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TraMineR log file (build_win64)

Thu Mar 01 16:32:02 2018: Building binary for package TraMineR (SVN revision 940)
using R version 3.4.3 Patched (2018-02-26 r74307) ...

* installing to library 'R:/lib/local/3.4'
* installing *source* package 'TraMineR' ...
** libs

*** arch - i386
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c DHDdistance.cpp -o DHDdistance.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c LCPdistance.cpp -o LCPdistance.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c NMSDURSoftdistance.cpp -o NMSDURSoftdistance.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c NMSMSTSoftdistance.cpp -o NMSMSTSoftdistance.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c NMSMSTSoftdistanceII.cpp -o NMSMSTSoftdistanceII.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c NMSMSTdistance.cpp -o NMSMSTdistance.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c NMSdistance.cpp -o NMSdistance.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c OMPerdistance.cpp -o OMPerdistance.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c OMVI2distance.cpp -o OMVI2distance.o
OMVI2distance.cpp: In member function 'virtual double OMVI2distance::distance(const int&, const int&)':
OMVI2distance.cpp:133:11: warning: unused variable 'diffii' [-Wunused-variable]
    double diffii =fabs(minimum - j_indel);
           ^
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c OMVIdistance.cpp -o OMVIdistance.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c OMdistance.cpp -o OMdistance.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c OMvdistance.cpp -o OMvdistance.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c TWEDdistance.cpp -o TWEDdistance.o
c:/Rtools/mingw_32/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c checktriangleineq.c -o checktriangleineq.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c chisq.cpp -o chisq.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c constraint.cpp -o constraint.o
c:/Rtools/mingw_32/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c dist2matrix.c -o dist2matrix.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c distancecalculator.cpp -o distancecalculator.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c distancefunctions.cpp -o distancefunctions.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c distanceobject.cpp -o distanceobject.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c eventdictionary.cpp -o eventdictionary.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c eventseq.cpp -o eventseq.o
c:/Rtools/mingw_32/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ffunctions.c -o ffunctions.o
c:/Rtools/mingw_32/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c inertiafunctions.c -o inertiafunctions.o
c:/Rtools/mingw_32/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c prefixtree.cpp -o prefixtree.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c seqedist.cpp -o seqedist.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c tmrformat.cpp -o tmrformat.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c tmrsequence.cpp -o tmrsequence.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c traminerdebug.cpp -o traminerdebug.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c treeeventmap.cpp -o treeeventmap.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c treeeventnode.cpp -o treeeventnode.o
c:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c weightedinertia.cpp -o weightedinertia.o
c:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o TraMineR.dll tmp.def DHDdistance.o LCPdistance.o NMSDURSoftdistance.o NMSMSTSoftdistance.o NMSMSTSoftdistanceII.o NMSMSTdistance.o NMSdistance.o OMPerdistance.o OMVI2distance.o OMVIdistance.o OMdistance.o OMvdistance.o TWEDdistance.o checktriangleineq.o chisq.o constraint.o dist2matrix.o distancecalculator.o distancefunctions.o distanceobject.o eventdictionary.o eventseq.o ffunctions.o inertiafunctions.o init.o prefixtree.o seqedist.o tmrformat.o tmrsequence.o traminerdebug.o treeeventmap.o treeeventnode.o weightedinertia.o -LR:/base/local215/lib/i386 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/i386 -lR
installing to R:/lib/local/3.4/TraMineR/libs/i386

*** arch - x64
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c DHDdistance.cpp -o DHDdistance.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c LCPdistance.cpp -o LCPdistance.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c NMSDURSoftdistance.cpp -o NMSDURSoftdistance.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c NMSMSTSoftdistance.cpp -o NMSMSTSoftdistance.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c NMSMSTSoftdistanceII.cpp -o NMSMSTSoftdistanceII.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c NMSMSTdistance.cpp -o NMSMSTdistance.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c NMSdistance.cpp -o NMSdistance.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c OMPerdistance.cpp -o OMPerdistance.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c OMVI2distance.cpp -o OMVI2distance.o
OMVI2distance.cpp: In member function 'virtual double OMVI2distance::distance(const int&, const int&)':
OMVI2distance.cpp:133:11: warning: unused variable 'diffii' [-Wunused-variable]
    double diffii =fabs(minimum - j_indel);
           ^
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c OMVIdistance.cpp -o OMVIdistance.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c OMdistance.cpp -o OMdistance.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c OMvdistance.cpp -o OMvdistance.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c TWEDdistance.cpp -o TWEDdistance.o
c:/Rtools/mingw_64/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c checktriangleineq.c -o checktriangleineq.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c chisq.cpp -o chisq.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c constraint.cpp -o constraint.o
c:/Rtools/mingw_64/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c dist2matrix.c -o dist2matrix.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c distancecalculator.cpp -o distancecalculator.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c distancefunctions.cpp -o distancefunctions.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c distanceobject.cpp -o distanceobject.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c eventdictionary.cpp -o eventdictionary.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c eventseq.cpp -o eventseq.o
c:/Rtools/mingw_64/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ffunctions.c -o ffunctions.o
c:/Rtools/mingw_64/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c inertiafunctions.c -o inertiafunctions.o
c:/Rtools/mingw_64/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c prefixtree.cpp -o prefixtree.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c seqedist.cpp -o seqedist.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c tmrformat.cpp -o tmrformat.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c tmrsequence.cpp -o tmrsequence.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c traminerdebug.cpp -o traminerdebug.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c treeeventmap.cpp -o treeeventmap.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c treeeventnode.cpp -o treeeventnode.o
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"     -O2 -Wall  -mtune=generic -c weightedinertia.cpp -o weightedinertia.o
c:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o TraMineR.dll tmp.def DHDdistance.o LCPdistance.o NMSDURSoftdistance.o NMSMSTSoftdistance.o NMSMSTSoftdistanceII.o NMSMSTdistance.o NMSdistance.o OMPerdistance.o OMVI2distance.o OMVIdistance.o OMdistance.o OMvdistance.o TWEDdistance.o checktriangleineq.o chisq.o constraint.o dist2matrix.o distancecalculator.o distancefunctions.o distanceobject.o eventdictionary.o eventseq.o ffunctions.o inertiafunctions.o init.o prefixtree.o seqedist.o tmrformat.o tmrsequence.o traminerdebug.o treeeventmap.o treeeventnode.o weightedinertia.o -LR:/base/local215/lib/x64 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/x64 -lR
installing to R:/lib/local/3.4/TraMineR/libs/x64
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'TraMineR'
    finding HTML links ... done
    TraMineR-package                        html  
    TraMineR.check.depr.args                html  
    TraMineR.checkupdates                   html  
    TraMineRInternal                        html  
    actcal                                  html  
    actcal.tse                              html  
    alphabet                                html  
    bfspell                                 html  
    biofam                                  html  
    cpal                                    html  
    dissassoc                               html  
    disscenter                              html  
    dissmfacw                               html  
    dissrep                                 html  
    disstree                                html  
    disstree2dot                            html  
    disstreeleaf                            html  
    dissvar                                 html  
    ex1                                     html  
    ex2                                     html  
    famform                                 html  
    mvad                                    html  
    plot.seqdiff                            html  
    plot.stslist                            html  
    plot.stslist.freq                       html  
    plot.stslist.meant                      html  
    plot.stslist.modst                      html  
    plot.stslist.rep                        html  
    plot.stslist.statd                      html  
    plot.subseqelist                        html  
    plot.subseqelistchisq                   html  
    read.tda.mdist                          html  
    seqLLCP                                 html  
    seqLLCS                                 html  
    seqST                                   html  
    seqalign                                html  
    seqcomp                                 html  
    seqconc                                 html  
    seqcost                                 html  
    seqdecomp                               html  
    seqdef                                  html  
    seqdiff                                 html  
    seqdim                                  html  
    seqdist                                 html  
    seqdistmc                               html  
    seqdss                                  html  
    seqdur                                  html  
    seqe                                    html  
    seqeapplysub                            html  
    seqecmpgroup                            html  
    seqeconstraint                          html  
    seqecontain                             html  
    seqecreate                              html  
    seqefsub                                html  
    seqeid                                  html  
    seqelength                              html  
    seqetm                                  html  
    seqeweight                              html  
    seqfcheck                               html  
    seqfind                                 html  
    seqformat                               html  
    seqfpos                                 html  
    seqgen                                  html  
    seqici                                  html  
    seqient                                 html  
    seqistatd                               html  
    seqlegend                               html  
    seqlength                               html  
    seqlogp                                 html  
    seqmeant                                html  
    seqmodst                                html  
    seqmpos                                 html  
    seqnum                                  html  
    seqpcplot                               html  
    seqplot                                 html  
    seqpm                                   html  
    seqrecode                               html  
    seqrep                                  html  
    seqsep                                  html  
    seqstatd                                html  
    seqstatf                                html  
    seqstatl                                html  
    seqsubsn                                html  
    seqtab                                  html  
    seqtransn                               html  
    seqtrate                                html  
    seqtree                                 html  
    seqtreedisplay                          html  
    stlab                                   html  
    str.seqe                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* MD5 sums
packaged installation of 'TraMineR' as TraMineR_2.1-9.zip
* DONE (TraMineR)
In R CMD INSTALL
Run time: 39.72 seconds.
Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge