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hyperSpec.matrixStats log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2014-09-15-18-04/RF_PKG_CHECK/PKGS/hyperSpec.matrixStats.Rcheck'
* using R version 3.1.1 Patched (2014-09-12 r66591)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'hyperSpec.matrixStats/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'hyperSpec.matrixStats' version '0.1-20140915'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Claudia Beleites '
New submission
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hyperSpec.matrixStats' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported object imported by a ':::' call: 'hyperSpec:::.levelplot'
  See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... WARNING
Warning: declared S3 method 'colCollapse.hyperSpec' not found
Warning: declared S3 method 'rowCollapse.hyperSpec' not found
See section 'Generic functions and methods' of the 'Writing R
Extensions' manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
colAvgsPerRowSet.hyperSpec: no visible binding for global variable 'x'
rowAvgsPerColSet.hyperSpec: no visible binding for global variable 'x'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
  generic 'colMads' and siglist 'hyperSpec,hyperSpec'
  generic 'colMads' and siglist 'hyperSpec,missing'
  generic 'colMads' and siglist 'hyperSpec,numeric'
  generic 'rowMads' and siglist 'hyperSpec,hyperSpec'
  generic 'rowMads' and siglist 'hyperSpec,missing'
  generic 'rowMads' and siglist 'hyperSpec,numeric'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'matrixStats'
  'value' 'idxs' 'centers' 'constant' 'which' 'method' 'ties.method'
  'preserveShape' 'center' 'w' 'probs' 'X' 'W' 'S' 'FUN' 'tFUN'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There were 4 notes.
See
  'R:/run/building/build_2014-09-15-18-04/RF_PKG_CHECK/PKGS/hyperSpec.matrixStats.Rcheck/00check.log'
for details.

Run time: 51.34 seconds.

Additional Logs:   00install.out
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