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dream log file (check_x86_64_linux)

Thu Aug 18 14:19:27 2016: Checking package dream (SVN revision 42) ...
* using log directory ‘/mnt/building/build_2016-08-18-12-24/RF_PKG_CHECK/PKGS/dream.Rcheck’
* using R version 3.3.1 Patched (2016-08-17 r71112)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘dream/DESCRIPTION’ ... OK
* this is package ‘dream’ version ‘0.4-2’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Joseph Guillaume ’

New submission

Non-FOSS package license (bsd)

Suggests or Enhances not in mainstream repositories:
  multicore

Uses the superseded package: ‘snow’

Reading CITATION file fails with
  $ operator is invalid for atomic vectors
when package is not installed.

Found the following (possibly) invalid URLs:
  URL: http://CRAN.R-project.org/package=dream
    From: inst/CITATION
    Status: 404
    Message: Not Found

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
  ‘multicore’ ‘doMPI’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dream’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  bsd
Standardizable: FALSE
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘R.matlab’ ‘lattice’ ‘reshape’ ‘snow’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
CompDensity: no visible global function definition for ‘clusterApply’
CompDensity: no visible binding for global variable ‘cl’
CompDensity: no visible global function definition for ‘mclapply’
CompDensity: no visible global function definition for ‘%dopar%’
CompDensity: no visible global function definition for ‘foreach’
CompDensity: no visible binding for global variable ‘pp’
CompDensity: no visible global function definition for ‘clusterApplyLB’
DEStrategy: no visible global function definition for ‘tail’
calc.loglik: no visible global function definition for ‘modifyList’
compareToMatlab: no visible global function definition for ‘readMat’
dream: no visible global function definition for ‘modifyList’
dreamCalibrate : : no visible global function definition for
  ‘modifyList’
plot.dream: no visible global function definition for ‘devAskNewPage’
plot.dream: no visible global function definition for ‘plot’
plot.dream: no visible global function definition for ‘lines’
plot.dream: no visible global function definition for ‘title’
plot.dream: no visible global function definition for ‘densityplot’
plot.dream: no visible global function definition for ‘xyplot’
plot.dream: no visible global function definition for ‘barchart’
plotMCMCQQ: no visible global function definition for ‘melt’
plotMCMCQQ: no visible global function definition for ‘cast’
plotMCMCQQ: no visible global function definition for ‘xyplot’
plotMCMCQQ : : no visible global function definition for
  ‘panel.points’
plotMCMCQQ : : no visible global function definition for
  ‘panel.lines’
summary.dream: no visible global function definition for ‘tail’
writeMatlabDREAMSettings: no visible global function definition for
  ‘writeMat’
Undefined global functions or variables:
  %dopar% barchart cast cl clusterApply clusterApplyLB densityplot
  devAskNewPage foreach lines mclapply melt modifyList panel.lines
  panel.points plot pp readMat tail title writeMat xyplot
Consider adding
  importFrom("grDevices", "devAskNewPage")
  importFrom("graphics", "lines", "plot", "title")
  importFrom("utils", "modifyList", "tail")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'writeMatlabDREAMSettings.Rd':
  \usage lines wider than 90 characters:
     writeMatlabDREAMSettings(dream.obj, ModelName, InitPopulation, matlab.dream.dir, in.mat.file = "in.mat", out.mat.file = "out.mat", run. ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [0s/0s] OK
* checking PDF version of manual ... OK
* DONE

Status: 7 NOTEs
See
  ‘/mnt/building/build_2016-08-18-12-24/RF_PKG_CHECK/PKGS/dream.Rcheck/00check.log’
for details.


Run time: 30.6 seconds.