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Revision 2817 - Directory Listing
Modified Thu Dec 12 10:30:04 2013 UTC (3 years, 3 months ago) by jarioksa
maintenance after CRAN release of vegan_2.0-10

Revision 2816 - Directory Listing
Modified Thu Dec 12 10:26:12 2013 UTC (3 years, 3 months ago) by jarioksa
CRAN release 2.0-10

Revision 2815 - Directory Listing
Modified Wed Dec 11 13:58:49 2013 UTC (3 years, 3 months ago) by jarioksa
patch from github: new email for Eduard Szöcs

Revision 2813 - Directory Listing
Modified Mon Dec 9 08:09:23 2013 UTC (3 years, 3 months ago) by jarioksa
vegan actually depends on R >= 2.15.0: paste0()

Revision 2812 - Directory Listing
Modified Sun Dec 8 15:19:45 2013 UTC (3 years, 3 months ago) by jarioksa
NEWS about 2.0-10

Revision 2811 - Directory Listing
Modified Sun Dec 8 07:44:18 2013 UTC (3 years, 3 months ago) by jarioksa
merge 2810 to vegan 2.0-10 (2809 escaped in previous commit)

Revision 2810 - Directory Listing
Modified Sun Dec 8 07:36:14 2013 UTC (3 years, 3 months ago) by jarioksa
cleaner handling of all non-numeric variables as factors in envfit

Revision 2808 - Directory Listing
Modified Thu Dec 5 12:34:46 2013 UTC (3 years, 3 months ago) by jarioksa
merge revs in range 2678 to 2713 to 2.0-10

Revision 2807 - Directory Listing
Modified Thu Dec 5 11:50:52 2013 UTC (3 years, 3 months ago) by jarioksa
merge small bug fixes and enhancements to 2.0-10 (up to r2641)

Revision 2806 - Directory Listing
Modified Thu Dec 5 11:14:49 2013 UTC (3 years, 3 months ago) by jarioksa
open vegan 2.0-10: adapt permutest.betadisper to permute 0.8-0 in CRAN

Revision 2623 - Directory Listing
Modified Wed Sep 25 08:10:25 2013 UTC (3 years, 6 months ago) by jarioksa
janitorial after release of vegan 2.0-9

Revision 2622 - Directory Listing
Modified Wed Sep 25 08:05:02 2013 UTC (3 years, 6 months ago) by jarioksa
release vegan 2.0-9

Revision 2620 - Directory Listing
Modified Wed Sep 18 18:01:03 2013 UTC (3 years, 6 months ago) by jarioksa
NEWS about non-changes in vegan 2.0-9

Revision 2619 - Directory Listing
Modified Wed Sep 11 09:12:12 2013 UTC (3 years, 6 months ago) by jarioksa
merge r2618: a typo

Revision 2617 - Directory Listing
Modified Wed Sep 11 08:59:36 2013 UTC (3 years, 6 months ago) by jarioksa
merge small edits to vegan 2.0-9

r2592: varpart.Rd gives more detailed explanations
r2598: remove workarounds for R <= 2.12.0 (we depend now on R 2.14.0)
r2599: remove workaround for R <= 2.13.0
r2600: print.vectorfit zaps zeros
r2605,7: FAQ about La.svd errors in cca/rda/capscale.

Revision 2616 - Directory Listing
Modified Wed Sep 11 08:34:17 2013 UTC (3 years, 6 months ago) by jarioksa
merge r2597: move vignettes to vignettes/ directory and depend on R >= 2.14.0

Revision 2615 - Directory Listing
Modified Wed Sep 11 07:22:45 2013 UTC (3 years, 6 months ago) by jarioksa
merge edits to Rnw files

includes reformatting as standard article, mostly with two columns,
and adding references to diversity-vegan.Rnw. decision-vegan.Rnw
needed hand-editing, because text on parallel processing was not merged.
Prepares for moving vignettes to vignettes/ directory (not done yet).

Revision 2614 - Directory Listing
Modified Tue Sep 10 16:14:13 2013 UTC (3 years, 6 months ago) by jarioksa
merge r2600 (tools::: in vegandocs) and r2613 ('medoid' -> 'median' in betadisper)

Revision 2596 - Directory Listing
Modified Mon Aug 26 07:38:35 2013 UTC (3 years, 7 months ago) by jarioksa
merge r2593: stats::: in anova.ccabyaxis

Revision 2595 - Directory Listing
Modified Mon Aug 26 07:29:16 2013 UTC (3 years, 7 months ago) by jarioksa
vegan 2.0-9 depends on lattice (merge 2584,6 + edit NAMESPACE)

Revision 2594 - Directory Listing
Modified Mon Aug 26 07:11:27 2013 UTC (3 years, 7 months ago) by jarioksa
vegandocs tools::: removal needs NAMESPACE update

Revision 2591 - Directory Listing
Modified Fri Aug 23 12:01:41 2013 UTC (3 years, 7 months ago) by jarioksa
merge r2590 (typos)

Revision 2589 - Directory Listing
Modified Fri Aug 23 11:49:17 2013 UTC (3 years, 7 months ago) by jarioksa
merge to 2.0-9 all itsy bitsy teenie weenie things that do not trigger conflicts

Revision 2556 - Directory Listing
Modified Wed Jul 10 19:44:39 2013 UTC (3 years, 8 months ago) by jarioksa
released vegan 2.0-8

Revision 2549 - Directory Listing
Modified Wed Jul 10 08:13:25 2013 UTC (3 years, 8 months ago) by jarioksa
update NEWS for 2.0-8

Revision 2548 - Directory Listing
Modified Wed Jul 10 08:04:46 2013 UTC (3 years, 8 months ago) by jarioksa
merge small things skipped earlier, among them add plot.ordipointlabel

Revision 2547 - Directory Listing
Modified Tue Jul 9 13:54:12 2013 UTC (3 years, 8 months ago) by jarioksa
NEWS about 2.0-8

Revision 2546 - Directory Listing
Modified Tue Jul 9 13:32:28 2013 UTC (3 years, 8 months ago) by jarioksa
merge r2495,8: test direction in oecosimu

Revision 2545 - Directory Listing
Modified Tue Jul 9 13:22:12 2013 UTC (3 years, 8 months ago) by jarioksa
merge ordisurf upgrades r2490:2493, 2534

Revision 2544 - Directory Listing
Modified Tue Jul 9 13:07:03 2013 UTC (3 years, 8 months ago) by jarioksa
Merge easy and clear fixes to vegan 2.0-8

* merge r2540: remove hard-coded inconsolata fonts.
* merge r2539: stressplot return data in input order.
* merge r2538: use expression(R^2) in stressplot.
* merge r2535, 2536: better positioning of arrow labels.
* merge r2533: ordipointlabel uses ordiArgAbsorber.
* merge r2504: notation in adipart.Rd.
* merge r2497: avoid visible ~ in .Rnw.
* merge r2484 thru 2486: betadisper fixes

Revision 2483 - Directory Listing
Modified Tue Mar 19 14:22:26 2013 UTC (4 years ago) by jarioksa
vegan 2.0-7 released to CRAN

Revision 2482 - Directory Listing
Modified Tue Mar 19 09:34:36 2013 UTC (4 years ago) by jarioksa
edits for release 2.0-7

Revision 2479 - Directory Listing
Modified Sat Mar 16 20:47:06 2013 UTC (4 years ago) by jarioksa
warn external developers about deprecation of u.eig, v.eig, wa.eig in cca/rda/capscale results

Revision 2478 - Directory Listing
Modified Sat Mar 9 15:35:10 2013 UTC (4 years ago) by jarioksa
merge r2476: return only a scores matrix from wcmdscale, unless extra items are requested

Revision 2477 - Directory Listing
Modified Sat Mar 9 15:30:32 2013 UTC (4 years ago) by jarioksa
NEWS about r2475: set maxit in metaMDS()

Revision 2475 - Directory Listing
Modified Fri Mar 8 09:15:18 2013 UTC (4 years ago) by jarioksa
handcraft r2447: set maxit in metaMDS

Revision 2474 - Directory Listing
Modified Fri Mar 8 08:44:34 2013 UTC (4 years ago) by jarioksa
version up to 2.0-7

Revision 2473 - Directory Listing
Modified Thu Mar 7 14:14:15 2013 UTC (4 years ago) by jarioksa
NEWS about things merged to 2.0-7

Revision 2472 - Directory Listing
Modified Thu Mar 7 08:56:26 2013 UTC (4 years ago) by jarioksa
 ChangeLog for r2471

Revision 2471 - Directory Listing
Modified Thu Mar 7 08:45:51 2013 UTC (4 years ago) by jarioksa
merge r2458, 2462, 2468 thru 2470

r2458: restructure fitspecaccum
r2462: fix model = "asymp" in fitspecaccum
r2468: tabasco check negative data
r2469, 2470: do not use u.eiv, v.eig of the cca result

Revision 2457 - Directory Listing
Modified Fri Mar 1 17:30:51 2013 UTC (4 years ago) by jarioksa
merge small fixes to vegan 2.0-7 (2448 partly, 2449, 2452, 2453)

- print metaMDS explains clearer the stopping criteria (r2448, 2449)
- plot/text.cca gained argument axis.bp = TRUE (r2452)
- nestedtemp failed with fill < 0.38% (r2453)

Revision 2446 - Directory Listing
Modified Sun Feb 17 14:30:49 2013 UTC (4 years, 1 month ago) by jarioksa
merge 2431,3, 2435:2442: add tabasco

Revision 2445 - Directory Listing
Modified Sun Feb 17 14:05:43 2013 UTC (4 years, 1 month ago) by jarioksa
merge r2432, 2443 (edit Rd) & 2434 (wcmdscale object)

Revision 2430 - Directory Listing
Modified Mon Feb 11 12:36:04 2013 UTC (4 years, 1 month ago) by jarioksa
wrap up vegan_2.0-6 for CRAN

Revision 2429 - Directory Listing
Modified Mon Feb 11 07:36:50 2013 UTC (4 years, 1 month ago) by jarioksa
prepare to release 2.0-6

Revision 2427 - Directory Listing
Modified Mon Feb 11 07:35:39 2013 UTC (4 years, 1 month ago) by jarioksa
tweak NEWS

Revision 2426 - Directory Listing
Modified Sun Feb 10 06:49:19 2013 UTC (4 years, 1 month ago) by jarioksa
merge r2245: tweak cca.Rd

Revision 2422 - Directory Listing
Modified Fri Feb 8 08:08:20 2013 UTC (4 years, 1 month ago) by jarioksa
expand NEWS and remove linebreaks within \code{}

Revision 2421 - Directory Listing
Modified Thu Feb 7 17:55:39 2013 UTC (4 years, 1 month ago) by jarioksa
selected merges in 2389:2420. Mainly predict.cca/fitted.cca etc and doc upgrades (FAQ, cca x-refs)

Revision 2407 - Directory Listing
Modified Mon Feb 4 18:05:25 2013 UTC (4 years, 1 month ago) by jarioksa
NEWS about merge of faster protest + tweaks

Revision 2406 - Directory Listing
Modified Mon Feb 4 17:45:14 2013 UTC (4 years, 1 month ago) by jarioksa
merge r2388: faster protest, partly hand crafted

Revision 2405 - Directory Listing
Modified Mon Feb 4 17:01:55 2013 UTC (4 years, 1 month ago) by jarioksa
merge r2404: cca.Rd refers to L&L description of the RDA algorithm

Revision 2403 - Directory Listing
Modified Sun Feb 3 15:50:31 2013 UTC (4 years, 1 month ago) by jarioksa
NEWS about release 2.0-6

Revision 2402 - Directory Listing
Modified Sun Feb 3 07:28:53 2013 UTC (4 years, 1 month ago) by jarioksa
skeleton of NEWS: prepare for a February release of vegan 2.0-6

Revision 2399 - Directory Listing
Modified Thu Jan 31 13:48:28 2013 UTC (4 years, 1 month ago) by jarioksa
merge 2385,7: protest and procrustes tweaks

Revision 2397 - Directory Listing
Modified Thu Jan 31 08:19:01 2013 UTC (4 years, 1 month ago) by jarioksa
merge 2392,3: matching names in treedist() and treedive()

Revision 2395 - Directory Listing
Modified Wed Jan 30 16:42:00 2013 UTC (4 years, 1 month ago) by jarioksa
merge r2394 (partial): handle statistics in data.frame in oecosimu

Revision 2391 - Directory Listing
Modified Mon Jan 28 08:15:37 2013 UTC (4 years, 1 month ago) by jarioksa
merge r2382,3 (tweak Rd) and 2384 (new FAQ entries)

Revision 2381 - Directory Listing
Modified Sun Jan 20 16:22:22 2013 UTC (4 years, 2 months ago) by jarioksa
merge r2358: print, plot & scores for wcmdscale

Revision 2379 - Directory Listing
Modified Tue Jan 15 21:47:29 2013 UTC (4 years, 2 months ago) by gsimpson
merge r2378

Revision 2377 - Directory Listing
Modified Tue Jan 15 21:35:32 2013 UTC (4 years, 2 months ago) by gsimpson
merge r2376; forgot to apply select to kk

Revision 2375 - Directory Listing
Modified Tue Jan 15 18:26:36 2013 UTC (4 years, 2 months ago) by gsimpson
merge r2374 and document

Revision 2373 - Directory Listing
Modified Tue Jan 15 17:28:12 2013 UTC (4 years, 2 months ago) by gsimpson
merge r2732 to branch

Revision 2371 - Directory Listing
Modified Tue Jan 15 08:34:47 2013 UTC (4 years, 2 months ago) by jarioksa
merge r2367 (mantel, anosim print) aand r2369 (clamtest fixes)

Revision 2363 - Directory Listing
Modified Sat Jan 12 06:51:40 2013 UTC (4 years, 2 months ago) by jarioksa
merge r2357, 2361,2: capscale fixes and enhancements

Revision 2356 - Directory Listing
Modified Wed Jan 9 15:08:57 2013 UTC (4 years, 2 months ago) by jarioksa
merge r2349 (multipart bugfix) & r2350 (capscale species score scaling bugfix)

Revision 2346 - Directory Listing
Modified Mon Jan 7 11:42:36 2013 UTC (4 years, 2 months ago) by jarioksa
merge r2342 (unused factor levels in envit),
r2341 (doc edits) rand r2345 (new FAQs)

Revision 2339 - Directory Listing
Modified Fri Dec 14 10:10:18 2012 UTC (4 years, 3 months ago) by jarioksa
merge revs 2332 (plot nestednodf), 2334-6 (monoMDS updates)

Revision 2333 - Directory Listing
Modified Sun Dec 2 15:28:43 2012 UTC (4 years, 3 months ago) by jarioksa
merge 2329-31: msoplot() gained 'legend' and ordiR2step() gained 'R2scope'

Revision 2327 - Directory Listing
Modified Sun Oct 14 14:57:04 2012 UTC (4 years, 5 months ago) by jarioksa
reorder and tweak

Revision 2326 - Directory Listing
Modified Sun Oct 14 14:19:03 2012 UTC (4 years, 5 months ago) by jarioksa
merge improvements in dispindmorisita (r2318) and fixes in clamtest (r2139, 2323) and plot.procrustes (r2325)

Revision 2317 - Directory Listing
Modified Mon Oct 8 14:15:27 2012 UTC (4 years, 5 months ago) by jarioksa
CRAN release of vegan_2.0-5

Revision 2315 - Directory Listing
Modified Mon Oct 8 13:47:28 2012 UTC (4 years, 5 months ago) by jarioksa
tweak NEWS for the release 2.0-5

Revision 2314 - Directory Listing
Modified Sun Oct 7 16:50:53 2012 UTC (4 years, 5 months ago) by jarioksa
wrapping up for release 2.0-5

Revision 2312 - Directory Listing
Modified Sun Oct 7 10:32:22 2012 UTC (4 years, 5 months ago) by gsimpson
merge r2311 with 2.0 branch

Revision 2310 - Directory Listing
Modified Sun Oct 7 09:04:20 2012 UTC (4 years, 5 months ago) by jarioksa
merge r2309: anova.cca.Rd tweaks

Revision 2308 - Directory Listing
Modified Sat Sep 29 07:02:20 2012 UTC (4 years, 5 months ago) by jarioksa
merge -r2307: no linebreaks within \code{}

Revision 2306 - Directory Listing
Modified Sat Sep 29 06:15:34 2012 UTC (4 years, 5 months ago) by jarioksa
merge r2305: proofread [a,b]*.Rd

Revision 2304 - Directory Listing
Modified Fri Sep 28 06:41:10 2012 UTC (4 years, 5 months ago) by jarioksa
typo

Revision 2303 - Directory Listing
Modified Thu Sep 27 17:07:20 2012 UTC (4 years, 5 months ago) by jarioksa
update NEWS

Revision 2302 - Directory Listing
Modified Thu Sep 27 16:41:12 2012 UTC (4 years, 5 months ago) by jarioksa
doc upgrades and fixes (broken \links)

Revision 2301 - Directory Listing
Modified Thu Sep 27 16:37:20 2012 UTC (4 years, 5 months ago) by jarioksa
merge r2885,2291:96,98,2300 -- add predict.radfit & upgrade radfit functions

Revision 2290 - Directory Listing
Modified Tue Sep 18 17:27:31 2012 UTC (4 years, 6 months ago) by jarioksa
merge r2288,9: scoping issues that made anova.ccabyaxis, anova.ccabyterm fail in partial models

Revision 2281 - Directory Listing
Modified Mon Sep 10 12:44:12 2012 UTC (4 years, 6 months ago) by jarioksa
NEWS about mantel(..., na.rm = TRUE)

Revision 2280 - Directory Listing
Modified Mon Sep 10 12:39:31 2012 UTC (4 years, 6 months ago) by jarioksa
remove NEWS on adipart & friends: not really user-visible

Revision 2279 - Directory Listing
Modified Mon Sep 10 12:38:27 2012 UTC (4 years, 6 months ago) by jarioksa
merge 2062,2068 thru 2070: mantel[.partial] gained arg 'na.rm' plus internal code changes (r1950)

Revision 2277 - Directory Listing
Modified Mon Sep 10 12:04:53 2012 UTC (4 years, 6 months ago) by jarioksa
NEWS about vegan 2.0-5

Revision 2276 - Directory Listing
Modified Mon Sep 10 08:39:28 2012 UTC (4 years, 6 months ago) by jarioksa
mrege r2267,71: tweak documentation

Revision 2275 - Directory Listing
Modified Mon Sep 10 08:28:57 2012 UTC (4 years, 6 months ago) by jarioksa
merge vegan density methods in range r2252...2266

Revision 2274 - Directory Listing
Modified Mon Sep 10 08:00:57 2012 UTC (4 years, 6 months ago) by jarioksa
merge r2227:2235 adipart, hiersimu, multipart refactoring (formula, oecosimu)

Revision 2273 - Directory Listing
Modified Mon Sep 10 07:02:23 2012 UTC (4 years, 6 months ago) by jarioksa
merge r2260: internal streamlining of adonis

Revision 2272 - Directory Listing
Modified Mon Sep 10 06:58:43 2012 UTC (4 years, 6 months ago) by jarioksa
merge r2258: protect betadisper against changes in R-devel

Revision 2259 - Directory Listing
Modified Thu Aug 23 15:13:58 2012 UTC (4 years, 7 months ago) by jarioksa
merge r2244,9: fix vignette building in TeXLive 2012

Revision 2255 - Directory Listing
Modified Mon Aug 20 16:23:51 2012 UTC (4 years, 7 months ago) by jarioksa
Merge safe fixes in range r2225:2254

* merge r2254: stylistic in examples of Rd files.
* merge r2250: do not use paste0 in envift.Rd (fails in R 2.14). 
* merge r2246: remove dead code from cIndexKM() and R-devel CMD
        check warning.
* merge r2237 thru 2240: add labels.envfit() and "labels" arg to
        plot.envfit(). 
* merge r2225: biplot.rda 'type' fix.

Revision 2224 - Directory Listing
Modified Mon Jun 18 12:48:02 2012 UTC (4 years, 9 months ago) by jarioksa
fixes

Revision 2223 - Directory Listing
Modified Mon Jun 18 11:07:49 2012 UTC (4 years, 9 months ago) by jarioksa
vegan release 2.0-4 submitted to CRAN

Revision 2222 - Directory Listing
Modified Mon Jun 18 06:34:32 2012 UTC (4 years, 9 months ago) by jarioksa
edit NEWS

Revision 2221 - Directory Listing
Modified Sun Jun 17 18:05:31 2012 UTC (4 years, 9 months ago) by jarioksa
prepare for the release 2.0-4

Revision 2220 - Directory Listing
Modified Sun Jun 17 18:04:06 2012 UTC (4 years, 9 months ago) by jarioksa
cherrypick git rev cce42b3 from r2213: warn on empty rows in simper()

Revision 2218 - Directory Listing
Modified Thu Jun 14 09:39:26 2012 UTC (4 years, 9 months ago) by jarioksa
merge r2115: plot.envfit gained 'bg' arg

Revision 2216 - Directory Listing
Modified Thu Jun 14 08:40:25 2012 UTC (4 years, 9 months ago) by jarioksa
edit NEWS

Revision 2212 - Directory Listing
Modified Sun Jun 3 09:11:50 2012 UTC (4 years, 9 months ago) by jarioksa
merge r2006,7: check dims in predcit(<cca() result>, type = 'response'|'working', newdata=)

Revision 2211 - Directory Listing
Modified Sat Jun 2 16:52:39 2012 UTC (4 years, 9 months ago) by jarioksa
typing clumsiness in NEWS.Rd and an html version

Revision 2210 - Directory Listing
Modified Sat Jun 2 16:48:32 2012 UTC (4 years, 9 months ago) by jarioksa
merge: ordiplot3d returns envfit.convert() -- relevant fixes r2157 thru 2168, 2208

Revision 2209 - Directory Listing
Modified Sat Jun 2 10:47:59 2012 UTC (4 years, 9 months ago) by jarioksa
merge selected commits in 2172 thru 2187: metaMDS warns about too good stress

Revision 2205 - Directory Listing
Modified Mon May 28 06:58:16 2012 UTC (4 years, 9 months ago) by jarioksa
merge r2204 (betadisper.Rd), tweak NEWS

Revision 2203 - Directory Listing
Modified Sun May 27 15:15:38 2012 UTC (4 years, 9 months ago) by jarioksa
merge FAQ about data size requirements in NMDS

Revision 2198 - Directory Listing
Modified Sun May 27 14:47:03 2012 UTC (4 years, 9 months ago) by jarioksa
merge r2195 thru 2197: bias adjusted betadisper

Revision 2194 - Directory Listing
Modified Sat May 26 18:29:22 2012 UTC (4 years, 10 months ago) by gsimpson
merge r2191-2193 to 2.0 branch and document ChangeLog

Revision 2189 - Directory Listing
Modified Sat May 26 05:35:44 2012 UTC (4 years, 10 months ago) by jarioksa
merge r2178,2180: ordipointlabel gained 'select'

Revision 2188 - Directory Listing
Modified Sat May 26 05:25:38 2012 UTC (4 years, 10 months ago) by jarioksa
merge r2173-6, 2185: semitransparent colours and label position in ordihull & ordiellipse

Revision 2171 - Directory Listing
Modified Mon May 21 10:18:44 2012 UTC (4 years, 10 months ago) by jarioksa
merge r2170: bioenv accepts dissimilarities as input

Revision 2169 - Directory Listing
Modified Sat May 12 04:21:53 2012 UTC (4 years, 10 months ago) by jarioksa
merge 2156 (betadisper example), 2162, 2167 (aspect ratio in ordiplot3d)

Revision 2154 - Directory Listing
Modified Sun May 6 14:10:15 2012 UTC (4 years, 10 months ago) by jarioksa
merge r2149 & r2150: rrarefy, drarefy and monoMDS check their input

Revision 2153 - Directory Listing
Modified Sun May 6 14:05:36 2012 UTC (4 years, 10 months ago) by jarioksa
merge r2148: format references

Revision 2152 - Directory Listing
Modified Sun May 6 13:58:26 2012 UTC (4 years, 10 months ago) by jarioksa
merge r2144: do not assume constant gamma diversity in hierpart and multipart

Revision 2151 - Directory Listing
Modified Sun May 6 13:55:15 2012 UTC (4 years, 10 months ago) by jarioksa
merge r2143: formula and default method for adipart, hiersimu and multipart and easier trivial analysis of alpha, beta and gamma diversities

Revision 2140 - Directory Listing
Modified Mon Apr 23 08:16:41 2012 UTC (4 years, 11 months ago) by jarioksa
merge r2139: clamtest fix

Revision 2138 - Directory Listing
Modified Sun Apr 22 06:13:38 2012 UTC (4 years, 11 months ago) by jarioksa
merge r2132,5 (varying gamma diversity & print in adipart) and r2137 (pyrifos.Rd edit)

Revision 2134 - Directory Listing
Modified Tue Apr 17 10:57:33 2012 UTC (4 years, 11 months ago) by jarioksa
typo

Revision 2130 - Directory Listing
Modified Sun Apr 15 10:32:03 2012 UTC (4 years, 11 months ago) by jarioksa
Merge r2121 thru 2129: doc fixes (r2121,3,5), more configurable msoplot (r2127),
anova.prc(..., by=...) fix (r2128), envfit fix for unused factor levels (r2129)

Revision 2120 - Directory Listing
Modified Fri Mar 9 13:27:09 2012 UTC (5 years ago) by jarioksa
CRAN release vegan_2.0-3

Revision 2119 - Directory Listing
Modified Sat Mar 3 14:57:09 2012 UTC (5 years ago) by jarioksa
fix branches/2.0/ChangeLog

Revision 2118 - Directory Listing
Modified Sat Mar 3 11:04:35 2012 UTC (5 years ago) by jarioksa
merge r2065: nesteddisc gained argument 'niter' to set the number of iterations

Revision 2117 - Directory Listing
Modified Sat Mar 3 06:00:40 2012 UTC (5 years ago) by jarioksa
NEWS about Edi Szöcz developing simper in GitHub

Revision 2116 - Directory Listing
Modified Fri Mar 2 11:07:56 2012 UTC (5 years ago) by jarioksa
merge r2115: githug EDiLD/vegan fixes for simper() by Eduard Szöcz

Revision 2114 - Directory Listing
Modified Thu Mar 1 14:34:17 2012 UTC (5 years ago) by jarioksa
merge r2113: tweak simper.Rd formatting

Revision 2112 - Directory Listing
Modified Thu Mar 1 13:59:55 2012 UTC (5 years ago) by jarioksa
deactive simper() permutation tests in the release version

Revision 2111 - Directory Listing
Modified Tue Feb 28 15:48:55 2012 UTC (5 years ago) by jarioksa
merge r2110: fix dropping level names when the only constraint was a 2-level factor

Revision 2109 - Directory Listing
Modified Sun Feb 26 15:26:34 2012 UTC (5 years ago) by jarioksa
update NEWS for vegan 2.0-3

Revision 2108 - Directory Listing
Modified Sun Feb 26 15:07:29 2012 UTC (5 years ago) by jarioksa
merge r2100 (print.summary.simper), r2101 (monoMDS.Rd), r2103 (simper permutation), r2104 (add Cao dissimilarity=, r2105 (-pedanti fix in Cao index), r2106 (scores and vegdist doc updates and fixes)

Revision 2099 - Directory Listing
Modified Sun Feb 19 19:33:15 2012 UTC (5 years, 1 month ago) by jarioksa
merge r2097,8: add print.summary.simper and fix summary.simper

Revision 2095 - Directory Listing
Modified Sun Feb 19 06:28:59 2012 UTC (5 years, 1 month ago) by jarioksa
update NEWS

Revision 2094 - Directory Listing
Modified Sun Feb 19 06:08:25 2012 UTC (5 years, 1 month ago) by jarioksa
merge simper NAMESPACE changes r2078, 2084

Revision 2093 - Directory Listing
Modified Sat Feb 18 10:19:16 2012 UTC (5 years, 1 month ago) by jarioksa
add simper, merge r2080 (droplevels in betadisper), r2089 (scores.default fix)

Revision 2082 - Directory Listing
Modified Sat Feb 11 07:53:27 2012 UTC (5 years, 1 month ago) by jarioksa
merge r2060 (broken url), 2071,2 (indpower fix), 2079 (do not use .Internal)

Revision 2062 - Directory Listing
Modified Sat Feb 4 16:35:31 2012 UTC (5 years, 1 month ago) by jarioksa
merge r2056,2057,2061: janitorial, inconsolata fonts and adonis says she has sequential terms

Revision 2054 - Directory Listing
Modified Sun Jan 29 07:18:57 2012 UTC (5 years, 1 month ago) by jarioksa
merge r2052 (do not scale constraints in varpart) and r2053 (adjusted R2 for partial RDA)

Revision 2050 - Directory Listing
Modified Fri Jan 20 12:27:11 2012 UTC (5 years, 2 months ago) by jarioksa
2043,44,49: ordinations robust for zeroed effects

Revision 2038 - Directory Listing
Modified Sat Jan 7 07:37:01 2012 UTC (5 years, 2 months ago) by jarioksa
merge r2035-7: more robust plot.cca

Revision 2034 - Directory Listing
Modified Wed Dec 21 12:14:55 2011 UTC (5 years, 3 months ago) by jarioksa
merge r2027,28,33: tweaks in oecosimu output

Revision 2031 - Directory Listing
Modified Tue Dec 20 11:35:15 2011 UTC (5 years, 3 months ago) by jarioksa
merge r2030: resurrect old ChangeLog entries

Revision 2022 - Directory Listing
Modified Thu Dec 15 11:57:25 2011 UTC (5 years, 3 months ago) by jarioksa
merge r2018,19,21 (add nestedbetasor/jac) and r2015 (Bob O'Hara's email)

Revision 2017 - Directory Listing
Modified Tue Dec 6 17:51:55 2011 UTC (5 years, 3 months ago) by jarioksa
merge r2016: fix empty factor levels in betadisper

Revision 2014 - Directory Listing
Modified Sun Nov 20 17:02:39 2011 UTC (5 years, 4 months ago) by jarioksa
typo

Revision 2013 - Directory Listing
Modified Sun Nov 20 16:36:16 2011 UTC (5 years, 4 months ago) by jarioksa
merge rarecurve (revs 2008,9,11,12)

Revision 2010 - Directory Listing
Modified Sun Nov 20 11:21:05 2011 UTC (5 years, 4 months ago) by jarioksa
merge r2004 (metaMDS(..., noshare=0) fix) and r2007 (FAQ update)

Revision 2005 - Directory Listing
Modified Wed Nov 16 12:33:36 2011 UTC (5 years, 4 months ago) by jarioksa
release 2.0-2

Revision 2002 - Directory Listing
Modified Sun Nov 13 17:33:42 2011 UTC (5 years, 4 months ago) by jarioksa
merge r2001: explain arrow scaling in plot.envfit

Revision 2000 - Directory Listing
Modified Sun Nov 13 14:36:24 2011 UTC (5 years, 4 months ago) by gsimpson
minor typo

Revision 1999 - Directory Listing
Modified Sun Nov 13 14:34:43 2011 UTC (5 years, 4 months ago) by gsimpson
add reporter Nicholas Lewin-Koh to the adonis bug report

Revision 1997 - Directory Listing
Modified Sun Nov 13 14:22:47 2011 UTC (5 years, 4 months ago) by gsimpson
document bugs in adonis in NEWS and NEWS.html

Revision 1995 - Directory Listing
Modified Sun Nov 13 07:09:37 2011 UTC (5 years, 4 months ago) by jarioksa
wording in NEWS (but nothing about adonis yet)

Revision 1993 - Directory Listing
Modified Sat Nov 12 17:59:29 2011 UTC (5 years, 4 months ago) by gsimpson
document r1992 in ChangeLog

Revision 1992 - Directory Listing
Modified Sat Nov 12 17:57:22 2011 UTC (5 years, 4 months ago) by gsimpson
manually apply r1991 to 2.0 branch

Revision 1989 - Directory Listing
Modified Sat Nov 12 10:54:57 2011 UTC (5 years, 4 months ago) by gsimpson
manually apply r1988 to the 2.0 branch, fixing non use of transposed matrices in f.test bug in adonis

Revision 1987 - Directory Listing
Modified Sat Nov 5 14:04:04 2011 UTC (5 years, 4 months ago) by jarioksa
merge r1985: ordiarrows/segments gainded 'order.by'

Revision 1984 - Directory Listing
Modified Wed Nov 2 20:36:35 2011 UTC (5 years, 4 months ago) by jarioksa
NEWS about merge r1970: ordispider return object

Revision 1983 - Directory Listing
Modified Wed Nov 2 17:52:13 2011 UTC (5 years, 4 months ago) by jarioksa
merge r1969 (ordiplot3d doc update) r1970 (ordispider returns results) r1974,5,1980,2 (FAQ update)

Revision 1966 - Directory Listing
Modified Sun Oct 30 13:41:22 2011 UTC (5 years, 4 months ago) by jarioksa
goodness.metaMDS could also fail with isoMDS + tweaks

Revision 1965 - Directory Listing
Modified Sun Oct 30 07:07:03 2011 UTC (5 years, 4 months ago) by jarioksa
merge r1961 ('noshrink' default in metaMDSdist) and r1964 (clarify stress scaling)

Revision 1960 - Directory Listing
Modified Thu Oct 20 14:06:51 2011 UTC (5 years, 5 months ago) by jarioksa
merge r1959 (capscale zero rank fix) + mark-up in NEWS

Revision 1958 - Directory Listing
Modified Thu Oct 20 09:50:46 2011 UTC (5 years, 5 months ago) by jarioksa
CRAN release of vegan 2.0-1

Revision 1957 - Directory Listing
Modified Thu Oct 20 07:57:54 2011 UTC (5 years, 5 months ago) by jarioksa
last tweaks of wording before release 2.0-1

Revision 1956 - Directory Listing
Modified Wed Oct 19 19:06:33 2011 UTC (5 years, 5 months ago) by jarioksa
pack up for the release of vegan_2.0-1

Revision 1952 - Directory Listing
Modified Tue Oct 18 07:15:22 2011 UTC (5 years, 5 months ago) by jarioksa
polish NEWS

Revision 1948 - Directory Listing
Modified Mon Oct 10 19:18:34 2011 UTC (5 years, 5 months ago) by jarioksa
man page of merge r1945 (fisherfit.Rd)

Revision 1947 - Directory Listing
Modified Mon Oct 10 19:10:24 2011 UTC (5 years, 5 months ago) by jarioksa
merge r1939 (slackeer and faster nesteddisc), r1944 (adapt to changed 
sd() in R 2.14.0), r1945 (add plot/lines for as.preston/as.fisher)

Revision 1932 - Directory Listing
Modified Wed Oct 5 13:18:05 2011 UTC (5 years, 5 months ago) by jarioksa
merge r1927 (reset metaMDS when previous.best changed) and r1982 (permutest.cca result updating)

Revision 1926 - Directory Listing
Modified Sun Oct 2 16:43:28 2011 UTC (5 years, 5 months ago) by jarioksa
there was vegan_1.11-4, and the directory was branches/1.11-0

Revision 1925 - Directory Listing
Modified Sun Oct 2 14:17:34 2011 UTC (5 years, 5 months ago) by jarioksa
more details about revision corresponding releases

Revision 1921 - Directory Listing
Modified Sun Oct 2 06:08:15 2011 UTC (5 years, 5 months ago) by jarioksa
tell how to get a snapshot of old vegan releases

Revision 1919 - Directory Listing
Modified Sat Oct 1 05:57:38 2011 UTC (5 years, 5 months ago) by jarioksa
info on vegan-forge revisions corresponding to vegan releases

Revision 1918 - Directory Listing
Modified Sat Oct 1 05:14:21 2011 UTC (5 years, 5 months ago) by jarioksa
merge r1914,1916: doc updates

Revision 1906 - Directory Listing
Modified Wed Sep 28 13:13:37 2011 UTC (5 years, 5 months ago) by jarioksa
merge r1843: tiny speed-up in permutest.cca(..., first=TRUE)

Revision 1904 - Directory Listing
Modified Tue Sep 27 14:25:35 2011 UTC (5 years, 5 months ago) by jarioksa
proofread NEWS

Revision 1903 - Directory Listing
Modified Tue Sep 27 14:18:50 2011 UTC (5 years, 5 months ago) by jarioksa
update NEWS

Revision 1902 - Directory Listing
Modified Tue Sep 27 13:22:42 2011 UTC (5 years, 5 months ago) by jarioksa
merge clamtest to branches/2.0

Revision 1873 - Directory Listing
Modified Thu Sep 22 15:05:46 2011 UTC (5 years, 6 months ago) by jarioksa
merge r1835,72 (raupcrick), r1838,45,46 (speed-up), r1869 (meandist bug fix)

Revision 1837 - Directory Listing
Modified Sun Sep 11 18:22:12 2011 UTC (5 years, 6 months ago) by jarioksa
remove tags

