R Development Page
aroma.cn.eval log file (check_x86_64_linux)
Thu Aug 18 13:45:42 2016: Checking package aroma.cn.eval (SVN revision 3671) ...
* using log directory ‘/mnt/building/build_2016-08-18-12-24/RF_PKG_CHECK/PKGS/aroma.cn.eval.Rcheck’
* using R version 3.3.1 Patched (2016-08-17 r71112)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘aroma.cn.eval/DESCRIPTION’ ... OK
* this is package ‘aroma.cn.eval’ version ‘0.5.2’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Henrik Bengtsson ’
New submission
The Title field should be in title case, current version then in title case:
‘Package for evaluating copy-number estimates’
‘Package for Evaluating Copy-Number Estimates’
The Description field should not start with the package name,
'This package' or similar.
The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘aroma.cn.eval’ can be installed ... [2s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
getCounts.RocCurve
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
as.character.RocCurve: no visible global function definition for
‘GenericSummary’
findRocSmoothingForTpAtFp.SegmentedGenomicSignalsInterface: no visible
global function definition for ‘str’
findRocTpAtFp.default: no visible global function definition for ‘str’
makeTruth: no visible global function definition for ‘str’
testSeparation.SegmentedGenomicSignalsInterface: no visible global
function definition for ‘na.omit’
Undefined global functions or variables:
GenericSummary na.omit str
Consider adding
importFrom("stats", "na.omit")
importFrom("utils", "str")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/3s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘parseRegion.R’
[1s/1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [3s/3s] OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/mnt/building/build_2016-08-18-12-24/RF_PKG_CHECK/PKGS/aroma.cn.eval.Rcheck/00check.log’
for details.
Run time: 51.22 seconds.