Thu Oct 6 23:33:25 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
nrow, not ncol

Revision 967 - Directory Listing
Modified Thu Oct 6 03:07:23 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
More updates on lmer - still not quite correct

Revision 966 - Directory Listing
Modified Thu Oct 6 03:06:40 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Routines missing from the lapack module sources

Revision 965 - Directory Listing
Modified Wed Oct 5 16:57:55 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
(comments)

Revision 964 - Directory Listing
Modified Mon Oct 3 20:35:52 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
new and better error mesage when info

Revision 963 - Directory Listing
Modified Mon Oct 3 01:44:56 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Modifications to mer2

Revision 962 - Directory Listing
Modified Mon Oct 3 01:44:14 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Multilocation data from Mark Lyman

Revision 961 - Directory Listing
Modified Sat Oct 1 20:11:51 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
explain difference between logical(crossprod()) and crossprod(logical())

Revision 960 - Directory Listing
Modified Sat Oct 1 20:10:45 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
cosmetic

Revision 959 - Directory Listing
Modified Sat Oct 1 20:10:20 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
dtC -> dgC coercion

Revision 958 - Directory Listing
Modified Sat Oct 1 20:08:51 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
add "self-documenting" argument names

Revision 957 - Directory Listing
Modified Sat Oct 1 20:08:04 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
check return value from cholmod_aat()   {fix seg.fault}

Revision 956 - Directory Listing
Modified Fri Sep 30 17:28:00 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ...

Revision 955 - Directory Listing
Modified Thu Sep 29 19:32:14 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
duh: LIB was not a name

Revision 954 - Directory Listing
Modified Wed Sep 28 19:34:31 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
more "Compare" and some "!" methods; expm() for sparse; updated tests

Revision 953 - Directory Listing
Modified Wed Sep 28 19:31:36 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
move "factors" slot to "Matrix"

Revision 952 - Directory Listing
Modified Wed Sep 28 19:19:19 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
packed_to_full_(double|int) and full_to_packed_*

Revision 951 - Directory Listing
Modified Wed Sep 28 12:42:51 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
use uplo_P() and diag_P() macros instead of *_value() functions

Revision 950 - Directory Listing
Modified Wed Sep 28 12:42:11 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
+ include

Revision 949 - Directory Listing
Modified Wed Sep 28 09:17:08 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
cleanup

Revision 948 - Directory Listing
Modified Wed Sep 28 08:57:56 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
less test *files*

Revision 947 - Directory Listing
Modified Wed Sep 28 08:57:37 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
t(t(m)) == m and more

Revision 946 - Directory Listing
Modified Wed Sep 28 08:56:42 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
some "Summary" methods; some "Compare" group methods; logical dense matrices

Revision 945 - Directory Listing
Modified Wed Sep 28 08:54:28 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
+ logical dense matrices; more coercions

Revision 944 - Directory Listing
Modified Wed Sep 28 08:54:00 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
fix longstanding typo; new dsT*_as_dgT*

Revision 943 - Directory Listing
Modified Wed Sep 28 08:52:22 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
+ uplo_value(), diag_value()

Revision 942 - Directory Listing
Modified Wed Sep 28 08:43:56 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
add Qidentical()

Revision 941 - Directory Listing
Modified Tue Sep 27 13:28:15 2005 UTC (13 years, 9 months ago) by maechler
Original Path: pkg
new

Revision 940 - Directory Listing
Modified Tue Sep 27 00:50:35 2005 UTC (13 years, 9 months ago) by bates
Original Path: pkg
Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

Revision 939 - Directory Listing
Modified Tue Sep 20 17:23:24 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
More careful checking for linear mixed model

Revision 938 - Directory Listing
Modified Tue Sep 20 10:16:53 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
less precision in test; slightly more output

Revision 937 - Directory Listing
Modified Tue Sep 20 10:16:13 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
export more non-Primitive group generics

Revision 936 - Directory Listing
Modified Tue Sep 20 10:15:26 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
move setGeneric to AllGeneric

Revision 935 - Directory Listing
Modified Tue Sep 20 10:14:57 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
update TODOs

Revision 934 - Directory Listing
Modified Tue Sep 20 07:38:22 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
+ stricter 'dense' tests

Revision 933 - Directory Listing
Modified Tue Sep 20 07:15:58 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
+ stricter 'lgC' tests

Revision 932 - Directory Listing
Modified Mon Sep 19 23:04:52 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Updated DEPS.mkf and some include files

Revision 931 - Directory Listing
Modified Mon Sep 19 23:04:14 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Modified tests but still get a mysterious result

Revision 930 - Directory Listing
Modified Mon Sep 19 21:29:37 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
corrected error message

Revision 929 - Directory Listing
Modified Mon Sep 19 21:29:08 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Added release information

Revision 928 - Directory Listing
Modified Mon Sep 19 21:10:59 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
crossprod and tcrossprod for Tsparse

Revision 927 - Directory Listing
Modified Mon Sep 19 21:09:49 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Fixed a thinko picked up by the compiler

Revision 926 - Directory Listing
Modified Mon Sep 19 21:08:53 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Keep -Wall quiet

Revision 925 - Directory Listing
Modified Mon Sep 19 19:01:31 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more  "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

Revision 924 - Directory Listing
Modified Mon Sep 19 08:40:29 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
gTM* -> TsparseM*

Revision 923 - Directory Listing
Modified Sun Sep 18 23:41:45 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
More progress on incorporating CHOLMOD - still not passing CMD check

Revision 922 - Directory Listing
Modified Sun Sep 18 16:33:54 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Added CHOLMOD-based C functions.  Still need methods defined in R and some error checking

Revision 921 - Directory Listing
Modified Sat Sep 17 14:27:41 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Sparse Matrix methods using CHOLMOD inside ifdef blocks

Revision 920 - Directory Listing
Modified Fri Sep 16 19:36:51 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Some CHOLMOD utilities

Revision 919 - Directory Listing
Modified Fri Sep 16 17:27:06 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
new compressed_non_0_ij()

Revision 918 - Directory Listing
Modified Thu Sep 15 18:08:59 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
More for the TODO list

Revision 917 - Directory Listing
Modified Thu Sep 15 18:03:55 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Document changes

Revision 916 - Directory Listing
Modified Thu Sep 15 17:52:59 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Actually needed the Check module

Revision 915 - Directory Listing
Modified Thu Sep 15 17:45:23 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Removing unneeded directories

Revision 914 - Directory Listing
Modified Thu Sep 15 17:41:38 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Removing unneeded directories

Revision 913 - Directory Listing
Modified Thu Sep 15 17:38:18 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
No need for xerbla in R package

Revision 912 - Directory Listing
Modified Thu Sep 15 14:53:55 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Adding CHOLMOD and related source packages

Revision 911 - Directory Listing
Modified Fri Sep 9 08:13:06 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
date

Revision 910 - Directory Listing
Modified Fri Sep 9 08:12:58 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
comments & update for Diagonal

Revision 909 - Directory Listing
Modified Fri Sep 9 08:12:31 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
if(require(graph))  around everything

Revision 908 - Directory Listing
Modified Thu Sep 8 15:30:08 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
cbind() / cbind2() methods for R >= 2.2.0

Revision 907 - Directory Listing
Modified Thu Sep 8 15:28:48 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
move testing "tools" functions to ./inst/test-tools.R

Revision 906 - Directory Listing
Modified Thu Sep 8 15:26:45 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
new file testing cbind() - cbind2() dispatch

Revision 905 - Directory Listing
Modified Thu Sep 8 13:23:25 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
centralize the testing tools

Revision 904 - Directory Listing
Modified Wed Sep 7 20:43:59 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Fix readHB according to bug report from Roger Koenker

Revision 903 - Directory Listing
Modified Wed Sep 7 20:43:18 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Remove unnecessary declaration

Revision 902 - Directory Listing
Modified Tue Sep 6 14:07:10 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg


Revision 901 - Directory Listing
Modified Tue Sep 6 01:26:11 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Add "start" argument to lmer

Revision 900 - Directory Listing
Modified Sat Sep 3 22:00:07 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
up "Version" (for those using svn version)

Revision 899 - Directory Listing
Modified Sat Sep 3 21:59:29 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
(finally) check validity of all Matrix subclasses

Revision 898 - Directory Listing
Modified Sat Sep 3 21:58:37 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
+ prototypes for validity; pMatrix validity

Revision 897 - Directory Listing
Modified Sat Sep 3 21:57:55 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
cosmetic: stay within integers

Revision 896 - Directory Listing
Modified Sat Sep 3 21:57:18 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
more consistency in validation checks

Revision 895 - Directory Listing
Modified Sat Sep 3 21:56:35 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
cosmetic, comment

Revision 894 - Directory Listing
Modified Sat Sep 3 21:55:38 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
comments

Revision 893 - Directory Listing
Modified Sat Sep 3 21:54:10 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
workaround Rdconv and Slot-section-parsing buglets

Revision 892 - Directory Listing
Modified Fri Sep 2 13:40:47 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
move some methods from lgT to lsparse

Revision 891 - Directory Listing
Modified Fri Sep 2 13:39:57 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
new symmetric* and triangular* classes` docu: link to them in other places

Revision 890 - Directory Listing
Modified Thu Sep 1 17:18:08 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
add triangularMatrix_validate and symmetric* to C code and make (re!)use of it - not quite everywhere?

Revision 889 - Directory Listing
Modified Thu Sep 1 14:19:01 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Typo

Revision 888 - Directory Listing
Modified Thu Sep 1 13:46:21 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
New simulate method for lmer objects

Revision 887 - Directory Listing
Modified Wed Aug 31 20:31:47 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
uplo &diag slots now go with superclass triangular* or symmetric*

Revision 886 - Directory Listing
Modified Wed Aug 31 17:49:47 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and character indices; new tests; more to do

Revision 885 - Directory Listing
Modified Tue Aug 30 20:54:55 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
fix typo in non-validity text

Revision 884 - Directory Listing
Modified Tue Aug 30 14:38:31 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Update

Revision 883 - Directory Listing
Modified Tue Aug 30 14:38:04 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Doxygen documentation for C function

Revision 882 - Directory Listing
Modified Tue Aug 30 14:37:24 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Corrected a typo

Revision 881 - Directory Listing
Modified Tue Aug 30 14:37:09 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg


Revision 880 - Directory Listing
Modified Tue Aug 30 14:36:41 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
More coercion methods

Revision 879 - Directory Listing
Modified Tue Aug 30 14:35:05 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Added simulate generic and method

Revision 878 - Directory Listing
Modified Sun Aug 28 13:57:39 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Add simulate method for lmer

Revision 877 - Directory Listing
Modified Sun Aug 28 13:57:12 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
Correct class names

Revision 876 - Directory Listing
Modified Sat Aug 27 22:50:57 2005 UTC (13 years, 10 months ago) by bates
Original Path: pkg
clean up conversion of graphNEL to sparseMatrix

Revision 875 - Directory Listing
Modified Sat Aug 27 21:29:21 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
indexing (mainly denseMatrix) - using "vector" indices

Revision 874 - Directory Listing
Modified Sat Aug 27 21:27:51 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
prepare graphNEL coercion both for directed and undir.

