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ACEt log file (build_win64)

Sun May 07 05:48:47 2017: Building binary for package ACEt (SVN revision 41)
using R version 3.3.3 (2017-03-06) ...

* installing to library 'R:/lib/local/3.3'
* installing *source* package 'ACEt' ...
** libs

*** arch - i386
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.3/BH/include" -I"R:/lib/local/3.3/RcppArmadillo/include" -I"R:/lib/local/3.3/Rcpp/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c AtCtEt.cpp -o AtCtEt.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.3/BH/include" -I"R:/lib/local/3.3/RcppArmadillo/include" -I"R:/lib/local/3.3/Rcpp/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c AtCtEtp.cpp -o AtCtEtp.o
AtCtEtp.cpp: In function 'SEXPREC* loglik_AtCtEt_epsp_g_c(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
AtCtEtp.cpp:295:6: warning: unused variable 'num_a' [-Wunused-variable]
  int num_a = b_a_m.n_cols;
      ^
AtCtEtp.cpp:296:6: warning: unused variable 'num_c' [-Wunused-variable]
  int num_c = b_c_m.n_cols;
      ^
AtCtEtp.cpp:297:6: warning: unused variable 'num_e' [-Wunused-variable]
  int num_e = b_e_m.n_cols;
      ^
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.3/BH/include" -I"R:/lib/local/3.3/RcppArmadillo/include" -I"R:/lib/local/3.3/Rcpp/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c AtEtp.cpp -o AtEtp.o
AtEtp.cpp: In function 'SEXPREC* loglik_AtEt_epsp_g_c(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
AtEtp.cpp:213:6: warning: unused variable 'num_a' [-Wunused-variable]
  int num_a = b_a_m.n_cols;
      ^
AtEtp.cpp:214:6: warning: unused variable 'num_e' [-Wunused-variable]
  int num_e = b_e_m.n_cols;
      ^
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.3/BH/include" -I"R:/lib/local/3.3/RcppArmadillo/include" -I"R:/lib/local/3.3/Rcpp/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c RInterface.cc -o RInterface.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.3/BH/include" -I"R:/lib/local/3.3/RcppArmadillo/include" -I"R:/lib/local/3.3/Rcpp/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c mcmc.cc -o mcmc.o
mcmc.cc: In function 'void ci_mh_atctet(double*, int*, int*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*, double*)':
mcmc.cc:31:76: warning: typedef 'gen_type' locally defined but not used [-Wunused-local-typedefs]
  typedef boost::variate_generator gen_type;
                                                                            ^
mcmc.cc:33:77: warning: typedef 'gen_type3' locally defined but not used [-Wunused-local-typedefs]
  typedef boost::variate_generator gen_type3;
                                                                             ^
mcmc.cc: In function 'void ci_mh_atctet_2(double*, int*, int*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, double*)':
mcmc.cc:925:29: warning: typedef 'Mat_i' locally defined but not used [-Wunused-local-typedefs]
  typedef std::vector Mat_i;
                             ^
mcmc.cc:932:76: warning: typedef 'gen_type' locally defined but not used [-Wunused-local-typedefs]
  typedef boost::variate_generator gen_type;
                                                                            ^
mcmc.cc:934:77: warning: typedef 'gen_type3' locally defined but not used [-Wunused-local-typedefs]
  typedef boost::variate_generator gen_type3;
                                                                             ^
c:/Rtools/mingw_32/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.3/BH/include" -I"R:/lib/local/3.3/RcppArmadillo/include" -I"R:/lib/local/3.3/Rcpp/include" -I"R:/base/local215/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c packagename_init.c -o packagename_init.o
c:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o ACEt.dll tmp.def AtCtEt.o AtCtEtp.o AtEtp.o RInterface.o mcmc.o packagename_init.o -LR:/lib/R/R-patched/bin/i386 -lRlapack -LR:/lib/R/R-patched/bin/i386 -lRblas -lgfortran -lm -lquadmath -LR:/base/local215/lib/i386 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/i386 -lR
installing to R:/lib/local/3.3/ACEt/libs/i386

*** arch - x64
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.3/BH/include" -I"R:/lib/local/3.3/RcppArmadillo/include" -I"R:/lib/local/3.3/Rcpp/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c AtCtEt.cpp -o AtCtEt.o
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.3/BH/include" -I"R:/lib/local/3.3/RcppArmadillo/include" -I"R:/lib/local/3.3/Rcpp/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c AtCtEtp.cpp -o AtCtEtp.o
AtCtEtp.cpp: In function 'SEXPREC* loglik_AtCtEt_epsp_g_c(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
AtCtEtp.cpp:295:6: warning: unused variable 'num_a' [-Wunused-variable]
  int num_a = b_a_m.n_cols;
      ^
AtCtEtp.cpp:296:6: warning: unused variable 'num_c' [-Wunused-variable]
  int num_c = b_c_m.n_cols;
      ^
AtCtEtp.cpp:297:6: warning: unused variable 'num_e' [-Wunused-variable]
  int num_e = b_e_m.n_cols;
      ^
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.3/BH/include" -I"R:/lib/local/3.3/RcppArmadillo/include" -I"R:/lib/local/3.3/Rcpp/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c AtEtp.cpp -o AtEtp.o
AtEtp.cpp: In function 'SEXPREC* loglik_AtEt_epsp_g_c(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
AtEtp.cpp:213:6: warning: unused variable 'num_a' [-Wunused-variable]
  int num_a = b_a_m.n_cols;
      ^
AtEtp.cpp:214:6: warning: unused variable 'num_e' [-Wunused-variable]
  int num_e = b_e_m.n_cols;
      ^
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.3/BH/include" -I"R:/lib/local/3.3/RcppArmadillo/include" -I"R:/lib/local/3.3/Rcpp/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c RInterface.cc -o RInterface.o
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.3/BH/include" -I"R:/lib/local/3.3/RcppArmadillo/include" -I"R:/lib/local/3.3/Rcpp/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c mcmc.cc -o mcmc.o
mcmc.cc: In function 'void ci_mh_atctet(double*, int*, int*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*, double*)':
mcmc.cc:31:76: warning: typedef 'gen_type' locally defined but not used [-Wunused-local-typedefs]
  typedef boost::variate_generator gen_type;
                                                                            ^
mcmc.cc:33:77: warning: typedef 'gen_type3' locally defined but not used [-Wunused-local-typedefs]
  typedef boost::variate_generator gen_type3;
                                                                             ^
mcmc.cc: In function 'void ci_mh_atctet_2(double*, int*, int*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, double*)':
mcmc.cc:925:29: warning: typedef 'Mat_i' locally defined but not used [-Wunused-local-typedefs]
  typedef std::vector Mat_i;
                             ^
mcmc.cc:932:76: warning: typedef 'gen_type' locally defined but not used [-Wunused-local-typedefs]
  typedef boost::variate_generator gen_type;
                                                                            ^
mcmc.cc:934:77: warning: typedef 'gen_type3' locally defined but not used [-Wunused-local-typedefs]
  typedef boost::variate_generator gen_type3;
                                                                             ^
c:/Rtools/mingw_64/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.3/BH/include" -I"R:/lib/local/3.3/RcppArmadillo/include" -I"R:/lib/local/3.3/Rcpp/include" -I"R:/base/local215/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c packagename_init.c -o packagename_init.o
c:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o ACEt.dll tmp.def AtCtEt.o AtCtEtp.o AtEtp.o RInterface.o mcmc.o packagename_init.o -LR:/lib/R/R-patched/bin/x64 -lRlapack -LR:/lib/R/R-patched/bin/x64 -lRblas -lgfortran -lm -lquadmath -LR:/base/local215/lib/x64 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/x64 -lR
installing to R:/lib/local/3.3/ACEt/libs/x64
** R
** data
** preparing package for lazy loading
** help
Warning: R:/tmp/RtmpknvjoM/R.INSTALL2dc152a3a31/ACEt/man/ACEt-package.Rd:1: All text must be in a section
*** installing help indices
** building package indices
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* MD5 sums
packaged installation of 'ACEt' as ACEt_1.8.0.zip
* DONE (ACEt)
Run time: 86.31 seconds.
Thanks to:
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