Revision 1814 - Directory Listing
Modified Fri Sep 9 12:48:31 2011 UTC (5 years, 6 months ago) by jarioksa
NEWS about nestedness.c bug, identical in release and devel trees

Revision 1813 - Directory Listing
Modified Fri Sep 9 12:45:39 2011 UTC (5 years, 6 months ago) by jarioksa
merge r1800:1801 -pedantic -Wall & netstedness.c bug

Revision 1803 - Directory Listing
Modified Thu Sep 8 07:17:16 2011 UTC (5 years, 6 months ago) by jarioksa
vegan_2.0-0 was published in CRAN

Revision 1801 - Directory Listing
Modified Wed Sep 7 16:04:10 2011 UTC (5 years, 6 months ago) by jarioksa
merge r1800: Abstract to diversity-vegan in branches/2.0

Revision 1799 - Directory Listing
Modified Wed Sep 7 12:06:12 2011 UTC (5 years, 6 months ago) by jarioksa
copy pkg/vegan to branches/2.0 for the release & remove tests/

Revision 1726 - Directory Listing
Modified Wed Aug 17 11:55:10 2011 UTC (5 years, 7 months ago) by jarioksa
tag release 1.17-12

Revision 1725 - Directory Listing
Modified Wed Aug 17 11:38:31 2011 UTC (5 years, 7 months ago) by jarioksa
preparing for the release 1.17-12

Revision 1724 - Directory Listing
Modified Wed Aug 17 08:27:16 2011 UTC (5 years, 7 months ago) by jarioksa
merge 1721 thru 1723: plot.isomap & ordiplot upgrade

Revision 1720 - Directory Listing
Modified Mon Aug 15 11:35:03 2011 UTC (5 years, 7 months ago) by jarioksa
really merge r1689 like ChangeLog and NEWS claim to be have done

Revision 1719 - Directory Listing
Modified Mon Aug 15 11:28:17 2011 UTC (5 years, 7 months ago) by jarioksa
really do the adonis speed-up in the release branch

Revision 1718 - Directory Listing
Modified Mon Aug 15 10:20:19 2011 UTC (5 years, 7 months ago) by jarioksa
NEWS about 1.17-12

Revision 1714 - Directory Listing
Modified Sat Aug 13 14:20:46 2011 UTC (5 years, 7 months ago) by gsimpson
merge 1713 from trunk to branch

Revision 1710 - Directory Listing
Modified Wed Aug 10 18:05:38 2011 UTC (5 years, 7 months ago) by jarioksa
copy tolerance[.cca].R to 1.17-12

Revision 1706 - Directory Listing
Modified Tue Aug 9 23:19:20 2011 UTC (5 years, 7 months ago) by gsimpson
merge r1704 from trunk to 1.17 branch

Revision 1702 - Directory Listing
Modified Tue Aug 9 09:00:27 2011 UTC (5 years, 7 months ago) by jarioksa
merge 1699, 1700 (partial)

Revision 1697 - Directory Listing
Modified Sun Aug 7 17:32:53 2011 UTC (5 years, 7 months ago) by jarioksa
merged minor fixes since 1.17-11 (r1652 to 1695) but no monoMDS or permute dependence (see ChangeLog)

Revision 1636 - Directory Listing
Modified Thu Jun 16 09:08:15 2011 UTC (5 years, 9 months ago) by jarioksa
speed-up of adonis via simplification of f.test (in the correct place)

Revision 1635 - Directory Listing
Modified Wed Jun 15 14:20:18 2011 UTC (5 years, 9 months ago) by hankstevens
speed-up of adonis via simplification of f.test

Revision 1634 - Directory Listing
Modified Tue Jun 14 13:53:34 2011 UTC (5 years, 9 months ago) by jarioksa
release vegan_1.17-11

Revision 1633 - Directory Listing
Modified Tue Jun 14 13:27:07 2011 UTC (5 years, 9 months ago) by jarioksa
version 1.17-11 release date

Revision 1632 - Directory Listing
Modified Tue Jun 14 06:42:27 2011 UTC (5 years, 9 months ago) by jarioksa
merged r1629,30: add anova.prc

Revision 1628 - Directory Listing
Modified Sun Jun 12 19:43:42 2011 UTC (5 years, 9 months ago) by jarioksa
NEWS about 1.17-11

Revision 1627 - Directory Listing
Modified Wed Jun 8 19:45:06 2011 UTC (5 years, 9 months ago) by jarioksa
merged r1624:6: doc updates

Revision 1623 - Directory Listing
Modified Sat Jun 4 10:19:14 2011 UTC (5 years, 9 months ago) by jarioksa
merged capscale upgrade for missing 'comm' & cca/rda/capscale handling of zeroed components

Revision 1616 - Directory Listing
Modified Sun May 29 14:46:57 2011 UTC (5 years, 9 months ago) by jarioksa
merged 41588, 1609, 1614, 1615: MOStest.Rd, ordiR2step and speed.ups

Revision 1604 - Directory Listing
Modified Thu May 26 11:34:31 2011 UTC (5 years, 10 months ago) by jarioksa
merge r1600,2,3: janitorial changes in cca/rda support functions

Revision 1599 - Directory Listing
Modified Sun May 1 15:21:13 2011 UTC (5 years, 10 months ago) by jarioksa
merge r1598: doc of nobs in cca.object.Rd

Revision 1597 - Directory Listing
Modified Fri Apr 29 09:00:53 2011 UTC (5 years, 10 months ago) by jarioksa
ported nobs() to vegan_1.17-11 tree

Revision 1594 - Directory Listing
Modified Wed Apr 27 11:52:00 2011 UTC (5 years, 11 months ago) by jarioksa
tag release vegan_1.17-10

Revision 1593 - Directory Listing
Modified Wed Apr 27 11:48:18 2011 UTC (5 years, 11 months ago) by jarioksa
NEWS about release 1.17-10

Revision 1592 - Directory Listing
Modified Wed Apr 27 11:30:32 2011 UTC (5 years, 11 months ago) by jarioksa
merge 1590,1: 2.13.0 fix and 2.14.0 (under devel) warning

Revision 1587 - Directory Listing
Modified Mon Apr 11 15:55:48 2011 UTC (5 years, 11 months ago) by jarioksa
merge example speed-ups to branches/1.17

Revision 1585 - Directory Listing
Modified Sun Apr 10 08:48:20 2011 UTC (5 years, 11 months ago) by jarioksa
merge r1555 (vegdist.c #include'd headers)

Revision 1584 - Directory Listing
Modified Sun Apr 10 06:14:54 2011 UTC (5 years, 11 months ago) by jarioksa
open 1.17-10 branch, port r1564 (def in ordering.f), r1570 (na.rm in metaMDSrotate)

Revision 1562 - Directory Listing
Modified Thu Mar 31 13:25:10 2011 UTC (5 years, 11 months ago) by jarioksa
tag release vegan_1.17-9

Revision 1561 - Directory Listing
Modified Thu Mar 31 13:22:53 2011 UTC (5 years, 11 months ago) by jarioksa
preparing release 1.17-9

Revision 1560 - Directory Listing
Modified Wed Mar 30 13:48:09 2011 UTC (5 years, 11 months ago) by gsimpson
merge r1559 to 1.17 branch - minor tweak to plot code

Revision 1556 - Directory Listing
Modified Mon Mar 28 18:44:09 2011 UTC (5 years, 11 months ago) by gsimpson
Tweaks to language for release

Revision 1554 - Directory Listing
Modified Sat Mar 26 15:52:36 2011 UTC (6 years ago) by jarioksa
merge r 1550:1552: ordilabel gained 'xpd' and anova.cca(..., by = 'axis') fix

Revision 1553 - Directory Listing
Modified Wed Mar 23 17:51:28 2011 UTC (6 years ago) by jarioksa
NEWS about vegan_1.17-9

Revision 1549 - Directory Listing
Modified Sat Mar 19 19:31:32 2011 UTC (6 years ago) by jarioksa
merge revs 1530 thru 1548:
- ordisurf got formula method, new plot method, and gained arguments to control
  gam fitting
- metaMDSrotate can handle >2D configuration
- metaMDSiter got more flexible 'previous.best'
- typo in vegdist.Rd

Revision 1536 - Directory Listing
Modified Thu Mar 10 12:01:00 2011 UTC (6 years ago) by jarioksa
merge r1532: stop message in d/r/rarefy

Revision 1530 - Directory Listing
Modified Wed Mar 9 14:28:01 2011 UTC (6 years ago) by jarioksa
merge r1499, 1521 thru 1529 to release branches/

Revision 1520 - Directory Listing
Modified Wed Mar 2 12:39:08 2011 UTC (6 years ago) by jarioksa
tag release vegan_1.17-8

Revision 1519 - Directory Listing
Modified Wed Mar 2 12:38:06 2011 UTC (6 years ago) by jarioksa
pack up for the release 1.17-8

Revision 1518 - Directory Listing
Modified Tue Mar 1 17:05:35 2011 UTC (6 years ago) by jarioksa
NEWS about release 1.17-8

Revision 1516 - Directory Listing
Modified Mon Feb 28 15:53:47 2011 UTC (6 years ago) by jarioksa
merge r1510:1515 - Rd fixes and updates

Revision 1509 - Directory Listing
Modified Fri Feb 25 14:10:45 2011 UTC (6 years, 1 month ago) by jarioksa
merge r1500,4: handling zero eigenvalues in decorana

Revision 1502 - Directory Listing
Modified Sun Feb 20 17:34:08 2011 UTC (6 years, 1 month ago) by jarioksa
merge 1501: as.preston tiesplit bug

Revision 1498 - Directory Listing
Modified Sun Feb 20 10:51:10 2011 UTC (6 years, 1 month ago) by jarioksa
merged r1494-1497: no return, procrustes input check & FAQ updates

Revision 1493 - Directory Listing
Modified Wed Feb 16 10:50:50 2011 UTC (6 years, 1 month ago) by jarioksa
tag release vegan_1.17-7

Revision 1492 - Directory Listing
Modified Wed Feb 16 10:47:38 2011 UTC (6 years, 1 month ago) by jarioksa
packing up for the release 1.17-7

Revision 1491 - Directory Listing
Modified Tue Feb 15 15:54:41 2011 UTC (6 years, 1 month ago) by jarioksa
merge r1489: nestednodf with 'weighted = FALSE'

Revision 1488 - Directory Listing
Modified Mon Feb 14 17:09:42 2011 UTC (6 years, 1 month ago) by jarioksa
merge 1486: R CMD check fixes

Revision 1485 - Directory Listing
Modified Mon Feb 14 07:55:06 2011 UTC (6 years, 1 month ago) by jarioksa
updated NEWS

Revision 1484 - Directory Listing
Modified Mon Feb 14 07:34:42 2011 UTC (6 years, 1 month ago) by jarioksa
merge 1482,3: eigenvals of dudi and labdsv

Revision 1479 - Directory Listing
Modified Sun Feb 6 13:13:26 2011 UTC (6 years, 1 month ago) by jarioksa
NEWS about release 1.17-7

Revision 1478 - Directory Listing
Modified Sat Feb 5 18:15:08 2011 UTC (6 years, 1 month ago) by jarioksa
merge r1471 to 1475

Revision 1477 - Directory Listing
Modified Wed Feb 2 17:05:13 2011 UTC (6 years, 1 month ago) by jarioksa
merge r1476: zip data

Revision 1470 - Directory Listing
Modified Sun Jan 30 07:37:51 2011 UTC (6 years, 1 month ago) by jarioksa
merge r1469: typos in docs

Revision 1468 - Directory Listing
Modified Thu Jan 20 17:29:52 2011 UTC (6 years, 2 months ago) by jarioksa
merged rev 1444 to 1467 to branches/1.17

Revision 1450 - Directory Listing
Modified Mon Jan 10 15:34:11 2011 UTC (6 years, 2 months ago) by jarioksa
maintainer mode changes after the release 1.17-6

Revision 1448 - Directory Listing
Modified Mon Jan 10 09:11:44 2011 UTC (6 years, 2 months ago) by jarioksa
tagging vegan_1.17-6 release

Revision 1447 - Directory Listing
Modified Mon Jan 10 09:02:30 2011 UTC (6 years, 2 months ago) by jarioksa
packing up for the release 1.17-6

Revision 1444 - Directory Listing
Modified Sun Jan 9 14:19:12 2011 UTC (6 years, 2 months ago) by jarioksa
emacs, emacs, please save the changes...

Revision 1443 - Directory Listing
Modified Sun Jan 9 14:18:32 2011 UTC (6 years, 2 months ago) by jarioksa
NEWS about release 1.17-6

Revision 1442 - Directory Listing
Modified Sat Jan 8 07:54:53 2011 UTC (6 years, 2 months ago) by jarioksa
merge vegan/pkg to branches/1.17 (r1428 to 1441)

Revision 1427 - Directory Listing
Modified Sat Dec 18 19:50:03 2010 UTC (6 years, 3 months ago) by jarioksa
maintainer mode changes with the release of vegan 1.17-5

Revision 1426 - Directory Listing
Modified Fri Dec 17 13:06:00 2010 UTC (6 years, 3 months ago) by jarioksa
tagging vegan_1.17-5 release

Revision 1425 - Directory Listing
Modified Fri Dec 17 13:03:40 2010 UTC (6 years, 3 months ago) by jarioksa
final touch for the release

Revision 1424 - Directory Listing
Modified Wed Dec 15 14:52:19 2010 UTC (6 years, 3 months ago) by jarioksa
merge 1423 to branches: final fix for the release?

Revision 1422 - Directory Listing
Modified Tue Dec 14 14:32:13 2010 UTC (6 years, 3 months ago) by jarioksa
preparations for release 1.17-5 scheduled now for 17 Dec 2010 (mantel.correlog needs testing)

Revision 1421 - Directory Listing
Modified Tue Dec 14 07:09:53 2010 UTC (6 years, 3 months ago) by jarioksa
merge r1419 (typos & spelling)

Revision 1419 - Directory Listing
Modified Mon Dec 13 21:07:33 2010 UTC (6 years, 3 months ago) by jarioksa
merge r1418: update literature reference

Revision 1417 - Directory Listing
Modified Mon Dec 13 19:37:39 2010 UTC (6 years, 3 months ago) by jarioksa
copied vegan-package.Rd to branches/1.17

Revision 1416 - Directory Listing
Modified Mon Dec 13 17:18:06 2010 UTC (6 years, 3 months ago) by jarioksa
merge r1415 (Gower legend)

Revision 1414 - Directory Listing
Modified Mon Dec 13 13:47:12 2010 UTC (6 years, 3 months ago) by jarioksa
typos

Revision 1413 - Directory Listing
Modified Mon Dec 13 13:45:41 2010 UTC (6 years, 3 months ago) by jarioksa
edit release NEWS

Revision 1412 - Directory Listing
Modified Mon Dec 13 13:13:52 2010 UTC (6 years, 3 months ago) by jarioksa
merge r1407: diffable & updated contribdiv.Rd

Revision 1406 - Directory Listing
Modified Thu Dec 9 20:44:58 2010 UTC (6 years, 3 months ago) by jarioksa
not now & other edits

Revision 1405 - Directory Listing
Modified Thu Dec 9 14:08:15 2010 UTC (6 years, 3 months ago) by jarioksa
decision-vegan.Rnw learned sipoo.rda row names

Revision 1404 - Directory Listing
Modified Thu Dec 9 13:36:53 2010 UTC (6 years, 3 months ago) by jarioksa
more diffable permatfull.Rd

Revision 1401 - Directory Listing
Modified Thu Dec 9 10:02:16 2010 UTC (6 years, 3 months ago) by jarioksa
Sipoo islands got abbreviated names

Revision 1399 - Directory Listing
Modified Thu Dec 9 09:54:11 2010 UTC (6 years, 3 months ago) by jarioksa
item col was added twice (r1387 & r1397)

Revision 1398 - Directory Listing
Modified Thu Dec 9 09:31:18 2010 UTC (6 years, 3 months ago) by jarioksa
NEWS about release 1.17-5

Revision 1397 - Directory Listing
Modified Wed Dec 8 20:30:38 2010 UTC (6 years, 3 months ago) by jarioksa
merge r1312,3 doc changes for ordilabel text colour (ordilabel.R merged earlier)

Revision 1396 - Directory Listing
Modified Wed Dec 8 19:10:34 2010 UTC (6 years, 3 months ago) by jarioksa
merge r1284, 1324 fixes and updates in ordistep

Revision 1395 - Directory Listing
Modified Wed Dec 8 18:10:29 2010 UTC (6 years, 3 months ago) by jarioksa
cp ordiR2step to branches/1.17

Revision 1392 - Directory Listing
Modified Fri Dec 3 18:13:21 2010 UTC (6 years, 3 months ago) by gsimpson
merge r1390 to 1.17 branch and document change in ChangeLog

Revision 1389 - Directory Listing
Modified Thu Dec 2 09:51:02 2010 UTC (6 years, 3 months ago) by jarioksa
merge r1281: df in anova.ccanull

Revision 1388 - Directory Listing
Modified Thu Dec 2 09:38:50 2010 UTC (6 years, 3 months ago) by jarioksa
merge most things up to r1385 except fitspecaccum & friends and ordiR2step to branches/1.17

Revision 1387 - Directory Listing
Modified Wed Dec 1 19:46:21 2010 UTC (6 years, 3 months ago) by jarioksa
merge r1301 through 1331 to branches/1.17

Revision 1386 - Directory Listing
Modified Wed Dec 1 17:16:23 2010 UTC (6 years, 3 months ago) by jarioksa
merge r1270:1300 to branches/1.17

Revision 1374 - Directory Listing
Modified Wed Nov 17 18:02:13 2010 UTC (6 years, 4 months ago) by jarioksa
starting preparations for the release

Revision 1269 - Directory Listing
Modified Fri Aug 20 06:57:46 2010 UTC (6 years, 7 months ago) by jarioksa
tagged vegan_1.17-4 release

Revision 1268 - Directory Listing
Modified Fri Aug 20 06:51:12 2010 UTC (6 years, 7 months ago) by jarioksa
create tags directory for the release

Revision 1267 - Directory Listing
Modified Fri Aug 20 06:41:45 2010 UTC (6 years, 7 months ago) by jarioksa
final edits for the release of 1.17-4

Revision 1266 - Directory Listing
Modified Fri Aug 20 06:36:22 2010 UTC (6 years, 7 months ago) by jarioksa
add CRAN as the primary URL of the release version

Revision 1265 - Directory Listing
Modified Thu Aug 19 12:13:41 2010 UTC (6 years, 7 months ago) by jarioksa
preparing for the release 1.17-4 within 24 hours...

Revision 1264 - Directory Listing
Modified Thu Aug 19 12:07:31 2010 UTC (6 years, 7 months ago) by jarioksa
merge r1263 to branches/1.17

Revision 1262 - Directory Listing
Modified Tue Aug 17 12:58:09 2010 UTC (6 years, 7 months ago) by jarioksa
NEWS about release 1.17-4

Revision 1261 - Directory Listing
Modified Tue Aug 17 12:57:33 2010 UTC (6 years, 7 months ago) by jarioksa
pedantic fix

Revision 1260 - Directory Listing
Modified Tue Aug 17 12:11:04 2010 UTC (6 years, 7 months ago) by jarioksa
merge rev1235:1259 (+ old pieces) for release 1.17-4

Revision 1234 - Directory Listing
Modified Wed Jun 16 13:34:45 2010 UTC (6 years, 9 months ago) by jarioksa
preparing for the release 1.17-3

Revision 1233 - Directory Listing
Modified Wed Jun 16 06:24:15 2010 UTC (6 years, 9 months ago) by gsimpson
links to ?permutations

Revision 1232 - Directory Listing
Modified Tue Jun 15 22:13:19 2010 UTC (6 years, 9 months ago) by gsimpson
document changes in r1231

Revision 1231 - Directory Listing
Modified Tue Jun 15 22:12:45 2010 UTC (6 years, 9 months ago) by gsimpson
copy permutations.Rd from devel (r1229 and r1230)

Revision 1228 - Directory Listing
Modified Sun Jun 13 06:32:37 2010 UTC (6 years, 9 months ago) by jarioksa
add treedist.R to the release branch (and hints of release date)

Revision 1227 - Directory Listing
Modified Sun Jun 13 05:49:24 2010 UTC (6 years, 9 months ago) by jarioksa
NEWS about the release 1.17-3

Revision 1226 - Directory Listing
Modified Fri Jun 11 07:33:28 2010 UTC (6 years, 9 months ago) by jarioksa
faster check & example()

Revision 1225 - Directory Listing
Modified Thu Jun 10 06:17:32 2010 UTC (6 years, 9 months ago) by jarioksa
merge some (but not all) check time speed-up

Revision 1223 - Directory Listing
Modified Wed Jun 9 07:31:44 2010 UTC (6 years, 9 months ago) by jarioksa
utf-8 fix

Revision 1222 - Directory Listing
Modified Mon Jun 7 06:52:35 2010 UTC (6 years, 9 months ago) by jarioksa
merge r1186: use 999 permutations instead of 0 in envfit

Revision 1221 - Directory Listing
Modified Sun Jun 6 16:21:35 2010 UTC (6 years, 9 months ago) by jarioksa
merge r1175: code clean-up

Revision 1220 - Directory Listing
Modified Sun Jun 6 16:17:43 2010 UTC (6 years, 9 months ago) by jarioksa
merge to 1.17-3: 'labels' arg in ordiarrows, ordisegments & ordispider

Revision 1219 - Directory Listing
Modified Sun Jun 6 15:44:09 2010 UTC (6 years, 9 months ago) by jarioksa
merge small fixes in tsallis & postMDS

Revision 1218 - Directory Listing
Modified Sun Jun 6 09:13:01 2010 UTC (6 years, 9 months ago) by jarioksa
merge fixes and major enhancements to 1.17-3

Revision 1217 - Directory Listing
Modified Thu Jun 3 18:29:56 2010 UTC (6 years, 9 months ago) by gsimpson
bump branch version 1.17-3, preempting a release?

Revision 1216 - Directory Listing
Modified Thu Jun 3 18:27:18 2010 UTC (6 years, 9 months ago) by gsimpson
merge r1214 to the 1.17 branch and document

Revision 1173 - Directory Listing
Modified Mon Mar 8 15:56:13 2010 UTC (7 years ago) by jarioksa
packing up for the release 1.17-2

Revision 1172 - Directory Listing
Modified Mon Mar 8 08:40:06 2010 UTC (7 years ago) by jarioksa
NEWS about release 1.17-2

Revision 1171 - Directory Listing
Modified Mon Mar 8 08:28:25 2010 UTC (7 years ago) by jarioksa
merge 1170 to branches/1.17 (screeplot is generic)

Revision 1169 - Directory Listing
Modified Mon Mar 8 08:16:44 2010 UTC (7 years ago) by jarioksa
screeplot.*.R really honour 'pch' for brokenstick line

Revision 1168 - Directory Listing
Modified Thu Mar 4 16:00:04 2010 UTC (7 years ago) by jarioksa
merge r1131 & 1165: add 'anova' item to the result object

Revision 1167 - Directory Listing
Modified Thu Mar 4 15:56:36 2010 UTC (7 years ago) by jarioksa
merged r1164: densityplot.oecosimu warnings with one panel lattice

Revision 1166 - Directory Listing
Modified Thu Mar 4 15:53:39 2010 UTC (7 years ago) by jarioksa
merged 1158, 1159 & 1163: nesteddisc tie fix & speed-up

Revision 1162 - Directory Listing
Modified Wed Mar 3 08:20:26 2010 UTC (7 years ago) by gsimpson
ChangeLog documenting r1160 and r1161 merging changes to screeplot from trunk

Revision 1161 - Directory Listing
Modified Wed Mar 3 08:18:42 2010 UTC (7 years ago) by gsimpson
manual merge r1139 to 1.17-x branch

Revision 1160 - Directory Listing
Modified Wed Mar 3 08:11:50 2010 UTC (7 years ago) by gsimpson
merge r1137 to 1.17.x branch

Revision 1144 - Directory Listing
Modified Fri Feb 26 21:33:50 2010 UTC (7 years ago) by gsimpson
Bump 1.17-x version to 1.17-2

Revision 1143 - Directory Listing
Modified Fri Feb 26 21:32:54 2010 UTC (7 years ago) by gsimpson
ChangeLog for r1142

Revision 1142 - Directory Listing
Modified Fri Feb 26 21:32:04 2010 UTC (7 years ago) by gsimpson
merge r1140 to 1.17-x branch

Revision 1136 - Directory Listing
Modified Fri Feb 19 06:44:08 2010 UTC (7 years, 1 month ago) by jarioksa
forgot NEWS about predict.cca/rda and simulate.rda/cca, so tell them in the next release...

Revision 1135 - Directory Listing
Modified Thu Feb 18 07:06:09 2010 UTC (7 years, 1 month ago) by jarioksa
fix up for the release of 1.17-1

Revision 1134 - Directory Listing
Modified Thu Feb 18 06:54:55 2010 UTC (7 years, 1 month ago) by jarioksa
update release FAQ for required packages

Revision 1132 - Directory Listing
Modified Wed Feb 17 13:32:07 2010 UTC (7 years, 1 month ago) by jarioksa
copied multipart() to release branches/1.17

Revision 1129 - Directory Listing
Modified Tue Feb 16 07:45:59 2010 UTC (7 years, 1 month ago) by jarioksa
NEWS about upcoming 1.17-1

Revision 1128 - Directory Listing
Modified Tue Feb 16 07:17:19 2010 UTC (7 years, 1 month ago) by jarioksa
merge r1102: do not require 'vegan' in 'vegan'

Revision 1127 - Directory Listing
Modified Tue Feb 16 06:57:21 2010 UTC (7 years, 1 month ago) by jarioksa
merged r1118-1120, 1122: predict.cca/rda & simulate.rda/cca upgrades

Revision 1126 - Directory Listing
Modified Tue Feb 16 06:47:38 2010 UTC (7 years, 1 month ago) by jarioksa
merged fixes for CCCorA (r1123) and envfit (r1124) to branches/1.17

Revision 1116 - Directory Listing
Modified Mon Jan 11 15:01:01 2010 UTC (7 years, 2 months ago) by jarioksa
wrapping up for the CRAN release 1.17-0

Revision 1115 - Directory Listing
Modified Mon Jan 11 14:47:30 2010 UTC (7 years, 2 months ago) by jarioksa
merge betadisper updates (r1096, r1114) to branches/1.17

Revision 1113 - Directory Listing
Modified Mon Jan 11 08:44:19 2010 UTC (7 years, 2 months ago) by jarioksa
more visible NEWS on quantitative null models in spirit of https://stat.ethz.ch/pipermail/r-sig-ecology/2010-January/001004.html

Revision 1112 - Directory Listing
Modified Sun Jan 10 14:37:42 2010 UTC (7 years, 2 months ago) by jarioksa
Dave Roberts renamed labdsv::duleg to labdsv::indval (on Pierre Legendre's request)

Revision 1111 - Directory Listing
Modified Fri Jan 8 18:17:00 2010 UTC (7 years, 2 months ago) by jarioksa
remove multipart.Rd after removing multpart.R

Revision 1110 - Directory Listing
Modified Fri Jan 8 16:44:52 2010 UTC (7 years, 2 months ago) by psolymos
multipart removed

Revision 1106 - Directory Listing
Modified Thu Jan 7 09:16:30 2010 UTC (7 years, 2 months ago) by jarioksa
removed MOStest from the release branches/1.17

Revision 1105 - Directory Listing
Modified Wed Jan 6 15:54:21 2010 UTC (7 years, 2 months ago) by jarioksa
documented na.action in cca.object.Rd

Revision 1104 - Directory Listing
Modified Tue Jan 5 12:21:36 2010 UTC (7 years, 2 months ago) by jarioksa
more NEWS for release 1.17-0

Revision 1093 - Directory Listing
Modified Mon Jan 4 09:20:31 2010 UTC (7 years, 2 months ago) by jarioksa
NEWS about new team member and new dependence

Revision 1091 - Directory Listing
Modified Mon Jan 4 09:17:08 2010 UTC (7 years, 2 months ago) by jarioksa
edited NEWS for release 1.17-0

Revision 1090 - Directory Listing
Modified Sat Jan 2 15:25:06 2010 UTC (7 years, 2 months ago) by jarioksa
removed treedist() from branches/1.17

Revision 1089 - Directory Listing
Modified Sat Jan 2 15:18:54 2010 UTC (7 years, 2 months ago) by jarioksa
update NEWS in branches/1.17

Revision 1088 - Directory Listing
Modified Sat Jan 2 14:01:15 2010 UTC (7 years, 2 months ago) by jarioksa
opening branches/1.17 for a new release

Revision 994 - Directory Listing
Modified Mon Sep 7 07:32:11 2009 UTC (7 years, 6 months ago) by jarioksa
merging CRAN 2.10 fixes to branches/1.15 to pass the release inspection (r889, 891)

Revision 971 - Directory Listing
Modified Tue Sep 1 07:36:28 2009 UTC (7 years, 6 months ago) by jarioksa
last tweaks for the release of 1.15-4

Revision 970 - Directory Listing
Modified Tue Sep 1 06:33:03 2009 UTC (7 years, 6 months ago) by jarioksa
packing up 1.15-4 for the release to CRAN

Revision 964 - Directory Listing
Modified Thu Aug 27 13:30:53 2009 UTC (7 years, 6 months ago) by jarioksa
merge anosim to branches/1.15

Revision 962 - Directory Listing
Modified Thu Aug 27 09:04:34 2009 UTC (7 years, 7 months ago) by jarioksa
NEWS for release candidate 1.15-4

Revision 961 - Directory Listing
Modified Thu Aug 27 08:23:06 2009 UTC (7 years, 7 months ago) by jarioksa
update ChangeLog

Revision 960 - Directory Listing
Modified Thu Aug 27 08:17:12 2009 UTC (7 years, 7 months ago) by jarioksa
merged rev 602: either row or col names can be turned off in plot.nestedtemp

Revision 959 - Directory Listing
Modified Thu Aug 27 08:10:44 2009 UTC (7 years, 7 months ago) by jarioksa
merged rev 779 to branches/1.15: minor fix in formatting

Revision 957 - Directory Listing
Modified Wed Aug 26 15:58:07 2009 UTC (7 years, 7 months ago) by jarioksa
merged summary for ordihull & ordiellipse into branches/115

Revision 955 - Directory Listing
Modified Wed Aug 26 15:23:43 2009 UTC (7 years, 7 months ago) by jarioksa
specpool.Rd: omitted latest fixes from the previous commit

Revision 954 - Directory Listing
Modified Wed Aug 26 15:17:42 2009 UTC (7 years, 7 months ago) by jarioksa
merge poolaccum & estaccumR to branches/1.15 (r913 to 923)

Revision 953 - Directory Listing
Modified Wed Aug 26 14:58:43 2009 UTC (7 years, 7 months ago) by jarioksa
keyword datagen added: merge r685

Revision 952 - Directory Listing
Modified Wed Aug 26 14:49:56 2009 UTC (7 years, 7 months ago) by jarioksa
merged RsquareAdj methods to branches/1.15

Revision 951 - Directory Listing
Modified Tue Aug 25 19:18:03 2009 UTC (7 years, 7 months ago) by jarioksa
fix examples of mantel.correlog

Revision 950 - Directory Listing
Modified Tue Aug 25 18:41:00 2009 UTC (7 years, 7 months ago) by jarioksa
copied mantel.correlog to branches/1.15

Revision 949 - Directory Listing
Modified Tue Aug 25 18:24:54 2009 UTC (7 years, 7 months ago) by jarioksa
copied indpower to branches/1.15

Revision 941 - Directory Listing
Modified Sun Aug 23 06:25:16 2009 UTC (7 years, 7 months ago) by jarioksa
copied radlattice.R to branches (r551, 553)

Revision 940 - Directory Listing
Modified Sun Aug 23 05:56:18 2009 UTC (7 years, 7 months ago) by jarioksa
merged panel.ordiarrows: r813, 814, 835, 879

Revision 937 - Directory Listing
Modified Sat Aug 22 05:42:42 2009 UTC (7 years, 7 months ago) by jarioksa
save merges between r902 and r931, and release candidate does not depend on the ellipse package

Revision 935 - Directory Listing
Modified Fri Aug 21 06:35:29 2009 UTC (7 years, 7 months ago) by jarioksa
merge r934 to branches/1.15 (stray code removal)

Revision 933 - Directory Listing
Modified Thu Aug 20 17:57:50 2009 UTC (7 years, 7 months ago) by jarioksa
merge r874 to r891 to branches/1.15

Revision 878 - Directory Listing
Modified Sun Jun 28 09:34:43 2009 UTC (7 years, 8 months ago) by gsimpson
merge r877 (tidy) to 1.15 branch

Revision 876 - Directory Listing
Modified Sun Jun 28 09:32:35 2009 UTC (7 years, 8 months ago) by gsimpson
merge r875 to 1.15 branch

Revision 873 - Directory Listing
Modified Wed Jun 17 08:17:22 2009 UTC (7 years, 9 months ago) by jarioksa
version numbers and dates for release 1.15-3

Revision 872 - Directory Listing
Modified Wed Jun 17 08:12:05 2009 UTC (7 years, 9 months ago) by jarioksa
merged FAQ update on negative eigenvalues in capscale (r859)

Revision 871 - Directory Listing
Modified Fri Jun 12 10:41:38 2009 UTC (7 years, 9 months ago) by jarioksa
1.15/ChangeLog about r870

Revision 870 - Directory Listing
Modified Fri Jun 12 10:39:07 2009 UTC (7 years, 9 months ago) by jarioksa
merged 866-868 to branches/1.15: changed the way capscale displays negative inertia, fixes scaling of 0..1 range indices

Revision 865 - Directory Listing
Modified Thu Jun 11 16:27:09 2009 UTC (7 years, 9 months ago) by jarioksa
NEWS about coming 1.15-3 release

Revision 864 - Directory Listing
Modified Wed Jun 10 20:12:07 2009 UTC (7 years, 9 months ago) by jarioksa
merged fixes on capscale handling of negative eigenvalues to branches/1.15

Revision 857 - Directory Listing
Modified Tue Jun 9 07:50:12 2009 UTC (7 years, 9 months ago) by jarioksa
removed simulate.rda from branches/1.15

Revision 856 - Directory Listing
Modified Mon Jun 8 19:39:07 2009 UTC (7 years, 9 months ago) by jarioksa
merged r850 (wcmdscale zero eigenvalue fix) to branches/1.15

Revision 853 - Directory Listing
Modified Tue Jun 2 16:57:07 2009 UTC (7 years, 9 months ago) by jarioksa
copied simulate.rda and eigenvals and merged r845 (summary.cca uses eigenvals) to branches/1.15

Revision 852 - Directory Listing
Modified Tue Jun 2 16:35:56 2009 UTC (7 years, 9 months ago) by jarioksa
merged 818,820 (tsallis gained arg hill), 775, 789 (meandist), r796,801 (ordisurf can do linear and quadratic surfaces) to branches/1.15

Revision 848 - Directory Listing
Modified Mon Jun 1 09:23:02 2009 UTC (7 years, 9 months ago) by jarioksa
forgot to merge Gav's r834 that started all this putting obs to permutations fixes (protest)

Revision 847 - Directory Listing
Modified Mon Jun 1 08:36:37 2009 UTC (7 years, 9 months ago) by jarioksa
put observed statistic among permutations: merged rev 837:842 and 845 to branches/1.15

Revision 833 - Directory Listing
Modified Thu May 28 13:09:38 2009 UTC (7 years, 9 months ago) by jarioksa
merged some fixes between r809 andr832 to branches for possible 1.15-3 release

Revision 808 - Directory Listing
Modified Wed Apr 15 12:36:02 2009 UTC (7 years, 11 months ago) by jarioksa
admin changes to release 1.15-2

Revision 807 - Directory Listing
Modified Wed Apr 15 07:02:10 2009 UTC (7 years, 11 months ago) by jarioksa
spantree.Rd examples use type = 't'

Revision 806 - Directory Listing
Modified Wed Apr 15 06:55:10 2009 UTC (7 years, 11 months ago) by jarioksa
cleanup for CRAN release vegan_1.15-2

Revision 805 - Directory Listing
Modified Wed Apr 15 06:48:20 2009 UTC (7 years, 11 months ago) by jarioksa
nestedtemp.Rd tells that bipartite::nestedness ports BINMATNEST

Revision 804 - Directory Listing
Modified Tue Apr 14 19:21:18 2009 UTC (7 years, 11 months ago) by jarioksa
merged r800 (adonis uses less memory) and r802 (enhanced example in adonis.Rd)

Revision 799 - Directory Listing
Modified Wed Apr 8 11:37:10 2009 UTC (7 years, 11 months ago) by jarioksa
merged r600: Oribatids got names

Revision 798 - Directory Listing
Modified Tue Apr 7 06:05:49 2009 UTC (7 years, 11 months ago) by jarioksa
NEWS about upcoming release 1.15-2

