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topmodels log file (check_x86_64_linux)

Fri Sep 26 20:48:08 2025: Checking package topmodels (SVN revision 1909) ...
* using log directory ‘/srv/rf/building/build_2025-09-26-20-44/RF_PKG_CHECK/PKGS/topmodels.Rcheck’
* using R version 4.5.1 Patched (2025-09-22 r88868)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 12.2.0-14) 12.2.0
    GNU Fortran (Debian 12.2.0-14) 12.2.0
* running under: Debian GNU/Linux 12 (bookworm)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘topmodels/DESCRIPTION’ ... OK
* this is package ‘topmodels’ version ‘0.3-0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [6s/250s] NOTE
Maintainer: ‘Achim Zeileis ’

New submission

Suggests or Enhances not in mainstream repositories:
  countreg
Availability using Additional_repositories specification:
  countreg   yes   https://zeileis.R-universe.dev

Found the following (possibly) invalid URLs:
  URL: https://R-Forge.R-project.org/projects/topmodels/
    From: inst/CITATION
    Status: Error
    Message: libcurl error code 28:
      	Connection timed out after 60001 milliseconds
  URL: https://topmodels.R-Forge.R-project.org/topmodels/
    From: DESCRIPTION
    Status: Error
    Message: libcurl error code 28:
      	Connection timed out after 60001 milliseconds
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘topmodels’ can be installed ... [9s/9s] OK
* used C compiler: ‘gcc (Debian 12.2.0-14) 12.2.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s/18s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'pdf.distribution.Rd':
  \examples lines wider than 100 characters:
                     solution = rep(c("approximated MyPoisson", "analytic Poisson"), each = length(probs)))

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [31s/31s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
pdf.distribution 5.933  0.012   5.945
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘tinytest.R’ [46s/46s]
 [46s/46s] OK
* checking PDF version of manual ... [8s/7s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 3 NOTEs
See
  ‘/srv/rf/building/build_2025-09-26-20-44/RF_PKG_CHECK/PKGS/topmodels.Rcheck/00check.log’
for details.

Run time: 388.88 seconds.