R Development Page
RHmm log file (build_win64)
Mon Jul 15 13:26:35 2024: Building binary for package RHmm (SVN revision 454)
using R version 4.4.1 Patched (2024-07-08 r86895 ucrt) ...
* installing to library 'R:/lib/local'
* installing *source* package 'RHmm' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Kmeans.cpp -o Kmeans.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c LogProb.cpp -o LogProb.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Main.cpp -o Main.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MultivariateNormalUtil.cpp -o MultivariateNormalUtil.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RHmm.cpp -o RHmm.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SamplesUtil.cpp -o SamplesUtil.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c StatUtil.cpp -o StatUtil.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c StdAfxRHmm.cpp -o StdAfxRHmm.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cBaumWelch.cpp -o cBaumWelch.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cBaumWelchInParam.cpp -o cBaumWelchInParam.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cDMatrix.cpp -o cDMatrix.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cDVector.cpp -o cDVector.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cDerivative.cpp -o cDerivative.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cDiscrete.cpp -o cDiscrete.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cHmm.cpp -o cHmm.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cHmmFit.cpp -o cHmmFit.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cInParam.cpp -o cInParam.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cLogBaumWelch.cpp -o cLogBaumWelch.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cMixtMultivariateNormal.cpp -o cMixtMultivariateNormal.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cMixtUnivariateNormal.cpp -o cMixtUnivariateNormal.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cMultivariateNormal.cpp -o cMultivariateNormal.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cOTError.cpp -o cOTError.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cRUtils.cpp -o cRUtils.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cUnivariateNormal.cpp -o cUnivariateNormal.o
g++ -std=gnu++17 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -w -D_RDLL_ -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cViterbi.cpp -o cViterbi.o
g++ -std=gnu++17 -shared -s -static-libgcc -o RHmm.dll tmp.def Kmeans.o LogProb.o Main.o MultivariateNormalUtil.o RHmm.o SamplesUtil.o StatUtil.o StdAfxRHmm.o cBaumWelch.o cBaumWelchInParam.o cDMatrix.o cDVector.o cDerivative.o cDiscrete.o cHmm.o cHmmFit.o cInParam.o cLogBaumWelch.o cMixtMultivariateNormal.o cMixtUnivariateNormal.o cMultivariateNormal.o cOTError.o cRUtils.o cUnivariateNormal.o cViterbi.o -LR:/lib/R/R-patched/bin/x64 -lRlapack -LR:/lib/R/R-patched/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LR:/lib/R/R-patched/bin/x64 -lR
installing to R:/lib/local/00LOCK-RHmm/00new/RHmm/libs/x64
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'RHmm' as RHmm_2.2.1.zip
* DONE (RHmm)
Run time: 52.14 seconds.