Revision 797 - Directory Listing
Modified Tue Apr 7 04:46:41 2009 UTC (7 years, 11 months ago) by jarioksa
merged nestednodf to branches/1.15

Revision 795 - Directory Listing
Modified Sun Apr 5 14:56:28 2009 UTC (7 years, 11 months ago) by jarioksa
merge r788 to branches/1.15: add dots to decostand

Revision 794 - Directory Listing
Modified Sun Apr 5 14:50:12 2009 UTC (7 years, 11 months ago) by jarioksa
merged r793 to branches/1.15 (canonical mark-up in Rd files)

Revision 792 - Directory Listing
Modified Sun Apr 5 12:58:04 2009 UTC (7 years, 11 months ago) by gsimpson
merge r790 to 1.15 branch: missing values handling in betadisper

Revision 787 - Directory Listing
Modified Sat Apr 4 09:20:59 2009 UTC (7 years, 11 months ago) by gsimpson
merge r786 to 1.15 branch and update both changelogs

Revision 785 - Directory Listing
Modified Fri Apr 3 15:59:11 2009 UTC (7 years, 11 months ago) by gsimpson
merge r784 to 1.15 branch

Revision 783 - Directory Listing
Modified Fri Apr 3 15:24:56 2009 UTC (7 years, 11 months ago) by gsimpson
merge r781 to 1.15 branch and updated 1.15 ChangeLog

Revision 778 - Directory Listing
Modified Thu Apr 2 17:39:56 2009 UTC (7 years, 11 months ago) by jarioksa
removing remnants of plot.contribdiv from branches/1.15 docs

Revision 777 - Directory Listing
Modified Thu Apr 2 16:51:33 2009 UTC (7 years, 11 months ago) by psolymos
plot.contribdiv removed from docs

Revision 776 - Directory Listing
Modified Thu Apr 2 16:46:27 2009 UTC (7 years, 11 months ago) by psolymos
contribdiv added to branch 1.15 (adipart links removed)

Revision 774 - Directory Listing
Modified Wed Apr 1 11:47:59 2009 UTC (7 years, 11 months ago) by jarioksa
mrpp upgrade merged to branches/1.15 (rev 755 to 760)

Revision 773 - Directory Listing
Modified Tue Mar 31 16:46:53 2009 UTC (7 years, 11 months ago) by jarioksa
better handling of halfchange scaling merged to branches/1.15 (rev 762, 763, 765)

Revision 772 - Directory Listing
Modified Tue Mar 31 16:33:49 2009 UTC (7 years, 11 months ago) by jarioksa
updated ordisurf in branches/1.15: grid item and 'bubble' argument

Revision 771 - Directory Listing
Modified Mon Mar 30 18:29:17 2009 UTC (7 years, 11 months ago) by jarioksa
Miquel de Caceres's new beals code merged to branches/1.15

Revision 770 - Directory Listing
Modified Mon Mar 30 16:42:02 2009 UTC (7 years, 11 months ago) by jarioksa
copied dispindmorisita from pkg/ to branches/1.15

Revision 768 - Directory Listing
Modified Mon Mar 30 16:15:43 2009 UTC (7 years, 11 months ago) by jarioksa
copied kendall.global etc to branches/1.15

Revision 764 - Directory Listing
Modified Sun Mar 29 07:02:24 2009 UTC (7 years, 11 months ago) by jarioksa
merged some safe-looking changes to branches/1.15: r518, r538-540, r608, r676

Revision 761 - Directory Listing
Modified Thu Mar 26 09:52:59 2009 UTC (8 years ago) by jarioksa
merged r689 (add text.procrustes) and r674 (metaMDSdist behavious when set noshare=0)

Revision 754 - Directory Listing
Modified Mon Mar 23 11:04:15 2009 UTC (8 years ago) by jarioksa
merged r753: warning on automatic scaling of arrows in plot.envfit

Revision 752 - Directory Listing
Modified Sun Mar 22 07:11:03 2009 UTC (8 years ago) by jarioksa
the rest of the fixes for add1.cca.Rd

Revision 751 - Directory Listing
Modified Sun Mar 22 07:09:09 2009 UTC (8 years ago) by jarioksa
emacs ate my updates in add1.cca.Rd

Revision 737 - Directory Listing
Modified Wed Mar 11 17:24:00 2009 UTC (8 years ago) by jarioksa
merged r735 & 736 to the 1.15-2: stepacross in metaMDS fixes for Euclidean etc. distances

Revision 734 - Directory Listing
Modified Mon Mar 9 13:21:54 2009 UTC (8 years ago) by jarioksa
merges to 1.15-2: r683 & r690 (anova.ccabymargin got cutoff), r728 (oecosimu.Rd knows about 'statistic')

Revision 687 - Directory Listing
Modified Tue Feb 17 09:05:39 2009 UTC (8 years, 1 month ago) by jarioksa
merged r686 to branches/1.15: rad.null failed with families gaussian and Gamma

Revision 680 - Directory Listing
Modified Fri Jan 30 12:18:25 2009 UTC (8 years, 1 month ago) by jarioksa
merged r678 in branches/1.15 (anova.ccabymargin RNG setting bug for the 2nd term)

Revision 679 - Directory Listing
Modified Fri Jan 30 12:16:31 2009 UTC (8 years, 1 month ago) by jarioksa
merged r678 in branches/1.15 (anova.ccabymargin RNG setting bug for the 2nd term)

Revision 675 - Directory Listing
Modified Tue Jan 27 12:00:40 2009 UTC (8 years, 1 month ago) by jarioksa
merged r671 (ordirgl(..., type='t') warnings) and r673 (vegdist doc fix)

Revision 667 - Directory Listing
Modified Sun Jan 18 14:29:54 2009 UTC (8 years, 2 months ago) by jarioksa
merged r659, 662-664: adonis fixes and upgrades

Revision 661 - Directory Listing
Modified Thu Jan 15 08:39:10 2009 UTC (8 years, 2 months ago) by jarioksa
merged r660 in branches/1.15 (Rd parser 2 fixes)

Revision 658 - Directory Listing
Modified Wed Jan 14 14:08:14 2009 UTC (8 years, 2 months ago) by jarioksa
merged r652, r657 to branches/1.15-2 (fix ouput of summary.cca for unconstrained models)

Revision 648 - Directory Listing
Modified Fri Dec 19 10:26:29 2008 UTC (8 years, 3 months ago) by jarioksa
Last fixes for the CRAN release 1.15-1

Revision 647 - Directory Listing
Modified Fri Dec 19 09:43:42 2008 UTC (8 years, 3 months ago) by jarioksa
updated ChangeLogs

Revision 646 - Directory Listing
Modified Fri Dec 19 09:37:01 2008 UTC (8 years, 3 months ago) by jarioksa
dollar escape fix of r644 hand-made to permatfull.Rd

Revision 645 - Directory Listing
Modified Fri Dec 19 09:34:37 2008 UTC (8 years, 3 months ago) by jarioksa
merged r644 (dollar escape fix)

Revision 637 - Directory Listing
Modified Tue Dec 16 17:39:38 2008 UTC (8 years, 3 months ago) by jarioksa
NEWS for branches/1.15 for the planned CRAN release 1.15-1

Revision 636 - Directory Listing
Modified Tue Dec 16 17:25:25 2008 UTC (8 years, 3 months ago) by jarioksa
brances/1.15 version of permatswap got a warning() because the methods appeared dubious in tests of PS & JO

Revision 634 - Directory Listing
Modified Wed Dec 10 12:45:48 2008 UTC (8 years, 3 months ago) by gsimpson
merge r633 to 1.15 branch

Revision 601 - Directory Listing
Modified Mon Dec 1 19:04:59 2008 UTC (8 years, 3 months ago) by gsimpson
merge r590 to 1.15 branch

Revision 599 - Directory Listing
Modified Thu Nov 27 10:05:41 2008 UTC (8 years, 3 months ago) by jarioksa
merged r598 to branches/1.15: text.decorana failure

Revision 556 - Directory Listing
Modified Mon Nov 10 12:12:08 2008 UTC (8 years, 4 months ago) by jarioksa
merged r550,552 (plot.cca when rownames are NULL)

Revision 537 - Directory Listing
Modified Wed Oct 29 08:57:36 2008 UTC (8 years, 4 months ago) by jarioksa
Updated Peter Solymos's email address in branches/1.15 (from r520)

Revision 536 - Directory Listing
Modified Wed Oct 29 07:49:04 2008 UTC (8 years, 4 months ago) by jarioksa
fixed row/column mix-up in permatfull in branches/1.15 (bugfix part of r525 by hand)

Revision 535 - Directory Listing
Modified Wed Oct 29 07:36:48 2008 UTC (8 years, 4 months ago) by jarioksa
merged r526 (typo in wcmdscale rsult) and r533 (tie warning in nesteddisc) to branches/1.15

Revision 524 - Directory Listing
Modified Fri Oct 10 09:34:07 2008 UTC (8 years, 5 months ago) by jarioksa
merged 511, 516, 519, 521, 522 and head/tail.summary.cca from pkg/

Revision 510 - Directory Listing
Modified Tue Sep 30 07:04:55 2008 UTC (8 years, 5 months ago) by jarioksa
last fixes for the CRAN release 1.15-0

Revision 509 - Directory Listing
Modified Fri Sep 26 11:54:59 2008 UTC (8 years, 6 months ago) by jarioksa
clean-up in release branches/1.15: removing functions that need to mature

Revision 508 - Directory Listing
Modified Fri Sep 26 11:47:00 2008 UTC (8 years, 6 months ago) by jarioksa
creating release branch/1.15

Revision 478 - Directory Listing
Modified Wed Aug 20 06:19:43 2008 UTC (8 years, 7 months ago) by jarioksa
preparing CRAN release 1.13-2

Revision 477 - Directory Listing
Modified Tue Aug 19 07:59:54 2008 UTC (8 years, 7 months ago) by jarioksa
merges to branches/1.13: r434 (wider formula in varpart), r461 
(ordiArgAbsorber knows 'const' arg), r472 (plot.procrustes failed with 
identical configs), and doc updates r435 (cca, varpart), r465 
(cascadeKM)

Revision 455 - Directory Listing
Modified Mon Aug 4 10:28:24 2008 UTC (8 years, 7 months ago) by gsimpson
Merge r453 from trunk to 1.13 branch

Revision 454 - Directory Listing
Modified Mon Aug 4 08:07:30 2008 UTC (8 years, 7 months ago) by jarioksa
merged r448 to branches/1.13: bind moving only to labels in orditkplot

Revision 438 - Directory Listing
Modified Sat Jun 28 05:15:59 2008 UTC (8 years, 8 months ago) by jarioksa
oecosimu: p/a transformation also to the primary statistic

Revision 433 - Directory Listing
Modified Tue Jun 17 07:05:13 2008 UTC (8 years, 9 months ago) by jarioksa
NEWS about fixes in would-be reelease 1.13-2

Revision 432 - Directory Listing
Modified Tue Jun 17 06:54:09 2008 UTC (8 years, 9 months ago) by jarioksa
merged r439 (fix residual df in anova.cca) to 1.13-2

Revision 431 - Directory Listing
Modified Tue Jun 17 06:50:11 2008 UTC (8 years, 9 months ago) by jarioksa
merged r428 (display scaling constant in rda/capscale) to 1.13-2

Revision 429 - Directory Listing
Modified Mon Jun 16 09:24:18 2008 UTC (8 years, 9 months ago) by jarioksa
merger r425 (rda scores scaling = 0 fix) and r427 (capscale summary fix) to branches/1.13-2

Revision 422 - Directory Listing
Modified Wed Jun 11 06:59:27 2008 UTC (8 years, 9 months ago) by jarioksa
why can't I type?

