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raster log file (check_x86_64_linux)

Thu Jun  4 02:47:24 2020: Checking package raster (SVN revision 3419) ...
* using log directory ‘/srv/rf/building/build_2020-06-04-02-46/RF_PKG_CHECK/PKGS/raster.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘raster/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘raster’ version ‘3.3-3’
* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
Maintainer: ‘Robert J. Hijmans ’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘raster’ can be installed ... [152s/154s] OK
* checking installed package size ... NOTE
  installed size is 16.6Mb
  sub-directories of 1Mb or more:
    R      2.5Mb
    libs  13.0Mb
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [79s/79s] NOTE
.getCRS: no visible global function definition for ‘showSRID’
.getCRS: no visible global function definition for ‘showP4’
Undefined global functions or variables:
  showP4 showSRID
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... WARNING
Packages unavailable to check Rd xrefs: ‘gstat’, ‘fields’
Missing link or links in documentation object 'density.Rd':
  ‘[base]{plot}’

Missing link or links in documentation object 'plot.Rd':
  ‘[base]{plot}’

Missing link or links in documentation object 'zoom.Rd':
  ‘[base]{plot}’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... ERROR
Running examples in ‘raster-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: NAvalue
> ### Title: Set the NA value of a RasterLayer
> ### Aliases: NAvalue<- NAvalue
> ### Keywords: spatial
> 
> ### ** Examples
>  
> r1 <- raster(system.file("external/rlogo.grd", package="raster"))
Error in showSRID(x) : could not find function "showSRID"
Calls: raster ... .rasterFromRasterFile -> raster -> raster -> .local -> .getCRS
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 [4s/4s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Backtrace:
   1. raster::brick(nrows = 100, ncols = 100, nl = 2)
   2. raster::brick(nrows = 100, ncols = 100, nl = 2)
   3. raster:::.local(...)
   5. raster::brick(e, nrows = nrows, ncols = ncols, crs = crs, nl = nl)
   6. raster:::.local(x, ...)
   7. raster::`projection<-`(`*tmp*`, value = "+proj=longlat +datum=WGS84")
   8. raster:::.getCRS(value)
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 1 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
  1. Error: (unknown) (@test-subset.R#2) 
  
  Error: testthat unit tests failed
  Execution halted
* checking PDF version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs, 1 WARNING, 2 NOTEs
See
  ‘/srv/rf/building/build_2020-06-04-02-46/RF_PKG_CHECK/PKGS/raster.Rcheck/00check.log’
for details.

Run time: 331.74 seconds.

Additional Logs:   00install.out
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