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localEM log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2019-06-12-19-47/RF_PKG_CHECK/PKGS/localEM.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--as-cran'
* checking for file 'localEM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'localEM' version '0.6.3'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Paul Nguyen '

New submission

Suggests or Enhances not in mainstream repositories:
  INLA, Pmisc

Package has a VignetteBuilder field but no prebuilt vignette index.

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'INLA'

Package which this enhances but not available for checking: 'gpuR'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'localEM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'localEM.Rproj'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' import not declared from: 'reshape2'
'library' or 'require' call not declared from: 'data.table'
'library' or 'require' call to 'data.table' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
diagOfInv: no visible global function definition for '.'
emsObjects : : no visible global function definition for
  'as'
emsObjects: no visible binding for global variable 'verbose'
emsRgcp: no visible binding for global variable 'logL'
emsRgcp: no visible binding for global variable 'intercept'
emsRgcp: no visible binding for global variable 'obs'
get2ndDeriv: no visible global function definition for 'as'
get2ndDeriv: no visible binding for global variable 'i'
get2ndDeriv: no visible binding for global variable 'j'
objectsForLikelihoodOneMap: no visible global function definition for
  'as'
objectsForLikelihoodOneMap: no visible global function definition for
  'dpois'
rgcpPred : : no visible global function definition for
  'approx'
Undefined global functions or variables:
  . approx as dpois i intercept j logL obs verbose
Consider adding
  importFrom("methods", "as")
  importFrom("stats", "approx", "dpois")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'excProbMulti' 'lemXvMulti' 'rasterPartitionMulti' 'riskEstMulti'
  'smoothingMatrixMulti'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... NOTE
File 'localEM/libs/x64/localEM.dll':
  Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'

It is good practice to register native routines and to disable symbol
search.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 5 NOTEs
See
  'R:/run/building/build_2019-06-12-19-47/RF_PKG_CHECK/PKGS/localEM.Rcheck/00check.log'
for details.


Run time: 147.07 seconds.