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copula log file (check_x86_64_linux)

Mon Jan  7 19:39:24 2019: Checking package copula (SVN revision 1816) ...
* using log directory ‘/srv/rf/building/build_2019-01-07-19-27/RF_PKG_CHECK/PKGS/copula.Rcheck’
* using R version 3.5.2 Patched (2019-01-02 r75945)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘copula/DESCRIPTION’ ... OK
* this is package ‘copula’ version ‘0.999-20’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Martin Maechler ’

Size of tarball: 5448763 bytes
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
  ‘nor1mix’ ‘copulaData’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘copula’ can be installed ... [36s/36s] OK
* checking installed package size ... NOTE
  installed size is  9.8Mb
  sub-directories of 1Mb or more:
    R     2.1Mb
    doc   5.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [60s/60s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [66s/66s] OK
** found \donttest examples: check also with --run-donttest
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘Stirling-etc.R’
  Running ‘copula-play.R’ [21s/21s]
  Running ‘dC-dc-ex.R’
  Running ‘estim-ex.R’
  Running ‘explicitCop-ex.R’ [19s/19s]
  Running ‘fitting-ex.R’ [10s/10s]
  Running ‘fixedPar-ex.R’
  Running ‘ggraph-tst.R’
  Running ‘khoudraji-ex.R’ [19s/19s]
  Running ‘misc.R’
  Running ‘mixCop-tst.R’
  Running ‘moments.R’
  Running ‘nac-experi.R’ [14s/14s]
  Running ‘retstable-ex.R’
  Running ‘rstable-ex.R’
  Running ‘tail-pcopula.R’
  Comparing ‘tail-pcopula.Rout’ to ‘tail-pcopula.Rout.save’ ...28c28
< [1] FALSE
---
> [1] TRUE
196c196
<   0.062   0.000   0.063 
---
>   0.031   0.000   0.031 
199c199
<   0.060   0.000   0.061 
---
>   0.030   0.000   0.029 
202c202
<   4.510   0.032   4.543 
---
>   2.167   0.009   2.180 
217c217
< [1] FALSE
---
> [1] TRUE
222a223,242
> > system.time(fLt9.2 <- fitLambda(U.9.2, method = "t"))
>    user  system elapsed 
>   2.283   0.006   2.292 
> > fLt9.2
> $Lambda
>           [,1]      [,2]
> [1,] 1.0000000 0.7198073
> [2,] 0.7198073 1.0000000
> 
> $P
>           [,1]      [,2]
> [1,] 1.0000000 0.8987356
> [2,] 0.8987356 1.0000000
> 
> $Nu
>          [,1]     [,2]
> [1,]       NA 1.926772
> [2,] 1.926772       NA
> 
> > stopifnot(all.equal(fLt9.2$Lambda[1, 2], 0.719807333))
 [141s/142s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [389s/389s] OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/srv/rf/building/build_2019-01-07-19-27/RF_PKG_CHECK/PKGS/copula.Rcheck/00check.log’
for details.


Run time: 800.67 seconds.

Additional Logs:   00install.out
Thanks to:
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