Revision 873 - Directory Listing
Modified Sat Aug 27 21:26:23 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
some new ones

Revision 872 - Directory Listing
Modified Sat Aug 27 21:26:10 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
new for regr.checking

Revision 871 - Directory Listing
Modified Fri Aug 26 17:26:49 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
Version 0.98-6: "[" methods for dense matrices; first "[<-"; examples

Revision 870 - Directory Listing
Modified Fri Aug 26 17:25:03 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
"Summary" method -> found R-bug

Revision 869 - Directory Listing
Modified Fri Aug 26 17:23:49 2005 UTC (13 years, 10 months ago) by maechler
Original Path: pkg
better explain diag="U" for dtpMatrix

Revision 868 - Directory Listing
Modified Fri Aug 19 17:01:11 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
printing of sparse logicals; "[" reorganization (part 1)

Revision 867 - Directory Listing
Modified Fri Aug 19 16:59:46 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
new "gTMatrix" virtual class

Revision 866 - Directory Listing
Modified Fri Aug 19 16:58:26 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
new lcrc_to_matrix code

Revision 865 - Directory Listing
Modified Fri Aug 19 16:57:49 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
setAs( to "lgTMatrix" )

Revision 864 - Directory Listing
Modified Thu Aug 18 21:36:49 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
It's 'warning', not 'warn'

Revision 863 - Directory Listing
Modified Thu Aug 18 21:31:31 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Release 0.98-5

Revision 862 - Directory Listing
Modified Thu Aug 18 21:31:07 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Coercion method for graphNEL to sparseMatrix class

Revision 861 - Directory Listing
Modified Thu Aug 18 21:29:52 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Fix column labels on mcmcsamp for glmer objects

Revision 860 - Directory Listing
Modified Wed Aug 17 05:50:50 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
Version

Revision 859 - Directory Listing
Modified Wed Aug 17 05:37:55 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
add sparse logical matrices

Revision 858 - Directory Listing
Modified Wed Aug 17 05:37:27 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
line wrap; + example

Revision 857 - Directory Listing
Modified Tue Aug 16 22:19:58 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Change method of reading Harwell-Boeing matrix format and change example

Revision 856 - Directory Listing
Modified Tue Aug 16 20:20:13 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
small fixups

Revision 855 - Directory Listing
Modified Tue Aug 16 18:57:36 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
first place to use callNextMethod()

Revision 854 - Directory Listing
Modified Tue Aug 16 18:05:01 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Release 0.98-4

Revision 853 - Directory Listing
Modified Tue Aug 16 18:03:01 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Move documentation for readHB and readMM to man/externalFormats.Rd

Revision 852 - Directory Listing
Modified Tue Aug 16 17:52:16 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Move readHB and readMM to R code and allow the use of connections

Revision 851 - Directory Listing
Modified Tue Aug 16 17:39:38 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
export  dgR*, dsR* & dtR* Matrix - and "fix" stubs

Revision 850 - Directory Listing
Modified Tue Aug 16 17:38:04 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
+ "denseMatrix"

Revision 849 - Directory Listing
Modified Tue Aug 16 17:37:09 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
mv \title

Revision 848 - Directory Listing
Modified Thu Aug 11 07:41:59 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
+"denseMatrix" class; export defined but unused classes

Revision 847 - Directory Listing
Modified Thu Aug 11 06:44:09 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Release 0.98-3

Revision 846 - Directory Listing
Modified Wed Aug 10 22:08:35 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Release 0.98-3

Revision 845 - Directory Listing
Modified Wed Aug 10 18:26:18 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
add "FIXME" example

Revision 844 - Directory Listing
Modified Wed Aug 10 18:25:32 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
kappa(Matrix()) no longer segfaults

Revision 843 - Directory Listing
Modified Wed Aug 10 18:24:18 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
comment

Revision 842 - Directory Listing
Modified Tue Aug 9 14:23:37 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Modify column names for transformed parameters in mcmcsamp

Revision 841 - Directory Listing
Modified Tue Aug 9 14:21:32 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Remove second declaration of IOHBterminate

Revision 840 - Directory Listing
Modified Mon Aug 8 16:16:17 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Avoid problems with trying to write to string constants.

Revision 839 - Directory Listing
Modified Mon Aug 8 14:59:54 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
update

Revision 838 - Directory Listing
Modified Mon Aug 8 14:59:38 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
writeHarwellBoeing and writeMatrixMarket routines

Revision 837 - Directory Listing
Modified Mon Aug 8 14:58:55 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Simplify plots of examples in mcmcsamp by making them 1000 points only

Revision 836 - Directory Listing
Modified Mon Aug 8 13:37:04 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
added {tolerance} [was not saved at last "commit"]

Revision 835 - Directory Listing
Modified Mon Aug 8 13:33:18 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Add writeHB and writeMM methods and generic

Revision 834 - Directory Listing
Modified Mon Aug 8 08:36:34 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
misc comments/formatting

Revision 833 - Directory Listing
Modified Mon Aug 8 08:35:17 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
fixing to unused Lower/Upper Triangular test functions

Revision 832 - Directory Listing
Modified Mon Aug 8 08:33:55 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
lmer()`s "model = T/F" and control arguments; add comments and "FIXME"s

Revision 831 - Directory Listing
Modified Mon Aug 8 08:24:10 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
note on setGeneric("lmer",*) - match.call() pecularity

Revision 830 - Directory Listing
Modified Mon Aug 8 08:22:44 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
add examples + FIXME note

Revision 829 - Directory Listing
Modified Mon Aug 8 08:21:47 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
re-assign as.matrix() in base (!) -- experimental

Revision 828 - Directory Listing
Modified Sun Aug 7 21:59:32 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Remove OrchardSprays examples

Revision 827 - Directory Listing
Modified Sun Aug 7 21:58:53 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
More examples

Revision 826 - Directory Listing
Modified Sun Aug 7 16:28:57 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
add examples of external formats

Revision 825 - Directory Listing
Modified Sun Aug 7 15:22:33 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Harwell-Boeing and MatrixMarket formats

Revision 824 - Directory Listing
Modified Sat Aug 6 20:01:51 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Allow mcmcsamp on transformed parameters

Revision 823 - Directory Listing
Modified Sat Jul 30 21:35:38 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
+ tcrossprod() method for simple "matrix" and "numeric"

Revision 822 - Directory Listing
Modified Sat Jul 30 21:34:15 2005 UTC (13 years, 11 months ago) by maechler
Original Path: pkg
get rid of \synopsis{} and document missing args

Revision 820 - Directory Listing
Modified Wed Jul 27 23:07:04 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Version 0.98-1

Revision 818 - Directory Listing
Modified Tue Jul 26 22:46:14 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
updates on lmer_MCMCsamp

Revision 816 - Directory Listing
Modified Tue Jul 26 12:36:10 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Working version of lmer_MCMCsamp - may have chisq in wrong place when sampling sigmasqr

Revision 815 - Directory Listing
Modified Sun Jul 24 23:53:40 2005 UTC (13 years, 11 months ago) by bates
Original Path: pkg
Added lmer_MCMCsamp to the C sources

Revision 814 - Directory Listing
Modified Thu Jul 21 23:05:52 2005 UTC (14 years ago) by bates
Original Path: pkg
Working version of the glmmMCMC producing an mcmc object

Revision 813 - Directory Listing
Modified Thu Jul 21 16:41:42 2005 UTC (14 years ago) by bates
Original Path: pkg
New sampling for glmerMCMC but intermediates are not appropriately PROTECTed

Revision 812 - Directory Listing
Modified Thu Jul 21 14:59:04 2005 UTC (14 years ago) by bates
Original Path: pkg
Added an rWishart function, which should later be moved to the stats package

Revision 811 - Directory Listing
Modified Thu Jul 14 15:37:41 2005 UTC (14 years ago) by bates
Original Path: pkg
Modifications to glmmMCMC

Revision 810 - Directory Listing
Modified Thu Jul 14 13:48:38 2005 UTC (14 years ago) by bates
Original Path: pkg
Modifications to glmmMCMC

Revision 809 - Directory Listing
Modified Tue Jul 12 23:00:50 2005 UTC (14 years ago) by bates
Original Path: pkg
Release 0.97-4 with fix suggested by DTL

Revision 808 - Directory Listing
Modified Mon Jul 11 15:05:40 2005 UTC (14 years ago) by bates
Original Path: pkg
Release 0.97-3

Revision 807 - Directory Listing
Modified Mon Jul 11 14:51:22 2005 UTC (14 years ago) by bates
Original Path: pkg
Release 0.97-3

Revision 806 - Directory Listing
Modified Fri Jul 8 15:38:43 2005 UTC (14 years ago) by bates
Original Path: pkg
Preliminary version of glmmMCMC

Revision 805 - Directory Listing
Modified Fri Jul 8 03:47:35 2005 UTC (14 years ago) by bates
Original Path: pkg
More work on glmer_ranef_update - still not complete

Revision 804 - Directory Listing
Modified Thu Jul 7 20:05:47 2005 UTC (14 years ago) by bates
Original Path: pkg
Preparing for glmmMCMC

Revision 803 - Directory Listing
Modified Thu Jul 7 19:09:49 2005 UTC (14 years ago) by murdoch
Original Path: pkg
Get include files from R_HOME/include in Windows

Revision 802 - Directory Listing
Modified Wed Jul 6 23:55:39 2005 UTC (14 years ago) by bates
Original Path: pkg
got glmer_fixed_update working

Revision 801 - Directory Listing
Modified Wed Jul 6 16:24:33 2005 UTC (14 years ago) by bates
Original Path: pkg
Updates for release 0.97-2

Revision 800 - Directory Listing
Modified Tue Jul 5 00:38:09 2005 UTC (14 years ago) by bates
Original Path: pkg
Clean up

Revision 799 - Directory Listing
Modified Tue Jul 5 00:37:34 2005 UTC (14 years ago) by bates
Original Path: pkg
Increase default maxIter and calculate nAGQ more carefully

Revision 798 - Directory Listing
Modified Mon Jul 4 15:28:48 2005 UTC (14 years ago) by bates
Original Path: pkg
Updates to man pages

Revision 797 - Directory Listing
Modified Mon Jul 4 15:28:22 2005 UTC (14 years ago) by bates
Original Path: pkg
Need to print results of tests in a conditional expression

Revision 796 - Directory Listing
Modified Mon Jul 4 14:57:28 2005 UTC (14 years ago) by bates
Original Path: pkg
Added utilities vecSum and vecIncrement

Revision 795 - Directory Listing
Modified Mon Jul 4 14:56:57 2005 UTC (14 years ago) by bates
Original Path: pkg
Added AGQ for glmer class

Revision 794 - Directory Listing
Modified Mon Jul 4 14:54:33 2005 UTC (14 years ago) by bates
Original Path: pkg
New release

Revision 793 - Directory Listing
Modified Mon Jul 4 14:54:13 2005 UTC (14 years ago) by bates
Original Path: pkg
Added tests for generalized mixed models

Revision 792 - Directory Listing
Modified Sat Jul 2 20:58:14 2005 UTC (14 years ago) by maechler
Original Path: pkg
cosmetic

Revision 791 - Directory Listing
Modified Sat Jul 2 20:57:32 2005 UTC (14 years ago) by maechler
Original Path: pkg
at least 1 entry for Doug

Revision 790 - Directory Listing
Modified Sat Jul 2 20:57:08 2005 UTC (14 years ago) by maechler
Original Path: pkg
emacs-helping comment

Revision 789 - Directory Listing
Modified Sat Jul 2 20:55:50 2005 UTC (14 years ago) by maechler
Original Path: pkg
separate docu for ddenseMatrix class

Revision 788 - Directory Listing
Modified Fri Jul 1 10:19:36 2005 UTC (14 years ago) by maechler
Original Path: pkg
add concept for GLMM

Revision 787 - Directory Listing
Modified Thu Jun 30 16:59:12 2005 UTC (14 years ago) by bates
Original Path: pkg
Still modifying glmer_devAGQ

Revision 786 - Directory Listing
Modified Tue Jun 28 13:58:41 2005 UTC (14 years ago) by bates
Original Path: pkg
Developing AGQ but still not right

Revision 785 - Directory Listing
Modified Sun Jun 26 16:22:56 2005 UTC (14 years ago) by bates
Original Path: pkg
Conditional modes now ok for MCMC - still need sampling methods

Revision 784 - Directory Listing
Modified Sun Jun 26 03:42:21 2005 UTC (14 years ago) by bates
Original Path: pkg
More work on MCMC (still incomplete)

Revision 783 - Directory Listing
Modified Sun Jun 26 03:41:37 2005 UTC (14 years ago) by bates
Original Path: pkg
Reinstate check on number of arguments

Revision 782 - Directory Listing
Modified Fri Jun 24 23:06:33 2005 UTC (14 years ago) by bates
Original Path: pkg
Adding MCMC capability (currently incomplete)

Revision 781 - Directory Listing
Modified Fri Jun 24 15:38:43 2005 UTC (14 years ago) by bates
Original Path: pkg
Further development on AGQ and MCMC for glmm models

Revision 780 - Directory Listing
Modified Sun Jun 19 14:59:30 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Release 0.96-3

Revision 779 - Directory Listing
Modified Wed Jun 15 15:52:19 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Adding AGQ (but not yet correct)

Revision 778 - Directory Listing
Modified Tue Jun 14 04:05:54 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Non-working version - needs adjustment of deviance by multiplicative factor

Revision 777 - Directory Listing
Modified Tue Jun 14 04:02:57 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
release 0.96-2

Revision 776 - Directory Listing
Modified Mon Jun 13 19:45:04 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Setting up for AGQ

Revision 775 - Directory Listing
Modified Mon Jun 13 01:22:28 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Factoring C code in preparation for AGQ

Revision 774 - Directory Listing
Modified Fri Jun 10 18:40:54 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Moving devLaplace calculations to C code

Revision 773 - Directory Listing
Modified Thu Jun 9 18:30:33 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Adding flag to skip fixed-effects terms (for use with generalized linear or nonlinear models)

Revision 772 - Directory Listing
Modified Thu Jun 9 16:57:55 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Prepare for release 0.96-1

Revision 769 - Directory Listing
Modified Wed Jun 8 23:47:45 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Moving lmer to the Matrix package

Revision 768 - Directory Listing
Modified Wed Jun 8 17:19:21 2005 UTC (14 years, 1 month ago) by maechler
Original Path: pkg
re-instantiate old examples / tests since R-devel bug seems gone now

Revision 766 - Directory Listing
Modified Tue Jun 7 23:03:34 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Isolating and cleaning up the mer, lmer, and glmer functions

Revision 765 - Directory Listing
Modified Tue Jun 7 23:03:19 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Keep -Wall quiet

Revision 764 - Directory Listing
Modified Mon Jun 6 16:03:07 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Keep -Wall quiet

Revision 763 - Directory Listing
Modified Mon Jun 6 15:53:08 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
New release

Revision 762 - Directory Listing
Modified Mon Jun 6 15:52:23 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Keep -Wall quiet

Revision 761 - Directory Listing
Modified Mon Jun 6 15:51:24 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Use mer objects; Replace REML slot by method slot

Revision 760 - Directory Listing
Modified Mon Jun 6 15:48:13 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Fix matrix multiplication methods

Revision 759 - Directory Listing
Modified Mon Jun 6 15:47:13 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Fix matrix multiplication methods

Revision 758 - Directory Listing
Modified Mon Jun 6 15:46:28 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Fix matrix multiplication methods

Revision 757 - Directory Listing
Modified Mon Jun 6 15:39:04 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Comment out problematic tests

Revision 756 - Directory Listing
Modified Mon Jun 6 15:38:50 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Comment out problematic tests

Revision 753 - Directory Listing
Modified Sun May 29 02:15:35 2005 UTC (14 years, 1 month ago) by bates
Original Path: pkg
Release 0.95-11

Revision 749 - Directory Listing
Modified Fri May 20 03:17:14 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Release 0.95-10

Revision 748 - Directory Listing
Modified Thu May 19 21:29:33 2005 UTC (14 years, 2 months ago) by deepayan
Original Path: pkg
fixed typos

Revision 747 - Directory Listing
Modified Thu May 19 17:43:42 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Incorrect version but I want to transfer it

Revision 746 - Directory Listing
Modified Wed May 18 17:03:17 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Corrected determination of slot sizes for multiple non-nested grouping factors

Revision 745 - Directory Listing
Modified Tue May 17 18:34:27 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Fold bCrosstab.[ch] into lmer.[ch]

Revision 744 - Directory Listing
Modified Tue May 17 17:46:19 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Adding logical sparse matrix methods

Revision 743 - Directory Listing
Modified Tue May 17 17:45:52 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Fold bCrosstab.[ch] into lmer.[ch]

Revision 742 - Directory Listing
Modified Tue May 17 17:45:24 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Fold bCrosstab.[ch] into lmer.[ch]

Revision 741 - Directory Listing
Modified Tue May 17 17:44:02 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
collapse some constructions in the code

Revision 740 - Directory Listing
Modified Tue May 17 17:42:35 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Last update before removing these files

Revision 739 - Directory Listing
Modified Tue May 17 17:42:04 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Adding logical sparse matrix methods

Revision 738 - Directory Listing
Modified Tue May 17 17:25:31 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Added Matrix_expand_pointers (callable from R) and moved utility for duplicating slots

Revision 737 - Directory Listing
Modified Tue May 17 17:21:38 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Adding logical sparse matrix methods

Revision 736 - Directory Listing
Modified Tue May 17 17:21:04 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Adding logical sparse matrix methods

Revision 735 - Directory Listing
Modified Tue May 17 17:20:01 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Adding logical sparse matrix methods

Revision 734 - Directory Listing
Modified Tue May 17 17:18:54 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Adding logical sparse matrix methods

Revision 733 - Directory Listing
Modified Tue May 17 17:18:30 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Adding logical sparse matrix methods

Revision 732 - Directory Listing
Modified Tue May 17 17:18:14 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Adding logical sparse matrix methods

Revision 731 - Directory Listing
Modified Tue May 17 17:17:29 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Cosmetic changes

Revision 730 - Directory Listing
Modified Tue May 17 17:16:53 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Adding logical sparse matrix methods

Revision 729 - Directory Listing
Modified Tue May 17 17:16:39 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Adding logical sparse matrix methods

Revision 728 - Directory Listing
Modified Sat May 14 00:21:17 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Preparing for release 0.95-10

Revision 726 - Directory Listing
Modified Thu May 12 14:59:04 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Release 0.95-9

Revision 725 - Directory Listing
Modified Tue May 10 14:50:39 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Release 0.95-8 with bug fix for sparse symmetric solve

Revision 723 - Directory Listing
Modified Tue May 10 01:42:05 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
More logical sparse matrix methods

Revision 722 - Directory Listing
Modified Mon May 9 14:29:12 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg


Revision 720 - Directory Listing
Modified Mon May 9 01:32:44 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Methods for logical general sparse matrices

Revision 718 - Directory Listing
Modified Mon May 9 01:24:35 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Getting ready for a release

Revision 715 - Directory Listing
Modified Fri May 6 23:52:53 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Added colSums and friends for dgeMatrix class

Revision 714 - Directory Listing
Modified Fri May 6 23:52:34 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg
Added colSums and friends for dgeMatrix class

Revision 712 - Directory Listing
Modified Fri May 6 22:20:59 2005 UTC (14 years, 2 months ago) by bates
Original Path: pkg


Revision 711 - Directory Listing
Modified Thu May 5 04:12:44 2005 UTC (14 years, 2 months ago) by deepayan
Original Path: pkg
Updates related to Laplace approximation

Revision 709 - Directory Listing
Modified Tue May 3 16:08:26 2005 UTC (14 years, 2 months ago) by deepayan
Original Path: pkg
changes related to Laplace approximation, including new function to compute parts of the deviance in C code, which doesn't currently work

Revision 705 - Directory Listing
Modified Fri Apr 29 14:42:39 2005 UTC (14 years, 2 months ago) by deepayan
Original Path: pkg
additions related to the Laplace approximation in glmm lmer models

Revision 703 - Directory Listing
Modified Thu Apr 21 22:00:04 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Replace identical(TRUE, ...) by isTRUE(...)

Revision 702 - Directory Listing
Modified Thu Apr 21 13:00:36 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Moving Doxyfile

Revision 701 - Directory Listing
Modified Wed Apr 20 13:24:21 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Finally remove Nineteen_Dubious_Revisited from svn archive

Revision 700 - Directory Listing
Modified Mon Apr 18 20:21:04 2005 UTC (14 years, 3 months ago) by maechler
Original Path: pkg
-Wall

Revision 699 - Directory Listing
Modified Mon Apr 18 20:20:46 2005 UTC (14 years, 3 months ago) by maechler
Original Path: pkg
comment out "integer" methods: those are now part of "numeric"

Revision 698 - Directory Listing
Modified Mon Apr 18 20:20:04 2005 UTC (14 years, 3 months ago) by maechler
Original Path: pkg
numeric x dgeMatrix : for solve etc; semi-activate the as.Matrix() idea

Revision 697 - Directory Listing
Modified Mon Apr 18 20:18:46 2005 UTC (14 years, 3 months ago) by maechler
Original Path: pkg
numeric x dgeMatrix : for solve etc

Revision 696 - Directory Listing
Modified Mon Apr 18 20:03:58 2005 UTC (14 years, 3 months ago) by maechler
Original Path: pkg
sparse "scalar" arithmetic

Revision 695 - Directory Listing
Modified Mon Apr 18 17:12:14 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Tests for the solve methods

Revision 694 - Directory Listing
Modified Mon Apr 18 17:11:32 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Give a warning, not an error, for detection of exact singularity in the LU decomposition

Revision 693 - Directory Listing
Modified Mon Apr 18 17:02:26 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
In R-2.1.0 matrix dispatches before integer so always set storage.mode on objects of class "matrix"

Revision 692 - Directory Listing
Modified Mon Apr 18 14:34:33 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Release 0.95-6

Revision 688 - Directory Listing
Modified Sat Apr 2 13:18:16 2005 UTC (14 years, 3 months ago) by maechler
Original Path: pkg
no need for \ in %*% in error message

Revision 687 - Directory Listing
Modified Fri Apr 1 07:36:09 2005 UTC (14 years, 3 months ago) by maechler
Original Path: pkg
"[" and show() methods for sparse matrices => RFC

Revision 686 - Directory Listing
Modified Thu Mar 31 21:19:35 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Create "fallback" methods for any kind of numeric, dense matrix

Revision 685 - Directory Listing
Modified Thu Mar 31 18:17:28 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Multiplication operations for sparseMatrix and ddenseMatrix

Revision 684 - Directory Listing
Modified Thu Mar 31 17:56:46 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Multiplication operations for sparseMatrix and ddenseMatrix

Revision 683 - Directory Listing
Modified Thu Mar 31 17:10:16 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Moving methods for operations with numeric to the Matrix class and with integer to the dMatrix class

Revision 682 - Directory Listing
Modified Thu Mar 31 08:07:02 2005 UTC (14 years, 3 months ago) by maechler
Original Path: pkg
commit the TRUE case (all.equal difference)

Revision 681 - Directory Listing
Modified Thu Mar 31 00:14:36 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Repaired a thinko in the lmer_fitted function

Revision 680 - Directory Listing
Modified Wed Mar 30 14:43:56 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Prepare for release 0.95-4

Revision 679 - Directory Listing
Modified Wed Mar 30 14:42:36 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Rename expand_column_pointers to expand_cmpPt (expand compressed pointers)

Revision 678 - Directory Listing
Modified Wed Mar 30 14:27:40 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Misread instructions - directory not used

Revision 677 - Directory Listing
Modified Mon Mar 28 14:03:32 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Added dgRMatrix methods and documentation

Revision 676 - Directory Listing
Modified Sat Mar 26 15:59:18 2005 UTC (14 years, 3 months ago) by maechler
Original Path: pkg
+ virtual "sparseMatrix" classes

Revision 675 - Directory Listing
Modified Sat Mar 26 11:16:05 2005 UTC (14 years, 3 months ago) by maechler
Original Path: pkg
export csc_tcrossprod - and add examples & test for tcrossprod()

Revision 666 - Directory Listing
Modified Thu Mar 24 13:50:16 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Add replace functions to calls to setIs for symmetric to positive definite

Revision 665 - Directory Listing
Modified Thu Mar 24 13:06:09 2005 UTC (14 years, 3 months ago) by bates
Original Path: pkg
Removing the ssclme and sscCrosstab classes

Revision 664 - Directory Listing
Modified Thu Mar 24 13:00:09 2005 UTC (14 years, 3 months ago) by maechler
Original Path: pkg
make virtual classes "VIRTUAL"

Revision 663 - Directory Listing
Modified Wed Mar 23 17:36:48 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Moving all ssclme-related R code to the lme4 package

Revision 662 - Directory Listing
Modified Wed Mar 23 17:34:59 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Moving all ssclme-related R code to the lme4 package

Revision 661 - Directory Listing
Modified Tue Mar 22 21:02:01 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
add "obvious" new matrices

Revision 660 - Directory Listing
Modified Thu Mar 17 17:53:43 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
minor changes; less precision for platform portability

Revision 659 - Directory Listing
Modified Thu Mar 17 17:53:10 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
cosmetic; examples

Revision 658 - Directory Listing
Modified Thu Mar 17 17:52:06 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
+ as.matrix() + unname() method

Revision 657 - Directory Listing
Modified Wed Mar 16 16:57:52 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
more %*% and setAs(); tests too

Revision 656 - Directory Listing
Modified Wed Mar 16 16:55:32 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
rename s/M.n/M.v/ etc

Revision 655 - Directory Listing
Modified Wed Mar 16 16:37:05 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
eliminate extraneous declaration for "-Wall"

Revision 654 - Directory Listing
Modified Wed Mar 16 16:18:33 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Generalize matrix multiplication and solve methods

Revision 653 - Directory Listing
Modified Wed Mar 16 16:17:43 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
include permutation in expand method for LU

Revision 652 - Directory Listing
Modified Wed Mar 16 01:08:36 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Updates to multiplication and other methods

Revision 651 - Directory Listing
Modified Tue Mar 15 01:54:50 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Document methods and add links

Revision 650 - Directory Listing
Modified Tue Mar 15 01:53:58 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Correct the coercion to matrix

Revision 649 - Directory Listing
Modified Tue Mar 15 00:59:38 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Validate function stubs for pBunchKaufman and pCholesky classes

Revision 648 - Directory Listing
Modified Tue Mar 15 00:58:37 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Zero the unused triangle in the Cholesky decomposition

Revision 647 - Directory Listing
Modified Tue Mar 15 00:56:35 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Document methods for dppMatrix class

Revision 646 - Directory Listing
Modified Tue Mar 15 00:52:35 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
'unpack' methods

Revision 645 - Directory Listing
Modified Tue Mar 15 00:51:42 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Updates

Revision 644 - Directory Listing
Modified Tue Mar 15 00:51:16 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Update test results

Revision 643 - Directory Listing
Modified Tue Mar 15 00:50:48 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Adding many methods for the dsyMatrix class

Revision 642 - Directory Listing
Modified Tue Mar 15 00:49:32 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
'unpack' methods

Revision 641 - Directory Listing
Modified Tue Mar 15 00:48:34 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Clean up the 't' method

Revision 640 - Directory Listing
Modified Tue Mar 15 00:44:13 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
permutation matrix class

Revision 639 - Directory Listing
Modified Tue Mar 15 00:44:02 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Coercions and methods for dppMatrix and dspMatrix classes

Revision 638 - Directory Listing
Modified Tue Mar 15 00:43:21 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
permutation matrix class

Revision 637 - Directory Listing
Modified Tue Mar 15 00:41:24 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Coercions and methods for dppMatrix and dspMatrix classes

Revision 636 - Directory Listing
Modified Tue Mar 15 00:40:58 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Coercions and methods for dppMatrix and dspMatrix classes

Revision 635 - Directory Listing
Modified Tue Mar 15 00:40:26 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Coercions and methods for dppMatrix and dspMatrix classes

Revision 634 - Directory Listing
Modified Sun Mar 13 21:01:45 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
updates

Revision 633 - Directory Listing
Modified Sun Mar 13 21:01:15 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
comments

Revision 632 - Directory Listing
Modified Sun Mar 13 21:00:53 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
mv some to new Auxiliaries file (early in alphabetic sorting!)

Revision 631 - Directory Listing
Modified Sun Mar 13 04:34:52 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Add BunchKaufman factorization

Revision 630 - Directory Listing
Modified Thu Mar 10 22:56:33 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
update -- note this now fails for R 2.0.1

Revision 629 - Directory Listing
Modified Thu Mar 10 19:00:57 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Fix dgeMatrix_dtpMatrix_mm and add test

Revision 628 - Directory Listing
Modified Thu Mar 10 17:57:47 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
more  %*% methods; some dimnames in C (untested); checks extended

Revision 627 - Directory Listing
Modified Mon Mar 7 17:36:38 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
oops! I believed the outdated docu -- it *IS* an S4 generic, really!

Revision 626 - Directory Listing
Modified Mon Mar 7 17:19:03 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
cosmetic additions

Revision 622 - Directory Listing
Modified Mon Mar 7 12:45:59 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Wrong number of args in lmer_update_mm

Revision 621 - Directory Listing
Modified Sat Mar 5 21:23:09 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
mainly changed \alias{}es for methods

Revision 620 - Directory Listing
Modified Sat Mar 5 21:22:08 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
new tests

Revision 619 - Directory Listing
Modified Sat Mar 5 21:21:31 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
comments and cosmetic, setAs(.) first

Revision 618 - Directory Listing
Modified Sat Mar 5 21:20:42 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
extended show Method, testing for "Matrix"; rather "ddenseMatrix" -> "matrix"

Revision 617 - Directory Listing
Modified Sat Mar 5 21:19:13 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
+ setAs(*, "matrix")

Revision 616 - Directory Listing
Modified Sat Mar 5 21:17:40 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
+ 2 crossprod methods

Revision 615 - Directory Listing
Modified Sat Mar 5 21:17:04 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
L <-> U for transpose

Revision 614 - Directory Listing
Modified Sat Mar 5 21:14:43 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
L <-> U for transpose

Revision 613 - Directory Listing
Modified Sat Mar 5 21:13:40 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
+ Matrix_DimnamesSym

Revision 612 - Directory Listing
Modified Fri Mar 4 17:35:12 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
update & extend tests

Revision 611 - Directory Listing
Modified Fri Mar 4 17:34:45 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
\alias{.} for the new methods

Revision 610 - Directory Listing
Modified Fri Mar 4 17:34:19 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
comments only

Revision 609 - Directory Listing
Modified Fri Mar 4 17:34:03 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
add more %*% methods

Revision 608 - Directory Listing
Modified Fri Mar 4 17:33:29 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
- move dim, dimnames, dimnames<-  methods to "Matrix" 
- add more %*% methods

Revision 607 - Directory Listing
Modified Fri Mar 4 17:33:03 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
- move dim, dimnames, dimnames<-  methods from "dgeMatrix" to here
- setAs(* , to = "matrix")

Revision 606 - Directory Listing
Modified Fri Mar 4 17:29:37 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
add "dMatrix" group methods and doc file

Revision 605 - Directory Listing
Modified Fri Mar 4 17:29:02 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
do not Calloc()/Free() in "good" case of check_scalar_string()

Revision 604 - Directory Listing
Modified Fri Mar 4 17:27:51 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
check for integer 'x'

Revision 603 - Directory Listing
Modified Fri Mar 4 12:53:01 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Define %*% method for dtpMatrix and matrix properly

Revision 602 - Directory Listing
Modified Fri Mar 4 12:48:40 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Remove references to pdfactor

Revision 599 - Directory Listing
Modified Fri Mar 4 03:49:53 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Added C function lmer_fitted

Revision 598 - Directory Listing
Modified Fri Mar 4 03:46:22 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
tests for dtpMatrix class

Revision 597 - Directory Listing
Modified Thu Mar 3 19:58:59 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Methods and coercions for the dtpMatrix class

Revision 596 - Directory Listing
Modified Thu Mar 3 05:18:35 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Preparing for 0.95-4 release

Revision 595 - Directory Listing
Modified Thu Mar 3 05:18:11 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Remove pdfactor class

Revision 594 - Directory Listing
Modified Thu Mar 3 05:17:51 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Remove pdfactor class

Revision 593 - Directory Listing
Modified Thu Mar 3 05:17:32 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Remove pdfactor class

Revision 592 - Directory Listing
Modified Thu Mar 3 05:16:50 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Clean up *_validate functions

Revision 591 - Directory Listing
Modified Thu Mar 3 05:16:09 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
C functions for dtpMatrix class

Revision 590 - Directory Listing
Modified Wed Mar 2 19:54:23 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
more coercions

Revision 589 - Directory Listing
Modified Wed Mar 2 19:53:53 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
more coercions

Revision 588 - Directory Listing
Modified Wed Mar 2 18:19:51 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
shorten csc_components_transpose to csc_compTr

Revision 587 - Directory Listing
Modified Wed Mar 2 18:19:15 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
dsTMatrix_as_dsCMatrix

Revision 586 - Directory Listing
Modified Tue Mar 1 14:55:03 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
more "-Wall" dummy init.s

Revision 585 - Directory Listing
Modified Tue Mar 1 14:54:38 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
typo in SelectQueue[o]neWay; comment

Revision 584 - Directory Listing
Modified Tue Mar 1 14:53:29 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
updated via "--force"

Revision 583 - Directory Listing
Modified Tue Mar 1 11:42:12 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
dgCMatrix: needs explicit "dim" method (should not be needed!)

Revision 582 - Directory Listing
Modified Mon Feb 28 18:15:21 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Internationalization and localization

Revision 579 - Directory Listing
Modified Sun Feb 27 00:04:16 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
dimnames(), "dimnames() <-", better t(), etc

Revision 578 - Directory Listing
Modified Sat Feb 26 18:25:09 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
update (also a bit of Doug's)

Revision 577 - Directory Listing
Modified Sat Feb 26 18:24:35 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
update

Revision 576 - Directory Listing
Modified Sat Feb 26 18:18:30 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
prevent segfault {but not "nicely"}

Revision 575 - Directory Listing
Modified Sat Feb 26 18:07:35 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
use "(.)" against "-Wall" warning

Revision 574 - Directory Listing
Modified Sat Feb 26 18:06:32 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
cosmetic

Revision 573 - Directory Listing
Modified Sat Feb 26 18:06:08 2005 UTC (14 years, 4 months ago) by maechler
Original Path: pkg
more group methods and testing them

Revision 572 - Directory Listing
Modified Fri Feb 25 14:11:54 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Inlined function declarations moved within the conditional expression

Revision 570 - Directory Listing
Modified Fri Feb 25 13:21:03 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Move ScotsSec to mlmRev package

Revision 569 - Directory Listing
Modified Fri Feb 25 13:20:28 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Release 0.95-2

Revision 565 - Directory Listing
Modified Tue Feb 22 01:15:45 2005 UTC (14 years, 4 months ago) by bates
Original Path: pkg
Clean up documentation errors exposed by doxygen

Revision 564 - Directory Listing
Modified Sat Feb 19 03:25:17 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Fix compiler warnings

Revision 563 - Directory Listing
Modified Sat Feb 19 02:08:36 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Clean up warnings from compiler

Revision 561 - Directory Listing
Modified Fri Feb 18 19:24:43 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Release 0.95-1

Revision 560 - Directory Listing
Modified Fri Feb 18 14:29:53 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Argument list for cscb_trsm

Revision 559 - Directory Listing
Modified Fri Feb 18 14:29:03 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Changes for non-trivial cscb-trsm

Revision 558 - Directory Listing
Modified Thu Feb 17 18:12:34 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
coercion method documentation

Revision 557 - Directory Listing
Modified Thu Feb 17 01:18:02 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Coercions and methods for the dsTMatrix class

Revision 556 - Directory Listing
Modified Wed Feb 16 20:49:44 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Non-trivial cscb_ldl case

Revision 555 - Directory Listing
Modified Wed Feb 16 20:49:16 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
cosmetic changes - reformating

Revision 554 - Directory Listing
Modified Wed Feb 16 13:43:45 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
clean up logic

Revision 553 - Directory Listing
Modified Wed Feb 16 13:43:17 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
clean up long lines

Revision 552 - Directory Listing
Modified Tue Feb 15 23:39:40 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
triangular, triplet sparse matrices

Revision 551 - Directory Listing
Modified Tue Feb 15 22:28:03 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
triangular, triplet sparse matrices

Revision 548 - Directory Listing
Modified Tue Feb 15 22:13:03 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Suppress test that was causing a segfault

Revision 547 - Directory Listing
Modified Tue Feb 15 22:09:25 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Methods and coercions for the dtTMatrix class

Revision 546 - Directory Listing
Modified Tue Feb 15 22:09:12 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Methods and coercions for the dtTMatrix class

Revision 544 - Directory Listing
Modified Mon Feb 14 21:04:03 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Comment out a test that is causing a segfault

Revision 543 - Directory Listing
Modified Sat Feb 12 13:37:46 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Changes for non-nested vector-valued random effects

Revision 542 - Directory Listing
Modified Thu Feb 10 17:30:10 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
"Arith" group methods work!

Revision 541 - Directory Listing
Modified Thu Feb 10 14:36:45 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
oops!

Revision 540 - Directory Listing
Modified Thu Feb 10 14:32:59 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
more "Done"

Revision 539 - Directory Listing
Modified Thu Feb 10 13:53:28 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
update Version (just in case)

Revision 538 - Directory Listing
Modified Thu Feb 10 13:50:27 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
add @Dimnames (-> new "mm")

Revision 537 - Directory Listing
Modified Thu Feb 10 09:45:31 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
new

Revision 536 - Directory Listing
Modified Thu Feb 10 08:15:12 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
rearranging utility functions in the C code

Revision 534 - Directory Listing
Modified Tue Feb 8 08:59:31 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
use mkString(); "uplo" and "diag" must be uppercase

Revision 533 - Directory Listing
Modified Tue Feb 8 07:30:59 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
coercion

Revision 532 - Directory Listing
Modified Mon Feb 7 17:23:54 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
use "true" matrix; also "show" inaccuracy

Revision 531 - Directory Listing
Modified Mon Feb 7 11:04:53 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Include the $(SUBSTAMP) target

Revision 530 - Directory Listing
Modified Mon Feb 7 10:58:27 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Fixes from the TODO list

Revision 529 - Directory Listing
Modified Mon Feb 7 10:56:34 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Fixes from the TODO list

Revision 528 - Directory Listing
Modified Mon Feb 7 10:52:50 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Spelling mistake

Revision 527 - Directory Listing
Modified Mon Feb 7 10:52:37 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Spelling mistake

Revision 526 - Directory Listing
Modified Mon Feb 7 10:50:20 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Include a dependence of the LIB target on the OBJS

Revision 525 - Directory Listing
Modified Mon Feb 7 10:49:20 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Force a call to Make lib in the subdirectories whenever the SHLIB
target is built.  Right now this isn't working properly.

Revision 524 - Directory Listing
Modified Mon Feb 7 09:30:58 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
tol was too tight

Revision 523 - Directory Listing
Modified Mon Feb 7 09:25:50 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
stop() for error()

Revision 522 - Directory Listing
Modified Mon Feb 7 09:25:25 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
oops! add library(.)

Revision 521 - Directory Listing
Modified Sat Feb 5 17:04:56 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
small update

Revision 520 - Directory Listing
Modified Sat Feb 5 14:41:29 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
add "surprising formula"

Revision 519 - Directory Listing
Modified Sat Feb 5 14:25:56 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
some matrix exponential tests

Revision 518 - Directory Listing
Modified Sat Feb 5 13:55:11 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
emacs header

Revision 517 - Directory Listing
Modified Sat Feb 5 13:54:37 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
more ( need to talk )

Revision 516 - Directory Listing
Modified Sat Feb 5 13:54:20 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
chk.matrix() and more

Revision 515 - Directory Listing
Modified Sat Feb 5 13:53:55 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
example (and indentation)

Revision 514 - Directory Listing
Modified Fri Feb 4 23:57:12 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
minor cleanup

Revision 513 - Directory Listing
Modified Fri Feb 4 23:46:08 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
require() is not needed; ddense.. for "dsp"; cosmetic

Revision 512 - Directory Listing
Modified Fri Feb 4 23:45:12 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
better show(); using new option "max.print"

Revision 511 - Directory Listing
Modified Fri Feb 4 23:44:00 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
update

Revision 510 - Directory Listing
Modified Fri Feb 4 23:36:17 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
dimnames?

Revision 509 - Directory Listing
Modified Fri Feb 4 23:34:01 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
some new tests, using stopifnot()

Revision 508 - Directory Listing
Modified Fri Feb 4 18:22:28 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
oops! (in example)

Revision 507 - Directory Listing
Modified Fri Feb 4 18:19:29 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
2 typos

Revision 506 - Directory Listing
Modified Fri Feb 4 18:19:08 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
cosmetic

Revision 505 - Directory Listing
Modified Fri Feb 4 18:18:48 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
cosmetic;
call  image() in example

Revision 504 - Directory Listing
Modified Fri Feb 4 18:18:25 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
add examples

Revision 503 - Directory Listing
Modified Fri Feb 4 18:18:06 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
typo

Revision 502 - Directory Listing
Modified Fri Feb 4 18:17:53 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
cosmetic

Revision 501 - Directory Listing
Modified Fri Feb 4 18:17:36 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
update

Revision 500 - Directory Listing
Modified Fri Feb 4 18:17:18 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
typo;
extend example with stopifnot()

Revision 499 - Directory Listing
Modified Fri Feb 4 18:16:32 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
- wrap line
- if(.) style in as.Matrix()

Revision 498 - Directory Listing
Modified Fri Feb 4 18:15:54 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
cosmetic

Revision 497 - Directory Listing
Modified Fri Feb 4 18:15:24 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
+2

Revision 496 - Directory Listing
Modified Fri Feb 4 18:14:08 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
- get rid of two extraneous declarations
- use the SWAP(.) macro {as in other places}

Revision 495 - Directory Listing
Modified Thu Feb 3 18:48:31 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Initial implementation of the Schur generic

Revision 494 - Directory Listing
Modified Thu Feb 3 18:47:41 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Cleanup

Revision 493 - Directory Listing
Modified Thu Feb 3 18:47:20 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Move the make_named function to Mutils as Matrix_make_named

Revision 492 - Directory Listing
Modified Thu Feb 3 14:24:03 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Getting package to pass CMD check

Revision 491 - Directory Listing
Modified Wed Feb 2 19:40:26 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
renaming and rearranging classes

Revision 490 - Directory Listing
Modified Wed Feb 2 19:13:42 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
renaming and rearranging classes

Revision 489 - Directory Listing
Modified Wed Feb 2 19:12:03 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
renaming and rearranging classes

Revision 488 - Directory Listing
Modified Wed Feb 2 19:11:51 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
renaming and rearranging classes

Revision 487 - Directory Listing
Modified Wed Feb 2 19:02:36 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
renaming and rearranging classes

Revision 486 - Directory Listing
Modified Wed Feb 2 17:41:09 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
renaming and rearranging classes

Revision 485 - Directory Listing
Modified Wed Feb 2 17:20:55 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
renaming and rearranging classes

Revision 484 - Directory Listing
Modified Wed Feb 2 17:14:07 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
renaming and rearranging classes

Revision 483 - Directory Listing
Modified Wed Feb 2 16:11:21 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
renaming and rearranging classes

Revision 482 - Directory Listing
Modified Wed Feb 2 15:37:31 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
renaming and rearranging classes

Revision 481 - Directory Listing
Modified Wed Feb 2 15:01:50 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Renaming and reorganizing classes

Revision 480 - Directory Listing
Modified Wed Feb 2 14:59:12 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Renaming and reorganizing classes

Revision 479 - Directory Listing
Modified Wed Feb 2 14:52:26 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Renaming and reorganizing classes

Revision 478 - Directory Listing
Modified Wed Feb 2 14:33:51 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Renaming and reorganizing classes

Revision 477 - Directory Listing
Modified Wed Feb 2 14:14:59 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Renaming and reorganizing classes

Revision 476 - Directory Listing
Modified Wed Feb 2 11:51:24 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Change name of slot from factorization to factors

Revision 475 - Directory Listing
Modified Tue Feb 1 14:44:06 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
Martin`s cosmetics

Revision 474 - Directory Listing
Modified Tue Feb 1 14:41:24 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
Hilbert(0)

Revision 473 - Directory Listing
Modified Tue Feb 1 14:41:09 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
more po-tests

Revision 472 - Directory Listing
Modified Mon Jan 31 21:23:39 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
adding

Revision 471 - Directory Listing
Modified Mon Jan 31 21:17:57 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
as.Matrix() shorter; cosmetic

Revision 470 - Directory Listing
Modified Mon Jan 31 21:14:46 2005 UTC (14 years, 5 months ago) by maechler
Original Path: pkg
use *Rout as well

Revision 466 - Directory Listing
Modified Sat Jan 29 14:14:31 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Add an externally accessible entry point to lmer_Crosstab

Revision 465 - Directory Listing
Modified Sat Jan 29 14:14:01 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Add an externally accessible entry point to lmer_Crosstab

Revision 464 - Directory Listing
Modified Sat Jan 29 14:12:53 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Clean up Lind calculation

Revision 463 - Directory Listing
Modified Sat Jan 29 14:11:34 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Make make clean cleaner

Revision 462 - Directory Listing
Modified Sat Jan 29 14:10:36 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Move lmer class to lme4

Revision 461 - Directory Listing
Modified Sat Jan 29 14:09:38 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Add expm function

Revision 460 - Directory Listing
Modified Sat Jan 29 14:08:32 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Preparation for new release

Revision 459 - Directory Listing
Modified Sat Jan 29 14:08:22 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
Preparation for new release

Revision 458 - Directory Listing
Modified Sat Jan 29 14:07:34 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
A valuable reference

Revision 451 - Directory Listing
Modified Sun Jan 23 10:05:53 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
New coercion method for cscBlocked objects

Revision 450 - Directory Listing
Modified Sun Jan 23 10:05:02 2005 UTC (14 years, 5 months ago) by bates
Original Path: pkg
New release

Revision 448 - Directory Listing
Modified Fri Jan 21 21:59:45 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Release 0.8-23

Revision 447 - Directory Listing
Modified Fri Jan 21 12:17:56 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Change char flags to cblas enum types

Revision 445 - Directory Listing
Modified Wed Jan 19 19:06:24 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Off-diagonals from L, not ZZpO

Revision 444 - Directory Listing
Modified Wed Jan 19 19:05:15 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Off-diagonals from L, not ZZpO

Revision 443 - Directory Listing
Modified Wed Jan 19 11:28:00 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Remove references to the Linv slot.  Change to the extended parent
pairs.  Extensive changes in lmer_invert.  These still probably have
errors but this check in is to provide a checkpoint.

Revision 442 - Directory Listing
Modified Wed Jan 19 11:25:39 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Remove any references to Linv.  Rewrite routines to use a solution
from L rather than multiplication by the inverse.  Change calling
sequences to use the Parent array.  Change the parent arrays to
extended parent pairs.

Revision 441 - Directory Listing
Modified Wed Jan 19 11:22:07 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
See if use of cblas would be a good idea

Revision 440 - Directory Listing
Modified Wed Jan 19 11:21:28 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Remove Linv slot in lmer class

Revision 439 - Directory Listing
Modified Wed Jan 19 11:20:32 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
See if use of cblas would be a good idea

Revision 438 - Directory Listing
Modified Mon Jan 17 12:48:32 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Remove mistaken transpose

Revision 437 - Directory Listing
Modified Mon Jan 17 12:47:29 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Remove Linv references

Revision 436 - Directory Listing
Modified Mon Jan 17 12:46:13 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Add slots to lmer class

Revision 434 - Directory Listing
Modified Thu Jan 13 19:36:12 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Added and modified many functions to do solutions rather than inversions.

Revision 433 - Directory Listing
Modified Thu Jan 13 19:35:19 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Add the bVar slot to the lmer object

Revision 432 - Directory Listing
Modified Thu Jan 13 19:34:37 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Define the AZERO macro

Revision 431 - Directory Listing
Modified Thu Jan 13 19:34:03 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Use the AZERO macro

Revision 430 - Directory Listing
Modified Thu Jan 13 19:32:26 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Add definitions of cscb_trsm and cscb_trcbsm

Revision 429 - Directory Listing
Modified Thu Jan 13 19:31:10 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Many changes with respect to the representation and calculation steps.

Revision 425 - Directory Listing
Modified Wed Jan 5 15:26:34 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
decrement when counting down

Revision 424 - Directory Listing
Modified Wed Jan 5 13:50:30 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Minor typos

Revision 422 - Directory Listing
Modified Tue Jan 4 23:45:15 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Check in prior to leaving for Zuerich

Revision 420 - Directory Listing
Modified Mon Jan 3 19:26:58 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Change to the lmer representation

Revision 419 - Directory Listing
Modified Mon Jan 3 19:21:18 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Change to the lmer representation

Revision 418 - Directory Listing
Modified Mon Jan 3 19:16:36 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Change to the lmer representation

Revision 417 - Directory Listing
Modified Mon Jan 3 19:14:22 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Change to the lmer representation

Revision 415 - Directory Listing
Modified Mon Jan 3 19:05:11 2005 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Change to the lmer representation

Revision 412 - Directory Listing
Modified Tue Dec 28 15:06:55 2004 UTC (14 years, 6 months ago) by bates
Original Path: pkg


Revision 410 - Directory Listing
Modified Tue Dec 28 14:51:42 2004 UTC (14 years, 6 months ago) by bates
Original Path: pkg
Working on the lmer classes

Revision 398 - Directory Listing
Modified Thu Dec 16 19:31:11 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
New release

Revision 397 - Directory Listing
Modified Thu Dec 16 19:15:32 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Add arguments to ssclme_to_lme

Revision 396 - Directory Listing
Modified Thu Dec 16 19:14:49 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Document new coercion and determinant methods

Revision 392 - Directory Listing
Modified Tue Dec 14 20:01:16 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg


Revision 391 - Directory Listing
Modified Tue Dec 14 20:00:15 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Add a coercion for tripletMatrix to matrix

Revision 390 - Directory Listing
Modified Tue Dec 14 19:58:55 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Add a coercion for tripletMatrix to matrix

Revision 389 - Directory Listing
Modified Tue Dec 14 19:58:04 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Remove bbCrosstab and references to it

Revision 388 - Directory Listing
Modified Mon Dec 13 16:00:22 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
New release

Revision 387 - Directory Listing
Modified Mon Dec 13 16:00:04 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Keep -Wall happy

Revision 386 - Directory Listing
Modified Mon Dec 13 15:59:24 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Fix bug in multivariate/multiple groups case

Revision 379 - Directory Listing
Modified Sat Dec 11 13:48:29 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
make -Wall happy

Revision 378 - Directory Listing
Modified Sat Dec 11 13:47:45 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
make -Wall happy

Revision 377 - Directory Listing
Modified Sat Dec 11 13:46:42 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
make -Wall happy

Revision 376 - Directory Listing
Modified Sat Dec 11 13:44:01 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
declaration of R_alloc

Revision 375 - Directory Listing
Modified Sun Dec 5 13:55:48 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg


Revision 374 - Directory Listing
Modified Sun Dec 5 13:55:19 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
renaming bbCrosstab to bCrosstab

Revision 373 - Directory Listing
Modified Sun Dec 5 13:54:32 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Fixed nested scalar r.e., multivariate bug still outstanding

Revision 372 - Directory Listing
Modified Sun Dec 5 13:53:29 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
R-specific versions of ldl

Revision 371 - Directory Listing
Modified Sun Dec 5 13:52:25 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
R-specific versions of ldl

Revision 370 - Directory Listing
Modified Sun Dec 5 13:52:06 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
R-specific versions of ldl

Revision 369 - Directory Listing
Modified Sun Dec 5 13:51:27 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
R-specific versions of ldl

Revision 368 - Directory Listing
Modified Sun Dec 5 13:50:54 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
R-specific versions of ldl

Revision 367 - Directory Listing
Modified Sun Dec 5 13:50:43 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
R-specific versions of ldl

Revision 366 - Directory Listing
Modified Sun Dec 5 13:49:51 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
R-specific versions of ldl

Revision 359 - Directory Listing
Modified Sat Nov 27 17:58:23 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Add a call to ldl_numeric to obtain row indices of diagonal blocks of L

Revision 358 - Directory Listing
Modified Sat Nov 27 17:57:19 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
separate suboperations from Parent_inverse

Revision 357 - Directory Listing
Modified Sat Nov 27 17:56:13 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
silly typo

Revision 356 - Directory Listing
Modified Sat Nov 27 01:45:39 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Add block updates in bCrosstab_convert

Revision 355 - Directory Listing
Modified Sat Nov 27 01:45:01 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Make Parent_inverse visible in include file

Revision 354 - Directory Listing
Modified Sat Nov 27 01:44:15 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Extract dependencies to an include file

Revision 353 - Directory Listing
Modified Sat Nov 27 01:43:15 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Make factor reordering for bCrosstab optional

Revision 352 - Directory Listing
Modified Tue Nov 23 15:41:03 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
remove redundant method alias

Revision 351 - Directory Listing
Modified Tue Nov 23 15:40:28 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Move include file to C sources so the .h file can be included without pulling in a bunch of other stuff

Revision 350 - Directory Listing
Modified Tue Nov 23 15:39:45 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg


Revision 349 - Directory Listing
Modified Tue Nov 23 15:39:23 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
Change name of blocked/blocked crosstabulation to blocked crosstabulation

Revision 348 - Directory Listing
Modified Tue Nov 23 15:38:31 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
add blocked crosstabulations

Revision 347 - Directory Listing
Modified Tue Nov 23 15:37:58 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
add blocked crosstabulations

Revision 346 - Directory Listing
Modified Tue Nov 23 15:37:12 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
simple test of crossproduct for valgrind

Revision 345 - Directory Listing
Modified Tue Nov 23 15:35:55 2004 UTC (14 years, 7 months ago) by bates
Original Path: pkg
keep valgrind happy

Revision 344 - Directory Listing
Modified Mon Nov 15 23:29:41 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Add

Revision 343 - Directory Listing
Modified Mon Nov 15 23:29:28 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Fix on uninitialized value

Revision 342 - Directory Listing
Modified Mon Nov 15 13:55:52 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Updates for factorization name and default value

Revision 341 - Directory Listing
Modified Fri Nov 12 21:20:14 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Use Matrix_rcondSym

Revision 340 - Directory Listing
Modified Fri Nov 12 21:19:39 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Add syrk code

Revision 339 - Directory Listing
Modified Fri Nov 12 21:19:19 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Add syrk code

Revision 338 - Directory Listing
Modified Fri Nov 12 21:17:36 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Initialize all slots

Revision 337 - Directory Listing
Modified Fri Nov 12 21:13:59 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Add addition method

Revision 336 - Directory Listing
Modified Fri Nov 12 21:13:40 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Add tcrossprod method

Revision 335 - Directory Listing
Modified Fri Nov 12 21:12:54 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Add cscBlocked class

Revision 334 - Directory Listing
Modified Fri Nov 12 21:11:45 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Add generics

Revision 333 - Directory Listing
Modified Fri Nov 12 21:10:17 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Add classes

Revision 332 - Directory Listing
Modified Fri Nov 12 21:04:36 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
initialize all slots in a NEW_OBJECT

Revision 331 - Directory Listing
Modified Fri Nov 12 21:03:24 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
remove zeros from sparse matrix

Revision 330 - Directory Listing
Modified Fri Nov 12 21:02:51 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
update methods

Revision 329 - Directory Listing
Modified Fri Nov 12 21:01:19 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Keep symbols and filenames consistent

Revision 328 - Directory Listing
Modified Sat Nov 6 18:05:00 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Keep Makefile.win in sync with Makefile

Revision 327 - Directory Listing
Modified Sat Nov 6 18:04:31 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
New release

Revision 326 - Directory Listing
Modified Sat Nov 6 18:03:14 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Add blocked/blocked cross-tabulation class

Revision 325 - Directory Listing
Modified Sat Nov 6 18:03:00 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Add blocked/blocked cross-tabulation class

Revision 324 - Directory Listing
Modified Sat Nov 6 18:02:01 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Cosmetic changes

Revision 311 - Directory Listing
Modified Wed Oct 27 21:41:02 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Keep -Wall happy

Revision 310 - Directory Listing
Modified Wed Oct 27 21:40:08 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
add a blas-like routine

Revision 309 - Directory Listing
Modified Wed Oct 27 21:40:02 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
add a blas-like routine

Revision 308 - Directory Listing
Modified Wed Oct 27 21:39:44 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
cosmetic changes

Revision 307 - Directory Listing
Modified Wed Oct 27 21:38:58 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Changes for check on Debian dgesdd

Revision 306 - Directory Listing
Modified Wed Oct 27 21:38:33 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Changes for check on Debian dgesdd

Revision 305 - Directory Listing
Modified Wed Oct 27 21:36:19 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
updates and downdates

Revision 304 - Directory Listing
Modified Wed Oct 27 21:35:13 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
lmeRep_invert now applies to multiple, nested grouping factors

Revision 303 - Directory Listing
Modified Wed Oct 27 21:33:03 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg


Revision 302 - Directory Listing
Modified Wed Oct 27 21:32:37 2004 UTC (14 years, 8 months ago) by bates
Original Path: pkg
Remove PACKAGE="Matrix" in .Call

Revision 301 - Directory Listing
Modified Sun Oct 17 05:06:04 2004 UTC (14 years, 9 months ago) by bates
Original Path: pkg
transfer to another computer

Revision 300 - Directory Listing
Modified Tue Oct 12 15:44:15 2004 UTC (14 years, 9 months ago) by bates
Original Path: pkg
Adding lmeRep_L_sm and support routines

Revision 299 - Directory Listing
Modified Fri Oct 8 14:48:06 2004 UTC (14 years, 9 months ago) by bates
Original Path: pkg
Only positions, not counts, from crossproduct

Revision 298 - Directory Listing
Modified Fri Oct 8 13:47:20 2004 UTC (14 years, 9 months ago) by bates
Original Path: pkg
added validate functions

Revision 297 - Directory Listing
Modified Mon Oct 4 17:13:42 2004 UTC (14 years, 9 months ago) by bates
Original Path: pkg
Add registration of .Call functions

Revision 296 - Directory Listing
Modified Mon Oct 4 17:13:29 2004 UTC (14 years, 9 months ago) by bates
Original Path: pkg
Add registration of .Call functions

Revision 291 - Directory Listing
Modified Sun Oct 3 21:51:33 2004 UTC (14 years, 9 months ago) by bates
Original Path: pkg
Release 0.8-15

Revision 290 - Directory Listing
Modified Sat Oct 2 19:22:24 2004 UTC (14 years, 9 months ago) by deepayan
Original Path: pkg
fixed minor bug in panel function

Revision 283 - Directory Listing
Modified Sat Oct 2 17:05:34 2004 UTC (14 years, 9 months ago) by bates
Original Path: pkg
check for lattice package in image methods

Revision 282 - Directory Listing
Modified Sat Oct 2 15:03:47 2004 UTC (14 years, 9 months ago) by bates
Original Path: pkg
Bug fixes in 0.8-14

Revision 281 - Directory Listing
Modified Sat Oct 2 15:03:09 2004 UTC (14 years, 9 months ago) by bates
Original Path: pkg
Document cscBlocked class

Revision 280 - Directory Listing
Modified Mon Sep 13 12:32:23 2004 UTC (14 years, 10 months ago) by bates
Original Path: pkg
minor format change

Revision 279 - Directory Listing
Modified Sat Sep 11 14:40:25 2004 UTC (14 years, 10 months ago) by deepayan
Original Path: pkg
fixed image method

Revision 275 - Directory Listing
Modified Fri Sep 3 18:55:14 2004 UTC (14 years, 10 months ago) by bates
Original Path: pkg
New storage format - currently works for single grouping factor

Revision 274 - Directory Listing
Modified Thu Sep 2 23:14:51 2004 UTC (14 years, 10 months ago) by bates
Original Path: pkg
Interim version of lmeRep - not yet complete

Revision 273 - Directory Listing
Modified Thu Sep 2 23:14:16 2004 UTC (14 years, 10 months ago) by bates
Original Path: pkg
Add cscBlocked

Revision 272 - Directory Listing
Modified Thu Sep 2 23:14:00 2004 UTC (14 years, 10 months ago) by bates
Original Path: pkg
Add cscBlocked, tweak lmeRep

Revision 271 - Directory Listing
Modified Thu Sep 2 23:12:30 2004 UTC (14 years, 10 months ago) by bates
Original Path: pkg
Prepare for new release

Revision 268 - Directory Listing
Modified Tue Aug 31 19:13:33 2004 UTC (14 years, 10 months ago) by bates
Original Path: pkg
New version

Revision 264 - Directory Listing
Modified Mon Aug 30 13:24:53 2004 UTC (14 years, 10 months ago) by bates
Original Path: pkg
Initial lmeRep_update_mm modifications for multiple grouping factors

Revision 263 - Directory Listing
Modified Thu Aug 26 16:01:35 2004 UTC (14 years, 10 months ago) by bates
Original Path: pkg
extending lmeRep to multiple nested grouping factors

Revision 258 - Directory Listing
Modified Tue Aug 24 14:22:13 2004 UTC (14 years, 10 months ago) by bates
Original Path: pkg
Preparing for a new release

Revision 257 - Directory Listing
Modified Tue Aug 24 02:08:08 2004 UTC (14 years, 10 months ago) by bates
Original Path: pkg
Remove taucs, add lmeRep, new release

Revision 255 - Directory Listing
Modified Fri Aug 20 16:27:15 2004 UTC (14 years, 11 months ago) by bates
Original Path: pkg
Add the lmeRep class

Revision 254 - Directory Listing
Modified Thu Aug 19 15:20:27 2004 UTC (14 years, 11 months ago) by deepayan
Original Path: pkg
fixed problem in image method when not all rows and columns had at least one entry

Revision 250 - Directory Listing
Modified Tue Aug 17 16:50:27 2004 UTC (14 years, 11 months ago) by bates
Original Path: pkg
cleanup in EMsteps_verbose_print

Revision 247 - Directory Listing
Modified Mon Jul 12 17:41:57 2004 UTC (15 years ago) by bates
Original Path: pkg
Combine ssclme_coef and ssclme_coefUnc, ssclme_coefGets and ssclme_coefGetsUnc.  Reorganize gradient code in preparation for Hessian calculations.

Revision 245 - Directory Listing
Modified Mon Jul 12 12:46:54 2004 UTC (15 years ago) by bates
Original Path: pkg
Remove warnings, new release, change gradient calculation method

Revision 241 - Directory Listing
Modified Wed Jul 7 18:23:11 2004 UTC (15 years ago) by bates
Original Path: pkg
Remove pdMat classes

Revision 238 - Directory Listing
Modified Fri Jul 2 14:36:08 2004 UTC (15 years ago) by bates
Original Path: pkg
Updated Hessian method to symmetrize the result

Revision 237 - Directory Listing
Modified Thu Jul 1 03:20:33 2004 UTC (15 years ago) by bates
Original Path: pkg
Added stub of a Hessian generic and methods.

Revision 229 - Directory Listing
Modified Tue Jun 15 21:37:15 2004 UTC (15 years, 1 month ago) by bates
Original Path: pkg
Escape % characters in .Rd files

Revision 213 - Directory Listing
Modified Mon Jun 7 19:32:00 2004 UTC (15 years, 1 month ago) by bates
Original Path: pkg
Ready for next release

Revision 209 - Directory Listing
Modified Thu Jun 3 18:22:56 2004 UTC (15 years, 1 month ago) by bates
Original Path: pkg
Combine the two ldl_symbolic routines

Revision 205 - Directory Listing
Modified Tue Jun 1 21:36:47 2004 UTC (15 years, 1 month ago) by bates
Original Path: pkg
Prepare for next release

Revision 202 - Directory Listing
Modified Tue Jun 1 19:38:39 2004 UTC (15 years, 1 month ago) by bates
Original Path: pkg
Be more careful in calls to require

Revision 190 - Directory Listing
Modified Mon May 31 19:52:33 2004 UTC (15 years, 1 month ago) by bates
Original Path: pkg
updated automatically

Revision 189 - Directory Listing
Modified Mon May 31 19:03:51 2004 UTC (15 years, 1 month ago) by bates
Original Path: pkg
Doxygen configuration file

Revision 188 - Directory Listing
Modified Mon May 31 18:50:01 2004 UTC (15 years, 1 month ago) by bates
Original Path: pkg
Moving Doxyfile to the Matrix package

Revision 185 - Directory Listing
Modified Sun May 30 22:46:01 2004 UTC (15 years, 1 month ago) by bates
Original Path: pkg
Adding garbage collection to timings

Revision 184 - Directory Listing
Modified Sun May 30 22:38:37 2004 UTC (15 years, 1 month ago) by bates
Original Path: pkg
Experiments with projecting

Revision 176 - Directory Listing
Modified Fri May 28 13:23:44 2004 UTC (15 years, 1 month ago) by bates
Original Path: pkg
Adding documentation - cleaning up code

Revision 174 - Directory Listing
Modified Wed May 19 16:45:00 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
remove unused variable

Revision 168 - Directory Listing
Modified Wed May 19 16:18:48 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Multiple factors with some ni > 1

Revision 166 - Directory Listing
Modified Sat May 15 12:59:43 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Accurate EM iteration count

Revision 164 - Directory Listing
Modified Fri May 14 21:00:04 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Moving utilities to Matrix package

Revision 159 - Directory Listing
Modified Sun May 9 22:06:53 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Remove storage of L-inverse

Revision 158 - Directory Listing
Modified Sun May 9 17:06:12 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
maxLI=0 option works

Revision 157 - Directory Listing
Modified Sun May 9 14:26:36 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
More attempts at the bVar calculation

Revision 153 - Directory Listing
Modified Fri May 7 19:35:35 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Add routines to project and ldl_symbolic the ctab

Revision 150 - Directory Listing
Modified Tue May 4 22:52:19 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Confused conflicts in checkins

Revision 149 - Directory Listing
Modified Tue May 4 22:30:39 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Previous to changing permutation method

Revision 148 - Directory Listing
Modified Mon May 3 12:49:17 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Rearranging code to isolate Metis includes

Revision 146 - Directory Listing
Modified Sat May 1 20:27:04 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Yet another permutation calculation method

Revision 143 - Directory Listing
Modified Fri Apr 30 20:33:01 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Permutations and update_mm

Revision 140 - Directory Listing
Modified Thu Apr 29 22:54:12 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Change release number

Revision 127 - Directory Listing
Modified Sun Apr 25 18:06:27 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Remove useLast argument

Revision 125 - Directory Listing
Modified Sun Apr 25 11:59:37 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
gradients missing when deviance missing

Revision 122 - Directory Listing
Modified Fri Apr 23 22:06:08 2004 UTC (15 years, 2 months ago) by bates
Original Path: pkg
Change ssclme_variances call

Revision 115 - Directory Listing
Modified Wed Apr 21 22:37:28 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
updated ssclme_collapse

Revision 114 - Directory Listing
Modified Wed Apr 21 20:45:22 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Added ssclme_collapse

Revision 113 - Directory Listing
Modified Tue Apr 20 17:34:49 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Correction for gradient and EMsteps

Revision 112 - Directory Listing
Modified Tue Apr 20 17:34:18 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
New release

Revision 111 - Directory Listing
Modified Tue Apr 20 15:46:04 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Release 0.8-5

Revision 109 - Directory Listing
Modified Mon Apr 19 17:44:39 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Logic error in ssclme_update_mm

Revision 108 - Directory Listing
Modified Mon Apr 19 17:44:22 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Logic error in ssclme_update_mm

Revision 106 - Directory Listing
Modified Mon Apr 19 00:48:02 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
More work on gradient (still not correct)

Revision 105 - Directory Listing
Modified Sun Apr 18 22:12:10 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Added gradient, consistent order of parameters

Revision 104 - Directory Listing
Modified Sun Apr 18 19:21:57 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
analytic gradient except for unconstrained, multidimensional case

Revision 101 - Directory Listing
Modified Sun Apr 18 14:59:53 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Add gradient calculation

Revision 100 - Directory Listing
Modified Sat Apr 17 17:03:59 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
First cut at gradient

Revision 97 - Directory Listing
Modified Sat Apr 17 16:57:42 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Cleanup of header file

Revision 93 - Directory Listing
Modified Fri Apr 16 21:19:40 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
New method of choosing between ties

Revision 92 - Directory Listing
Modified Fri Apr 16 21:18:59 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Watch methods and exports

Revision 86 - Directory Listing
Modified Thu Apr 15 21:40:17 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Allow useLast option in sscCrosstab_groupedPerm

Revision 85 - Directory Listing
Modified Thu Apr 15 20:50:57 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Working version of sscCrosstab_groupedPerm but about to do surgery on it

Revision 83 - Directory Listing
Modified Thu Apr 15 02:51:07 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Working version of sscCrosstab_groupedPerm - still needs work

Revision 82 - Directory Listing
Modified Wed Apr 14 23:20:06 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Updates to sscCrosstab_groupedPerm

Revision 80 - Directory Listing
Modified Wed Apr 14 23:01:49 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Release 0.8-4

Revision 79 - Directory Listing
Modified Wed Apr 14 22:55:10 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Documentation updates

Revision 78 - Directory Listing
Modified Wed Apr 14 20:44:38 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
New release

Revision 77 - Directory Listing
Modified Wed Apr 14 20:44:19 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
New (experimental) groupedPerm

Revision 76 - Directory Listing
Modified Wed Apr 14 20:43:40 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
ssclme_EMsteps miscalculation

Revision 75 - Directory Listing
Modified Wed Apr 14 20:43:06 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Fix Makefile.win

Revision 74 - Directory Listing
Modified Wed Apr 14 16:37:24 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Original version of sscCrosstab_groupedPerm is about to be dismembered

Revision 73 - Directory Listing
Modified Tue Apr 13 15:53:38 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
R version of fill-reducing permutation

Revision 72 - Directory Listing
Modified Mon Apr 12 22:25:55 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
added R version of groupedPerm function, corrected sscCrosstab arguments

Revision 71 - Directory Listing
Modified Mon Apr 12 22:08:52 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Release 0.8-3 to fix Makefile.win

Revision 70 - Directory Listing
Modified Mon Apr 12 12:10:01 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Adding coercions - fixing bugs

Revision 58 - Directory Listing
Modified Tue Apr 6 22:10:05 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg


Revision 57 - Directory Listing
Modified Tue Apr 6 22:09:52 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Minor change for VarCorr

Revision 55 - Directory Listing
Modified Tue Apr 6 17:24:29 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Moved MixedEffects vignette to lme4 package

Revision 52 - Directory Listing
Modified Tue Apr 6 02:54:14 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Lack of inclusion picked up by -Wall

Revision 51 - Directory Listing
Modified Tue Apr 6 02:37:45 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Release 0.8-2

Revision 50 - Directory Listing
Modified Tue Apr 6 02:27:37 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Removing explicit umfpack code

Revision 49 - Directory Listing
Modified Tue Apr 6 02:26:13 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg


Revision 48 - Directory Listing
Modified Tue Apr 6 02:25:26 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Cleaning up from R CMD check

Revision 47 - Directory Listing
Modified Tue Apr 6 02:25:00 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Move triplet_to_col from umfpack

Revision 45 - Directory Listing
Modified Mon Apr 5 01:06:55 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Added ssclme_variances

Revision 43 - Directory Listing
Modified Tue Mar 30 23:26:33 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
remove unnecessarily complicated C code for coercion (better done in R code)

Revision 42 - Directory Listing
Modified Tue Mar 30 23:25:17 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
image method using lattice

Revision 41 - Directory Listing
Modified Tue Mar 30 23:23:53 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Move image method here

Revision 40 - Directory Listing
Modified Tue Mar 30 23:21:34 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Change coersions to R code only

Revision 34 - Directory Listing
Modified Mon Mar 29 01:49:38 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Correct column of b[[i]] in _fitted

Revision 28 - Directory Listing
Modified Sun Mar 28 17:06:05 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Added ssclme_fitted function

Revision 22 - Directory Listing
Modified Sat Mar 27 18:17:00 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Dimensions of b-related values, dimnames

Revision 21 - Directory Listing
Modified Sat Mar 27 00:06:02 2004 UTC (15 years, 3 months ago) by bates
Original Path: pkg
Changing dimensions in bVar and returned value from _ranef

Revision 19 - Directory Listing
Modified Tue Mar 23 23:29:55 2004 UTC (15 years, 4 months ago) by bates
Original Path: pkg
Allow unconstrained coefficients

Revision 18 - Directory Listing
Modified Tue Mar 23 23:29:32 2004 UTC (15 years, 4 months ago) by bates
Original Path: pkg
Allow unconstrained coefficients

Revision 17 - Directory Listing
Modified Tue Mar 23 23:28:51 2004 UTC (15 years, 4 months ago) by bates
Original Path: pkg
Cleaning up

Revision 14 - Directory Listing
Modified Tue Mar 23 13:16:47 2004 UTC (15 years, 4 months ago) by bates
Original Path: pkg
initial version

Revision 13 - Directory Listing
Modified Tue Mar 23 13:16:19 2004 UTC (15 years, 4 months ago) by bates
Original Path: pkg
Add diag slot to tscMatrix

Revision 11 - Directory Listing
Modified Tue Mar 23 13:15:04 2004 UTC (15 years, 4 months ago) by bates
Original Path: pkg
Change name of C function ssclme_EMsteps

Revision 10 - Directory Listing
Added Mon Mar 22 20:20:05 2004 UTC (15 years, 4 months ago) by bates
Original Path: pkg
Initial import

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