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Matrix log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2018-04-08-17-04/RF_PKG_CHECK/PKGS/Matrix.Rcheck'
* using R version 3.4.3 Patched (2018-02-28 r74319)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--as-cran'
* checking for file 'Matrix/DESCRIPTION' ... OK
* this is package 'Matrix' version '1.2-14'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Martin Maechler '

Days since last update: 6

Found the following (possibly) invalid URLs:
  URL: http://www.cise.ufl.edu/research/sparse/matrices
    From: man/externalFormats.Rd
    Status: Error
    Message: libcurl error code 7:
    	Failed to connect to www.cise.ufl.edu port 80: Timed out
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Matrix' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File 'Matrix/libs/x64/Matrix.dll':
  Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'

It is good practice to register native routines and to disable symbol
search.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'Class+Meth.R'
  Running 'Simple.R'
  Running 'abIndex-tsts.R'
  Running 'base-matrix-fun.R'
  Running 'bind.R'
  Comparing 'bind.Rout' to 'bind.Rout.save' ...273,274c273,274
< cBind (m, v= c(1L, 0L) ), class(m) : dgeMatrix ,. dgCMatrix ,. dgTMatrix ,.
< rBind (m, v= c(1L, 0L) ), class(m) : dgeMatrix ,. dgCMatrix ,. dgTMatrix ,.
---
> cBind (m, v= 1:0 ), class(m) : dgeMatrix ,. dgCMatrix ,. dgTMatrix ,.
> rBind (m, v= 1:0 ), class(m) : dgeMatrix ,. dgCMatrix ,. dgTMatrix ,.
  Running 'dg_Matrix.R'
  Running 'dpo-test.R'
  Running 'dtpMatrix.R'
  Running 'factorizing.R' [12s]
  Running 'group-methods.R'
  Running 'indexing.R' [12s]
  Comparing 'indexing.Rout' to 'indexing.Rout.save' ...1990d1989
< NULL
  Running 'matprod.R'
  Running 'matr-exp.R'
  Running 'other-pkgs.R'
  Running 'spModel.matrix.R'
  Running 'validObj.R'
  Running 'write-read.R'
Warning messages:
1: running command '"diff" -bw "R:\tmp\Rtmp2vpQ52\Rdiffa11082c827a" "R:\tmp\Rtmp2vpQ52\Rdiffb1108efa7ba4"' had status 1 
2: running command '"diff" -bw "R:\tmp\Rtmp2vpQ52\Rdiffa11087aeb802" "R:\tmp\Rtmp2vpQ52\Rdiffb1108136215c6"' had status 1 
 OK
** running tests for arch 'x64' ...
  Running 'Class+Meth.R'
  Running 'Simple.R' [11s]
  Running 'abIndex-tsts.R'
  Running 'base-matrix-fun.R'
  Running 'bind.R'
  Comparing 'bind.Rout' to 'bind.Rout.save' ...273,274c273,274
< cBind (m, v= c(1L, 0L) ), class(m) : dgeMatrix ,. dgCMatrix ,. dgTMatrix ,.
< rBind (m, v= c(1L, 0L) ), class(m) : dgeMatrix ,. dgCMatrix ,. dgTMatrix ,.
---
> cBind (m, v= 1:0 ), class(m) : dgeMatrix ,. dgCMatrix ,. dgTMatrix ,.
> rBind (m, v= 1:0 ), class(m) : dgeMatrix ,. dgCMatrix ,. dgTMatrix ,.
  Running 'dg_Matrix.R'
  Running 'dpo-test.R'
  Running 'dtpMatrix.R'
  Running 'factorizing.R' [14s]
  Running 'group-methods.R'
  Running 'indexing.R' [14s]
  Comparing 'indexing.Rout' to 'indexing.Rout.save' ...1990d1989
< NULL
  Running 'matprod.R'
  Running 'matr-exp.R'
  Running 'other-pkgs.R'
  Running 'spModel.matrix.R'
  Running 'validObj.R'
  Running 'write-read.R'
Warning messages:
1: running command '"diff" -bw "R:\tmp\RtmpeKeonU\Rdiffa106c1b3e8a" "R:\tmp\RtmpeKeonU\Rdiffb106c12903507"' had status 1 
2: running command '"diff" -bw "R:\tmp\RtmpeKeonU\Rdiffa106c478232f8" "R:\tmp\RtmpeKeonU\Rdiffb106c6c0241b9"' had status 1 
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'R:/run/building/build_2018-04-08-17-04/RF_PKG_CHECK/PKGS/Matrix.Rcheck/00check.log'
for details.


Run time: 598.98 seconds.

Additional Logs:   00install.out
Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge