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regr0 log file (check_x86_64_linux)

Fri Feb 15 15:51:23 2019: Checking package regr0 (SVN revision 123) ...
* using log directory ‘/srv/rf/building/build_2019-02-15-15-48/RF_PKG_CHECK/PKGS/regr0.Rcheck’
* using R version 3.5.2 Patched (2019-02-14 r76102)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘regr0/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘regr0’ version ‘1.0-5’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Werner Stahel ’

New submission

The Title field should be in title case, current version then in title case:
‘Building regression models’
‘Building Regression Models’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘regr0’ can be installed ... [11s/12s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... WARNING
Registered S3 methods from standard package(s) overwritten by 'regr0':
  method         from 
  add1.default   stats
  add1.mlm       stats
  drop1.default  stats
  drop1.mlm      stats
  drop1.multinom nnet 
* checking dependencies in R code ... WARNING
Unexported objects imported by ':::' calls:
  ‘nnet:::VR_summ2’ ‘nnet:::multinomHess’ ‘survival:::residuals.coxph’
  ‘survival:::residuals.survreg’
  See the note in ?`:::` about the use of this operator.
  Including base/recommended package(s):
  ‘survival’ ‘nnet’
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘residuals.polr’ ‘residuals.regrcoxph’ ‘residuals.regrsurv’
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  fitted.polr fitted.regr format.modelTable plot.regrAllEqns
  plot.xdistResscale predict.mlm predict.polr predict.regr
  print.modelTable print.mregr print.regrAllEqns residuals.polr
  residuals.regr residuals.regrcoxph residuals.regrsurv
  simresiduals.default simresiduals.glm step.default step.regr
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... NOTE
Foreign function call to a different package:
  .C(nnet:::VR_summ2, ...)
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
* checking R code for possible problems ... [26s/26s] NOTE
Found the following assignments to the global environment:
File ‘regr0/R/regr.R’:
  assign("UserOptions", luopt, pos = 1)
  assign(dname, data, pos = 1)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘Surv’ ‘cluster’ ‘strata’
Undocumented data sets:
  ‘d.cheese’ ‘d.reacten’ ‘d.transaction’ ‘d.treated’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘auto/regr-description.el’, ‘regr-desc.sty’,
    ‘regr-description-concordance.tex’, ‘regr-description-mboxes.pdf’,
    ‘regr-description-mboxes2.pdf’, ‘regr-description-plmatrix.pdf’,
    ‘regr-description-taordered.pdf’, ‘regr-description-taplot.pdf’,
    ‘regr-description-xdist.pdf’, ‘regr-description.Rnw’,
    ‘regr-description.aux’, ‘regr-description.log’,
    ‘regr-description.pdf’, ‘regr-description.tex’
Files named as vignettes but with no recognized vignette engine:
   ‘vignettes/regr-description.Rnw’
(Is a VignetteBuilder field missing?)
The following files look like leftovers/mistakes:
  ‘regr-description.aux’, ‘regr-description.log’
Please remove them from your package.
* checking examples ... [15s/15s] NOTE
Examples with CPU or elapsed time > 5s
           user system elapsed
plot.regr 5.467  0.011   5.478
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘regr-test.R’ [19s/19s]
 [19s/19s] OK
* checking PDF version of manual ... OK
* DONE

Status: 4 WARNINGs, 5 NOTEs
See
  ‘/srv/rf/building/build_2019-02-15-15-48/RF_PKG_CHECK/PKGS/regr0.Rcheck/00check.log’
for details.


Run time: 126.71 seconds.

Additional Logs:   00install.out
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