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amburhva log file (check_x86_64_linux)

Fri Jun 22 16:50:17 2018: Checking package amburhva (SVN revision 280) ...
* using log directory ‘/srv/rf/building/build_2018-06-22-17-47/RF_PKG_CHECK/PKGS/amburhva.Rcheck’
* using R version 3.5.1 beta (2018-06-21 r74927)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘amburhva/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘amburhva’ version ‘0.93’
* checking CRAN incoming feasibility ... WARNING
Maintainer: ‘Chester W. Jackson Jr. ’

New submission

Strong dependencies not in mainstream repositories:
  ambur

The Date field is not in ISO 8601 yyyy-mm-dd format.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  ‘spatstat’ ‘locfit’ ‘sp’ ‘googleVis’ ‘rgeos’ ‘rgdal’ ‘tcltk’
  ‘foreign’ ‘MASS’ ‘mgcv’ ‘grid’ ‘lattice’ ‘nlme’ ‘ambur’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘amburhva’ can be installed ... [7s/6s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘MASS’ ‘ambur’ ‘foreign’ ‘googleVis’ ‘grid’ ‘lattice’ ‘locfit’ ‘mgcv’
  ‘nlme’ ‘rgdal’ ‘rgeos’ ‘sp’ ‘spatstat’ ‘tcltk’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/10s] NOTE
ambur.hva : lapply_pb: no visible global function definition for
  ‘txtProgressBar’
ambur.hva : lapply_pb : wrapper: no visible global function definition
  for ‘setTxtProgressBar’
ambur.hva: no visible global function definition for ‘tk_choose.files’
ambur.hva: no visible global function definition for ‘readOGR’
ambur.hva: no visible global function definition for ‘tk_choose.dir’
ambur.hva: no visible global function definition for ‘tkProgressBar’
ambur.hva: no visible global function definition for ‘SpatialPoints’
ambur.hva: no visible global function definition for ‘setTkProgressBar’
ambur.hva: no visible global function definition for
  ‘SpatialPointsDataFrame’
ambur.hva: no visible global function definition for ‘gBuffer’
ambur.hva: no visible global function definition for
  ‘SpatialPolygonsDataFrame’
ambur.hva: no visible global function definition for ‘proj4string’
ambur.hva: no visible global function definition for ‘proj4string<-’
ambur.hva: no visible global function definition for ‘over’
ambur.hva: no visible binding for global variable ‘sd’
ambur.hva: no visible global function definition for
  ‘SpatialLinesDataFrame’
ambur.hva: no visible global function definition for ‘writeOGR’
ambur.hva: no visible global function definition for ‘as’
ambur.hva: no visible global function definition for ‘gIntersects’
ambur.hva: no visible global function definition for ‘gIntersection’
ambur.hva: no visible global function definition for ‘spChFIDs’
ambur.hva.gui: no visible global function definition for ‘tktoplevel’
ambur.hva.gui: no visible global function definition for ‘tkwm.title’
ambur.hva.gui : getfile: no visible global function definition for
  ‘tclvalue’
ambur.hva.gui : getfile: no visible global function definition for
  ‘tkgetOpenFile’
ambur.hva.gui : getdir: no visible global function definition for
  ‘tclvalue’
ambur.hva.gui : getdir: no visible global function definition for
  ‘tkchooseDirectory’
ambur.hva.gui: no visible global function definition for ‘tclVar’
ambur.hva.gui: no visible global function definition for ‘tkentry’
ambur.hva.gui : Update1: no visible global function definition for
  ‘tclvalue<-’
ambur.hva.gui : Update1: no visible global function definition for
  ‘tclvalue’
ambur.hva.gui : Update2: no visible global function definition for
  ‘tclvalue<-’
ambur.hva.gui : Update2: no visible global function definition for
  ‘tclvalue’
ambur.hva.gui : Update3: no visible global function definition for
  ‘tclvalue<-’
ambur.hva.gui : Update3: no visible global function definition for
  ‘tclvalue’
ambur.hva.gui : Update4: no visible global function definition for
  ‘tclvalue<-’
ambur.hva.gui : Update4: no visible global function definition for
  ‘tclvalue’
ambur.hva.gui : Update5: no visible global function definition for
  ‘tclvalue<-’
ambur.hva.gui: no visible global function definition for ‘tkbutton’
ambur.hva.gui: no visible global function definition for ‘tkgrid’
ambur.hva.gui: no visible global function definition for ‘tklabel’
ambur.hva.gui: no visible global function definition for ‘tclvalue’
ambur.hva.gui : OnOK: no visible global function definition for
  ‘tclvalue’
ambur.hva.gui : OnOK: no visible global function definition for
  ‘tkdestroy’
ambur.hva.gui: no visible global function definition for ‘tkbind’
ambur.hva.gui: no visible global function definition for ‘tkfocus’
Undefined global functions or variables:
  SpatialLinesDataFrame SpatialPoints SpatialPointsDataFrame
  SpatialPolygonsDataFrame as gBuffer gIntersection gIntersects over
  proj4string proj4string<- readOGR sd setTkProgressBar
  setTxtProgressBar spChFIDs tclVar tclvalue tclvalue<- tkProgressBar
  tk_choose.dir tk_choose.files tkbind tkbutton tkchooseDirectory
  tkdestroy tkentry tkfocus tkgetOpenFile tkgrid tklabel tktoplevel
  tkwm.title txtProgressBar writeOGR
Consider adding
  importFrom("methods", "as")
  importFrom("stats", "sd")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [14s/14s] WARNING
Found the following significant warnings:
  Warning: working directory was changed to ‘/srv/rf/building/build_2018-06-22-17-47/RF_PKG_CHECK/PKGS/amburhva.Rcheck/amburhva/external/2018-06-22 16_51_39 location’, resetting
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 4 NOTEs
See
  ‘/srv/rf/building/build_2018-06-22-17-47/RF_PKG_CHECK/PKGS/amburhva.Rcheck/00check.log’
for details.


Run time: 91.3 seconds.

Additional Logs:   00install.out
Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge