Pathview published in Bioinformatics

luow@users.r-forge.r-project.org (Weijun Luo) — Sun, 07 Jul 2013 22:12:01 GMT

The pathview package was recently published in Bioinformatics:
http://bioinformatics.oxfordjournals.org/content/early/2013/06/11/bioinformatics.btt285.full

Pathview is an R/Bioconductor package for pathway based data integration and visualization. It maps and renders a wide variety of biological data on relevant pathway graphs.

The package is available through Bioconductor and R-Forge:
http://bioconductor.org/packages/release/bioc/html/pathview.html
http://pathview.r-forge.r-project.org/
Please try it out and let me know if you have any comments/suggestions. Thank you!
Weijun Luo

pathview package released

luow@users.r-forge.r-project.org (Weijun Luo) — Mon, 25 Mar 2013 16:28:11 GMT

The pathview R package as a tool set for pathway based data integration and visualization.

It maps and renders user data on relevant pathway graphs. All users need is to supply their gene or compound data and specify the target pathway. Pathview automatically downloads the pathway graph data, parses the data file, maps user data to the pathway, and renders pathway graph with the mapped data. Although built as a stand-alone program, pathview may seamlessly integrate with pathway (and functional) analysis tools for a large-scale and fully automated analysis pipeline.
You may find more description on the usage here: http://pathview.r-forge.r-project.org/ and information on the project at: http://r-forge.r-project.org/projects/pathview/.
Please try it out and let me know if you have any comments/suggestions. Thank you!

R-Forge Project: pathview - News

Pathview published in Bioinformatics

pathview package released