R Development Page

seqinr log file (build_win64)

Tue May 25 14:35:13 2021: Building binary for package seqinr (SVN revision 2130)
using R version 4.1.0 Patched (2021-05-23 r80364) ...

* installing to library 'R:/lib/local/4.1'
* installing *source* package 'seqinr' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG       -DUSE_TYPE_CHECKING_STRICT   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c alignment.c -o alignment.o
"C:/rtools40/mingw64/bin/"gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG       -DUSE_TYPE_CHECKING_STRICT   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c fastacc.c -o fastacc.o
"C:/rtools40/mingw64/bin/"gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG       -DUSE_TYPE_CHECKING_STRICT   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c getzlibsock.c -o getzlibsock.o
"C:/rtools40/mingw64/bin/"gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG       -DUSE_TYPE_CHECKING_STRICT   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c kaks.c -o kaks.o
"C:/rtools40/mingw64/bin/"gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG       -DUSE_TYPE_CHECKING_STRICT   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c packagename_init.c -o packagename_init.o
"C:/rtools40/mingw64/bin/"gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG       -DUSE_TYPE_CHECKING_STRICT   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c util.c -o util.o
"C:/rtools40/mingw64/bin/"gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG       -DUSE_TYPE_CHECKING_STRICT   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c zsockr.c -o zsockr.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o seqinr.dll tmp.def alignment.o fastacc.o getzlibsock.o kaks.o packagename_init.o util.o zsockr.o -LR:/lib/R/R-patched/bin/x64 -lR
installing to R:/lib/local/4.1/00LOCK-seqinr/00new/seqinr/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'seqinr'
    finding HTML links ... done
    AAstat                                  html  
    AnoukResult                             html  
    ECH                                     html  
    EXP                                     html  
    GC                                      html  
    JLO                                     html  
    SEQINR.UTIL                             html  
    SeqAcnucWeb                             html  
    SeqFastaAA                              html  
    SeqFastadna                             html  
    SeqFrag                                 html  
    a                                       html  
    aaa                                     html  
    aacost                                  html  
    aaindex                                 html  
    acnucopen                               html  
    al2bp                                   html  
    alllistranks                            html  
    amb                                     html  
    as.alignment                            html  
    as.matrix.alignment                     html  
    autosocket                              html  
    baselineabif                            html  
    bma                                     html  
    c2s                                     html  
    cai                                     html  
    caitab                                  html  
    chargaff                                html  
    choosebank                              html  
    circle                                  html  
    closebank                               html  
    clustal                                 html  
    col2alpha                               html  
    comp                                    html  
    computePI                               html  
    consensus                               html  
REDIRECT:topic	 Previous alias or file overwritten by alias: R:/lib/local/4.1/00LOCK-seqinr/00new/seqinr/help/con.html
    count                                   html  
    countfreelists                          html  
    countsubseqs                            html  
    crelistfromclientdata                   html  
    dia.bactgensize                         html  
    dinucl                                  html  
    dist.alignment                          html  
    dotPlot                                 html  
    dotchart.uco                            html  
    draw.oriloc                             html  
    draw.rearranged.oriloc                  html  
    draw.recstat                            html  
    ec999                                   html  
    extract.breakpoints                     html  
    extractseqs                             html  
    fasta                                   html  
    fastacc                                 html  
    gb2fasta                                html  
    gbk2g2                                  html  
    gbk2g2.euk                              html  
    gcO2                                    html  
    gcT                                     html  
    get.db.growth                           html  
    getAnnot                                html  
    getFrag                                 html  
    getKeyword                              html  
    getLength                               html  
    getLocation                             html  
    getName                                 html  
    getSequence                             html  
    getTrans                                html  
    getType                                 html  
    getlistrank                             html  
    getliststate                            html  
    gfrag                                   html  
    ghelp                                   html  
    gs500liz                                html  
    identifiler                             html  
    isenum                                  html  
    kaks-torture                            html  
    kaks                                    html  
    knowndbs                                html  
    lseqinr                                 html  
    m16j                                    html  
    mase                                    html  
    modifylist                              html  
    move                                    html  
    msf                                     html  
    n2s                                     html  
    oriloc                                  html  
    pK                                      html  
    parser.socket                           html  
    peakabif                                html  
    permutation                             html  
    phylip                                  html  
    plot.SeqAcnucWeb                        html  
    plotPanels                              html  
    plotabif                                html  
    plotladder                              html  
    pmw                                     html  
    prepgatannots                           html  
    prettyseq                               html  
    print.SeqAcnucWeb                       html  
    print.qaw                               html  
    prochlo                                 html  
    query                                   html  
    read.abif                               html  
    read.alignment                          html  
    read.fasta                              html  
REDIRECT:topic	 Previous alias or file overwritten by alias: R:/lib/local/4.1/00LOCK-seqinr/00new/seqinr/help/FASTA.html
    readBins                                html  
    readPanels                              html  
    readfirstrec                            html  
    readsmj                                 html  
    rearranged.oriloc                       html  
    recstat                                 html  
    residuecount                            html  
    revaligntest                            html  
    reverse.align                           html  
    rot13                                   html  
    s2c                                     html  
    s2n                                     html  
    savelist                                html  
    seqinr-package                          html  
    setlistname                             html  
    splitseq                                html  
    stresc                                  html  
    stutterabif                             html  
    swap                                    html  
    syncodons                               html  
    synsequence                             html  
    tablecode                               html                         html                         html  
    toyaa                                   html  
    toycodon                                html  
    translate                               html  
    trimSpace                               html  
    uco                                     html  
    ucoweight                               html  
    waterabs                                html                       html  
    words                                   html  
    words.pos                               html  
    write.fasta                             html  
    zscore                                  html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'seqinr' as
* DONE (seqinr)
Run time: 15.91 seconds.
Thanks to:
Vienna University of Economics and Business Powered By FusionForge