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LazyMLVA log file (check_x86_64_linux)

Tue Apr  3 22:14:56 2012: Checking package LazyMLVA (SVN revision 26) ...
* using log directory '/mnt/building/build_2012-04-03-01-52/RF_PKG_CHECK/PKGS/LazyMLVA.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* checking for file 'LazyMLVA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'LazyMLVA' version '0.0-6'
* checking CRAN incoming feasibility ... NOTE
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking whether package 'LazyMLVA' can be installed ... WARNING
Found the following significant warnings:
  Warning: /mnt/building/build_2012-04-03-01-52/RF_PKG_CHECK/PKGS/LazyMLVA.Rcheck/00_pkg_src/LazyMLVA/man/plotabif2.Rd:3: All text must be in a section
See '/mnt/building/build_2012-04-03-01-52/RF_PKG_CHECK/PKGS/LazyMLVA.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
prepare_Rd: extractNormPeaks.Rd:43-44: Dropping empty section \details
prepare_Rd: extractNormPeaks.Rd:54-55: Dropping empty section \note
prepare_Rd: lazy.map.Rd:42-43: Dropping empty section \source
prepare_Rd: normPeaks.Rd:19-21: Dropping empty section \details
prepare_Rd: normPeaks.Rd:31-32: Dropping empty section \note
prepare_Rd: plotabif2.Rd:3: All text must be in a section
prepare_Rd: plotabif2.Rd:60-61: Dropping empty section \details
prepare_Rd: plotabif2.Rd:62-63: Dropping empty section \value
prepare_Rd: plotabif2.Rd:70-71: Dropping empty section \note
prepare_Rd: r_abif.Rd:14-16: Dropping empty section \details
prepare_Rd: r_abif.Rd:17-19: Dropping empty section \source
prepare_Rd: r_npk.Rd:15-17: Dropping empty section \details
prepare_Rd: r_npk.Rd:18-20: Dropping empty section \source
prepare_Rd: r_sizes.Rd:16-17: Dropping empty section \details
prepare_Rd: r_sizes.Rd:18-19: Dropping empty section \source
prepare_Rd: samePeaks.Rd:59-61: Dropping empty section \details
prepare_Rd: samePeaks.Rd:71-72: Dropping empty section \note
prepare_Rd: searchStandardPeaks.Rd:70-72: Dropping empty section \details
prepare_Rd: searchStandardPeaks.Rd:82-84: Dropping empty section \note
prepare_Rd: sizeCaller.Rd:57-58: Dropping empty section \details
prepare_Rd: sizeCaller.Rd:68-69: Dropping empty section \note
prepare_Rd: vntrLoci.Rd:47-49: Dropping empty section \details
prepare_Rd: vntrLoci.Rd:60-62: Dropping empty section \note
prepare_Rd: vntrLoci.Rd:66-68: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Data sets with usage in documentation object 'r_abif' but not in code:
  r_abif

Data sets with usage in documentation object 'r_sizes' but not in code:
  r_sizes

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There was 1 note.
See
  '/mnt/building/build_2012-04-03-01-52/RF_PKG_CHECK/PKGS/LazyMLVA.Rcheck/00check.log'
for details.

Run time: 25.97 seconds.

Additional Logs:   00install.out
Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge