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stops log file (check_x86_64_linux)

Fri Mar 15 18:45:25 2024: Checking package stops (SVN revision 500) ...
* using log directory ‘/srv/rf/building/build_2024-03-15-18-44/RF_PKG_CHECK/PKGS/stops.Rcheck’
* using R version 4.3.3 Patched (2024-02-29 r86017)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Debian 12.2.0-14) 12.2.0
    GNU Fortran (Debian 12.2.0-14) 12.2.0
* running under: Debian GNU/Linux 12 (bookworm)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘stops/DESCRIPTION’ ... OK
* this is package ‘stops’ version ‘1.5-1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [6s/10s] Note_to_CRAN_maintainers
Maintainer: ‘Thomas Rusch ’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘stops’ can be installed ... [15s/15s] WARNING
Found the following significant warnings:
  Warning: S3 methods ‘biplotmds.bcmds’, ‘biplotmds.lmds’ were declared in NAMESPACE but not found
See ‘/srv/rf/building/build_2024-03-15-18-44/RF_PKG_CHECK/PKGS/stops.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/4s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the package can be unloaded cleanly ... [4s/4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
* checking loading without being on the library search path ... [4s/4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [21s/21s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘c_shepardness’ ‘stop_bcmds’ ‘stop_clca’ ‘stop_cldae’ ‘stop_cldak’
  ‘stop_smddae’ ‘stop_smddak’ ‘stop_smds’ ‘stop_spmddae’ ‘stop_spmddak’
  ‘stop_spmds’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [12s/12s] OK
* checking examples with --run-donttest ... [192s/192s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [0s/0s] OK
* checking PDF version of manual ... [6s/5s] OK
* checking HTML version of manual ... [0s/0s] NOTE
Skipping checking HTML validation: no command 'tidy' found
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 WARNINGs, 1 NOTE
See
  ‘/srv/rf/building/build_2024-03-15-18-44/RF_PKG_CHECK/PKGS/stops.Rcheck/00check.log’
for details.


Run time: 329.86 seconds.