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ambur log file (check_x86_64_linux)

Fri Apr 13 15:47:50 2018: Checking package ambur (SVN revision 279) ...
* using log directory ‘/srv/rf/building/build_2018-04-13-16-44/RF_PKG_CHECK/PKGS/ambur.Rcheck’
* using R version 3.5.0 beta (2018-04-12 r74589)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘ambur/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ambur’ version ‘1.1.27’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Chester W. Jackson Jr. ’

New submission
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  ‘spatstat’ ‘locfit’ ‘sp’ ‘googleVis’ ‘rgeos’ ‘rgdal’ ‘tcltk’
  ‘foreign’ ‘MASS’ ‘mgcv’ ‘grid’ ‘lattice’ ‘nlme’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘ambur’ can be installed ... [13s/12s] WARNING
Found the following significant warnings:
  Warning: replacing previous import ‘spatstat::area’ by ‘MASS::area’ when loading ‘ambur’
  Warning: replacing previous import ‘spatstat::panel.histogram’ by ‘lattice::panel.histogram’ when loading ‘ambur’
See ‘/srv/rf/building/build_2018-04-13-16-44/RF_PKG_CHECK/PKGS/ambur.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... WARNING
Foreign function calls without 'PACKAGE' argument:
  .C("nndist2segs", ...)
  .C("nndist2segs", ...)
Calls with DUP:
   .C("nndist2segs", xp = as.double(p[, 1]), yp = as.double(p[, 
       2]), npoints = as.integer(np), x0 = as.double(l[, 1]), y0 = as.double(l[, 
       2]), x1 = as.double(l[, 3]), y1 = as.double(l[, 4]), nsegments = as.integer(nl), 
       epsilon = as.double(.Machine$double.eps), dist2 = as.double(dist2), 
       index = as.integer(integer(np)), DUP = FALSE)
   .C("nndist2segs", xp = as.double(p[, 1]), yp = as.double(p[, 
       2]), npoints = as.integer(np), x0 = as.double(l[, 1]), y0 = as.double(l[, 
       2]), x1 = as.double(l[, 3]), y1 = as.double(l[, 4]), nsegments = as.integer(nl), 
       epsilon = as.double(.Machine$double.eps), dist2 = as.double(dist2), 
       index = as.integer(integer(np)), DUP = FALSE)
DUP is no longer supported and will be ignored.
* checking R code for possible problems ... [23s/23s] NOTE
ambur.analysis: no visible global function definition for
  ‘graphics.off’
ambur.analysis: no visible global function definition for ‘dev.new’
ambur.analysis: no visible global function definition for ‘par’
ambur.analysis: no visible global function definition for ‘mtext’
ambur.analysis: no visible global function definition for ‘select.list’
ambur.analysis: no visible global function definition for ‘write.table’
ambur.analysis: no visible global function definition for ‘screen’
ambur.analysis: no visible global function definition for ‘points’
ambur.analysis: no visible global function definition for ‘pdf’
ambur.analysis: no visible global function definition for ‘hist’
ambur.analysis: no visible global function definition for ‘dev.off’
ambur.analysis: no visible global function definition for ‘text’
ambur.analysis: no visible global function definition for ‘legend’
ambur.analysis: no visible global function definition for ‘layout’
ambur.analysis: no visible global function definition for ‘axis’
ambur.analysis: no visible global function definition for ‘segments’
ambur.analysis: no visible global function definition for ‘abline’
ambur.analysis: no visible global function definition for ‘arrows’
ambur.analysis : sapply_pb: no visible global function definition for
  ‘txtProgressBar’
ambur.analysis : sapply_pb : wrapper: no visible global function
  definition for ‘setTxtProgressBar’
ambur.analysis: no visible global function definition for ‘read.table’
ambur.bufferlines: no visible global function definition for ‘as’
ambur.critical: no visible global function definition for ‘pdf’
ambur.critical: no visible global function definition for ‘lines’
ambur.critical: no visible global function definition for ‘points’
ambur.critical: no visible global function definition for ‘dev.off’
ambur.filtertran : sapply_pb: no visible global function definition for
  ‘txtProgressBar’
ambur.filtertran : sapply_pb : wrapper: no visible global function
  definition for ‘setTxtProgressBar’
ambur.filtertran: no visible global function definition for ‘segments’
ambur.forecast : sapply_pb: no visible global function definition for
  ‘txtProgressBar’
ambur.forecast : sapply_pb : wrapper: no visible global function
  definition for ‘setTxtProgressBar’
ambur.neartran : sapply_pb: no visible global function definition for
  ‘txtProgressBar’
ambur.neartran : sapply_pb : wrapper: no visible global function
  definition for ‘setTxtProgressBar’
ambur.setup: no visible global function definition for
  ‘installed.packages’
ambur.setup: no visible global function definition for
  ‘available.packages’
ambur.setup: no visible global function definition for
  ‘install.packages’
ambur.setup: no visible global function definition for
  ‘remove.packages’
ambur.smooth: no visible global function definition for ‘points’
ambur.statshape: no visible global function definition for ‘read.table’
Undefined global functions or variables:
  abline arrows as available.packages axis dev.new dev.off graphics.off
  hist install.packages installed.packages layout legend lines mtext
  par pdf points read.table remove.packages screen segments select.list
  setTxtProgressBar text txtProgressBar write.table
Consider adding
  importFrom("grDevices", "dev.new", "dev.off", "graphics.off", "pdf")
  importFrom("graphics", "abline", "arrows", "axis", "hist", "layout",
             "legend", "lines", "mtext", "par", "points", "screen",
             "segments", "text")
  importFrom("methods", "as")
  importFrom("utils", "available.packages", "install.packages",
             "installed.packages", "read.table", "remove.packages",
             "select.list", "setTxtProgressBar", "txtProgressBar",
             "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* checking for code which exercises the package ... WARNING
No examples, no tests, no vignettes
* DONE

Status: 3 WARNINGs, 4 NOTEs
See
  ‘/srv/rf/building/build_2018-04-13-16-44/RF_PKG_CHECK/PKGS/ambur.Rcheck/00check.log’
for details.


Run time: 102.61 seconds.

Additional Logs:   00install.out
Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge