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kmBlockTest log file (check_x86_64_linux)

Wed Jun  1 12:32:42 2022: Checking package kmBlockTest (SVN revision 359) ...
* using log directory ‘/srv/rf/building/build_2022-06-01-12-31/RF_PKG_CHECK/PKGS/kmBlockTest.Rcheck’
* using R version 4.2.0 Patched (2022-05-30 r82436)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘kmBlockTest/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘kmBlockTest’ version ‘0.0.2.9001’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Aleš Žiberna ’

New submission

Version contains large components (0.0.2.9001)

The Title field should be in title case. Current version is:
‘k-means like blockmodeling of one-mode and linked networks’
In title case that is:
‘k-Means Like Blockmodeling of One-Mode and Linked Networks’

The Description field should start with a capital letter.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory ‘src’ contains:
  main.cpp_Backup
These are unlikely file names for src files.
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘kmBlockTest’ can be installed ... [16s/16s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' import not declared from: ‘blockmodeling’
'library' or 'require' calls not declared from:
  ‘doParallel’ ‘doRNG’ ‘parallel’
'library' or 'require' calls in package code:
  ‘doParallel’ ‘doRNG’ ‘parallel’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unavailable namespace imported from by a ':::' call: ‘blockmodeling’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/4s] NOTE
kmBlockORPC: no visible binding for global variable ‘genRandomPar’
kmBlockORPC: no visible binding for global variable ‘rand2’
kmBlockORPC : : no visible global function definition for
  ‘rand2’
kmBlockORPC: no visible global function definition for ‘na.omit’
kmBlockORPC: no visible global function definition for ‘ss’
kmBlockORPC: no visible global function definition for ‘detectCores’
kmBlockORPC: no visible binding for global variable ‘fun.by.blocks’
kmBlockORPC: no visible global function definition for ‘makeCluster’
kmBlockORPC: no visible global function definition for
  ‘clusterSetRNGStream’
kmBlockORPC: no visible global function definition for ‘clusterExport’
kmBlockORPC: no visible global function definition for ‘clusterEvalQ’
kmBlockORPC: no visible global function definition for ‘parLapplyLB’
kmBlockORPC: no visible global function definition for ‘stopCluster’
kmBlockORPC: no visible global function definition for
  ‘getDoParRegistered’
kmBlockORPC: no visible global function definition for
  ‘getDoParWorkers’
kmBlockORPC: no visible global function definition for
  ‘registerDoParallel’
kmBlockORPC: no visible global function definition for ‘%dorng%’
kmBlockORPC: no visible global function definition for ‘foreach’
kmBlockORPC: no visible global function definition for ‘registerDoSEQ’
Undefined global functions or variables:
  %dorng% clusterEvalQ clusterExport clusterSetRNGStream detectCores
  foreach fun.by.blocks genRandomPar getDoParRegistered getDoParWorkers
  makeCluster na.omit parLapplyLB rand2 registerDoParallel
  registerDoSEQ ss stopCluster
Consider adding
  importFrom("stats", "na.omit")
to your NAMESPACE file.

Found if() conditions comparing class() to string:
File ‘kmBlockTest/R/kmBlock.r’: if (class(tres) == "try-error") ...
Use inherits() (or maybe is()) instead.
* checking Rd files ... [0s/0s] NOTE
prepare_Rd: kmBlockTest-package.Rd:33-35: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Unknown package ‘’ in Rd xrefs
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘critFunKmeans’ ‘critFunction’ ‘kmBlockC’ ‘kmBlockORPC’
  ‘meanByBlocks’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* skipping checking HTML version of manual: no command ‘tidy’ found
* checking for code which exercises the package ... WARNING
No examples, no tests, no vignettes
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 4 WARNINGs, 5 NOTEs
See
  ‘/srv/rf/building/build_2022-06-01-12-31/RF_PKG_CHECK/PKGS/kmBlockTest.Rcheck/00check.log’
for details.


Run time: 44.64 seconds.