Revision 421 - Directory Listing
Modified Wed Jun 11 06:58:01 2008 UTC (8 years, 9 months ago) by jarioksa
tweaking

Revision 420 - Directory Listing
Modified Wed Jun 11 06:37:29 2008 UTC (8 years, 9 months ago) by jarioksa
ordiArgAbsorber overlooked one segments() in ordispider

Revision 419 - Directory Listing
Modified Wed Jun 11 06:36:07 2008 UTC (8 years, 9 months ago) by jarioksa
Final tuning for the release 1.13-1

Revision 416 - Directory Listing
Modified Mon Jun 9 19:45:36 2008 UTC (8 years, 9 months ago) by jarioksa
ChangeLog and NEWS about adonis

Revision 411 - Directory Listing
Modified Mon Jun 9 18:38:57 2008 UTC (8 years, 9 months ago) by hankstevens
increased speed, and added documentation

Revision 408 - Directory Listing
Modified Mon Jun 9 08:04:12 2008 UTC (8 years, 9 months ago) by jarioksa
NEWS update for release 1.13-1

Revision 407 - Directory Listing
Modified Mon Jun 9 07:19:54 2008 UTC (8 years, 9 months ago) by jarioksa
merged overlooked r398 (add qran to cca.object)

Revision 406 - Directory Listing
Modified Mon Jun 9 06:24:24 2008 UTC (8 years, 9 months ago) by jarioksa
merged r400:405 to branches/1.13 (fixes to rda/cca rank issue)

Revision 401 - Directory Listing
Modified Thu Jun 5 10:39:26 2008 UTC (8 years, 9 months ago) by jarioksa
merged r400 for print.cca; cca/rda.default still unfixed

Revision 399 - Directory Listing
Modified Thu Jun 5 04:30:03 2008 UTC (8 years, 9 months ago) by jarioksa
checking ranks failed when there was no CCA component

Revision 397 - Directory Listing
Modified Thu Jun 5 03:55:03 2008 UTC (8 years, 9 months ago) by jarioksa
r396 merged to branches/1.13

Revision 394 - Directory Listing
Modified Wed Jun 4 13:13:31 2008 UTC (8 years, 9 months ago) by jarioksa
typo

Revision 393 - Directory Listing
Modified Wed Jun 4 07:11:16 2008 UTC (8 years, 9 months ago) by jarioksa
typos

Revision 392 - Directory Listing
Modified Wed Jun 4 07:03:44 2008 UTC (8 years, 9 months ago) by jarioksa
preparing for the CRAN release of vegan_1.13-1

Revision 391 - Directory Listing
Modified Wed Jun 4 06:54:50 2008 UTC (8 years, 9 months ago) by jarioksa
mso in branches/1.13 updated to r389 in pkg/

Revision 390 - Directory Listing
Modified Wed Jun 4 06:45:21 2008 UTC (8 years, 9 months ago) by jarioksa
merged r368 (taxa2dist method name) and r371 (mite.xy) from pkg/ branches/1.13

Revision 383 - Directory Listing
Modified Sun Jun 1 05:14:01 2008 UTC (8 years, 9 months ago) by jarioksa
merged r381 to branches/1.13

Revision 370 - Directory Listing
Modified Sat May 24 09:16:23 2008 UTC (8 years, 10 months ago) by gsimpson
merge r369 from trunk to 1.13 branch

Revision 367 - Directory Listing
Modified Thu May 22 08:38:53 2008 UTC (8 years, 10 months ago) by jarioksa
committed before saving the last version...

Revision 366 - Directory Listing
Modified Thu May 22 08:34:05 2008 UTC (8 years, 10 months ago) by jarioksa
merged r365 to branches/1.13

Revision 363 - Directory Listing
Modified Wed May 21 08:20:02 2008 UTC (8 years, 10 months ago) by jarioksa
better cleanup after building docs

Revision 362 - Directory Listing
Modified Wed May 21 08:08:17 2008 UTC (8 years, 10 months ago) by jarioksa
typo

Revision 361 - Directory Listing
Modified Wed May 21 07:45:47 2008 UTC (8 years, 10 months ago) by jarioksa
final edits for a release of 1.13-0

Revision 360 - Directory Listing
Modified Mon May 19 07:30:24 2008 UTC (8 years, 10 months ago) by jarioksa
MOStest removed from release branches/1.13

Revision 355 - Directory Listing
Modified Wed May 14 17:44:38 2008 UTC (8 years, 10 months ago) by jarioksa
opened release branch 1.13

Revision 354 - Directory Listing
Modified Wed May 14 17:33:35 2008 UTC (8 years, 10 months ago) by jarioksa
making release branch 1.13

Revision 332 - Directory Listing
Modified Fri Apr 25 12:13:50 2008 UTC (8 years, 11 months ago) by gsimpson
merge r330 and r331 from trunk to 1.11-0 branch, up version number to 1.11-5.

Revision 328 - Directory Listing
Modified Wed Apr 23 13:18:43 2008 UTC (8 years, 11 months ago) by jarioksa
cleaning

Revision 322 - Directory Listing
Modified Sun Apr 20 15:44:59 2008 UTC (8 years, 11 months ago) by jarioksa
merged adonis fixes to the 1.11 branch

Revision 314 - Directory Listing
Modified Thu Apr 10 16:32:30 2008 UTC (8 years, 11 months ago) by gsimpson
bump branch version to 1.11-4 and update changelog to reflect rev 313 (merge of 312 to 1.11-x branch)

Revision 313 - Directory Listing
Modified Thu Apr 10 16:29:12 2008 UTC (8 years, 11 months ago) by gsimpson
Merging fix to adonis (r312) from trunk to 1.11-0 branch

Revision 311 - Directory Listing
Modified Thu Apr 10 12:47:25 2008 UTC (8 years, 11 months ago) by jarioksa
final cleanup for a minor release 1.11-3

Revision 310 - Directory Listing
Modified Wed Apr 9 13:03:06 2008 UTC (8 years, 11 months ago) by jarioksa
upgraded allPerms.R and permCheck.Rd to latest versions in branches/

Revision 309 - Directory Listing
Modified Wed Apr 9 09:16:52 2008 UTC (8 years, 11 months ago) by jarioksa
merged permuted.index2 updates to branches/: rev 274,283, 293, 295, 296, 298, 308 and edits to ChangeLog, NEWS

Revision 307 - Directory Listing
Modified Tue Apr 8 08:32:12 2008 UTC (8 years, 11 months ago) by jarioksa
merged r301 (R\'{e}nyi fix)

Revision 306 - Directory Listing
Modified Tue Apr 8 08:14:49 2008 UTC (8 years, 11 months ago) by jarioksa
merged bug fixes from the 'trunk' to the release branches/1.11-0

Revision 272 - Directory Listing
Modified Thu Mar 20 10:50:06 2008 UTC (9 years ago) by jarioksa
Final fixes for the release

Revision 271 - Directory Listing
Modified Thu Mar 20 08:41:29 2008 UTC (9 years ago) by jarioksa
merged r262 and r263 (but not r264)

Revision 270 - Directory Listing
Modified Wed Mar 19 17:04:32 2008 UTC (9 years ago) by gsimpson
Updated NEWS in 1.11-0 branch to highlight recent fixes to numPerms and permuted.index2

Revision 269 - Directory Listing
Modified Wed Mar 19 14:21:36 2008 UTC (9 years ago) by gsimpson
Updated ChangeLog in 1.11-0 branch to include bugfixes r265 and r266

Revision 268 - Directory Listing
Modified Wed Mar 19 14:19:28 2008 UTC (9 years ago) by gsimpson
merging bugfixes r265 and r266 from trunk to 1.11-0 branch

Revision 259 - Directory Listing
Modified Mon Mar 10 15:04:39 2008 UTC (9 years ago) by jarioksa
Stupid emacs added one empty line and that was a fatal error

Revision 258 - Directory Listing
Modified Mon Mar 10 14:50:05 2008 UTC (9 years ago) by jarioksa
Bug fix release 1.11-1

Revision 242 - Directory Listing
Modified Fri Feb 22 07:38:38 2008 UTC (9 years, 1 month ago) by jarioksa
1.11-0 on CRAN: any updates from now on will go to 1.11-1

Revision 239 - Directory Listing
Modified Wed Feb 20 07:50:57 2008 UTC (9 years, 1 month ago) by jarioksa
Prepare for the release

Revision 238 - Directory Listing
Modified Wed Feb 20 07:48:15 2008 UTC (9 years, 1 month ago) by jarioksa
Prepare for the release

Revision 237 - Directory Listing
Modified Wed Feb 20 07:12:53 2008 UTC (9 years, 1 month ago) by jarioksa
General clean-up

Revision 234 - Directory Listing
Modified Tue Feb 19 14:36:08 2008 UTC (9 years, 1 month ago) by jarioksa
Removed nestedtemp from the release branch

Revision 233 - Directory Listing
Modified Tue Feb 19 09:38:29 2008 UTC (9 years, 1 month ago) by jarioksa
merge r232

Revision 231 - Directory Listing
Modified Tue Feb 19 08:13:59 2008 UTC (9 years, 1 month ago) by jarioksa
merged r229

Revision 229 - Directory Listing
Modified Sun Feb 17 14:36:01 2008 UTC (9 years, 1 month ago) by gsimpson
Merging r228 documentation tweaks from trunk to 1.11-0 branch

Revision 227 - Directory Listing
Modified Sun Feb 17 13:55:32 2008 UTC (9 years, 1 month ago) by gsimpson
Merging r226 from trunk to 1.11-0 branch

Revision 224 - Directory Listing
Modified Sun Feb 17 13:49:45 2008 UTC (9 years, 1 month ago) by gsimpson
Formating references in CCorA.Rd

Revision 223 - Directory Listing
Modified Sun Feb 17 07:47:16 2008 UTC (9 years, 1 month ago) by jarioksa
Tweaking NEWS

Revision 221 - Directory Listing
Modified Sun Feb 17 06:48:43 2008 UTC (9 years, 1 month ago) by jarioksa
typo

Revision 220 - Directory Listing
Modified Sat Feb 16 19:21:10 2008 UTC (9 years, 1 month ago) by jarioksa
Moved NEWS to inst/ because R is not ready to for that yet

Revision 218 - Directory Listing
Modified Sat Feb 16 16:19:46 2008 UTC (9 years, 1 month ago) by gsimpson
Documentation updates and tidying

Revision 216 - Directory Listing
Modified Sat Feb 16 13:50:31 2008 UTC (9 years, 1 month ago) by jarioksa
NEWS file

Revision 215 - Directory Listing
Modified Sat Feb 16 13:44:54 2008 UTC (9 years, 1 month ago) by jarioksa
Doc tweaks (by Hank Stevens)

Revision 212 - Directory Listing
Modified Sat Feb 16 10:01:10 2008 UTC (9 years, 1 month ago) by gsimpson
Documentation tweaks

Revision 210 - Directory Listing
Modified Sat Feb 16 00:11:02 2008 UTC (9 years, 1 month ago) by gsimpson
Further documentation tweaks in permCheck

Revision 209 - Directory Listing
Modified Sat Feb 16 00:07:11 2008 UTC (9 years, 1 month ago) by gsimpson
Correct See Also section in permCheck.

Revision 208 - Directory Listing
Modified Fri Feb 15 16:36:07 2008 UTC (9 years, 1 month ago) by gsimpson
Added Note section to permCheck.Rd

Revision 207 - Directory Listing
Modified Fri Feb 15 16:08:17 2008 UTC (9 years, 1 month ago) by gsimpson
Fixed minor spelling in orditkplot.Rd in both devel tree and 1.11-0 branch

Revision 206 - Directory Listing
Modified Fri Feb 15 13:15:53 2008 UTC (9 years, 1 month ago) by jarioksa
a fatal error and R CMD check failed...

Revision 205 - Directory Listing
Modified Fri Feb 15 06:08:56 2008 UTC (9 years, 1 month ago) by jarioksa
opened a release branch (1.11-0), relabelled the pkg branch as 1.12-0

Revision 69 - Directory Listing
Modified Wed Oct 3 07:25:00 2007 UTC (9 years, 5 months ago) by jarioksa
Updated vegadoncs to know FAQ-vegan.pdf.

Revision 68 - Directory Listing
Modified Wed Oct 3 07:10:09 2007 UTC (9 years, 5 months ago) by jarioksa
Updated FAQ-vegan.pdf to the current version at R-Forge.

Revision 67 - Directory Listing
Modified Wed Oct 3 06:53:21 2007 UTC (9 years, 5 months ago) by jarioksa
Final tweaking of CRAN release 1.8-8

Revision 63 - Directory Listing
Modified Mon Oct 1 10:02:37 2007 UTC (9 years, 5 months ago) by jarioksa
Ported bug fixes from pkg/ to branches/1.8-8: r21, 25, 38, 
39, 46, 47, 50, 52, 56-68, 62

Revision 61 - Directory Listing
Modified Mon Oct 1 07:37:45 2007 UTC (9 years, 5 months ago) by jarioksa
Creating a release branch from r18 (= 1.8-7 in F-Forge)

Revision 60 - Directory Listing
Added Mon Oct 1 07:37:26 2007 UTC (9 years, 5 months ago) by jarioksa
Creating /branches

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