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Matrix log file (check_x86_64_linux)

Thu Aug  6 10:48:37 2020: Checking package Matrix (SVN revision 3342) ...
* using log directory ‘/srv/rf/building/build_2020-08-06-10-46/RF_PKG_CHECK/PKGS/Matrix.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘Matrix/DESCRIPTION’ ... OK
* this is package ‘Matrix’ version ‘1.3-0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
Maintainer: ‘Martin Maechler ’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Matrix’ can be installed ... [67s/67s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [24s/24s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [22s/22s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘Class+Meth.R’
  Running ‘Simple.R’
  Running ‘abIndex-tsts.R’
  Running ‘base-matrix-fun.R’
  Running ‘bind.R’
  Comparing ‘bind.Rout’ to ‘bind.Rout.save’ ... OK
  Running ‘dg_Matrix.R’
  Running ‘dpo-test.R’
  Running ‘dtpMatrix.R’
  Running ‘factorizing.R’
  Running ‘group-methods.R’
  Running ‘indexing.R’
  Comparing ‘indexing.Rout’ to ‘indexing.Rout.save’ ...2032,2048d2031
< > ## [i] <- val -- failed to resort @i sometimes:  (R-forge Matrix bug #6659)
< > y1 <- sparseVector(1:3, 13:15, 16)
< > y2 <- sparseVector(1:6, c(5, 6, 7, 9, 14, 15), 16)
< > i <- 1:16*12 # 12 24 36 ... 192
< > x <- sparseVector(numeric(1), 1, length=200)
< > x[i] <- y1     ; validObject(x[i]) # TRUE
< [1] TRUE
< > N <- x[i] + y2 ; validObject( N  ) # TRUE
< [1] TRUE
< > x[i] <- N ## <== bug was here ..
< > validObject(x)
< [1] TRUE
< > ## gave 'Error' invalid .."dsparseVector".. 'i' must be sorted strictly increasingly
< > stopifnot(all.equal(x[i] ,  y1+y2, tolerance=0),
< + 		    x[i] == y1+y2)
< > 
< > 
  Running ‘matprod.R’
  Running ‘matr-exp.R’
  Running ‘other-pkgs.R’
  Running ‘spModel.matrix.R’
  Running ‘validObj.R’
  Running ‘write-read.R’
 [42s/42s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [26s/25s] OK
* checking PDF version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: OK

Run time: 237.49 seconds.

Additional Logs:   00install.out
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