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multcomp log file (check_x86_64_windows)
* using log directory 'R:/run/building/build_2025-10-19-16-23/RF_PKG_CHECK/PKGS/multcomp.Rcheck'
* using R version 4.5.0 Patched (2025-05-30 r88253 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: Windows 10 x64 (build 19045)
* using session charset: UTF-8
* using option '--as-cran'
* checking for file 'multcomp/DESCRIPTION' ... OK
* this is package 'multcomp' version '1.4-29'
* checking CRAN incoming feasibility ... [11s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'multcomp' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking sizes of PDF files under 'inst/doc' ... NOTE
Unable to find GhostScript executable to run checks on size reduction
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [21s] OK
* checking differences from 'multcomp-Ex.Rout' to 'multcomp-Ex.Rout.save' ... NOTE
519c519
< + amod_glht <- glht(amod, mcp(PE = "Tukey"), vcov. = vcovHC)
---
> + amod_glht <- glht(amod, mcp(PE = "Tukey"), vcov = vcovHC)
758c758
< Quantile = 2.3427
---
> Quantile = 2.3437
764,766c764,766
< M - L == 0 1.1971 -0.2329 2.6270
< H - L == 0 2.1614 0.6769 3.6460
< H - M == 0 0.9644 -0.4291 2.3579
---
> M - L == 0 1.1969 -0.2336 2.6275
> H - L == 0 2.1613 0.6761 3.6464
> H - M == 0 0.9643 -0.4297 2.3584
1037c1037
< + length.out = 10)
---
> + length = 10)
1139c1139
< + alternative = "greater", vcov. = sandwich)
---
> + alternative = "greater", vcov = sandwich)
1424c1424
< + mlf("groupB = 0"), vcov. = sandwich))
---
> + mlf("groupB = 0"), vcov = sandwich))
1585,1588d1584
< Warning in Matrix.DeprecatedCoerce(cd1, cd2) :
< 'as(, "dpoMatrix")' is deprecated.
< Use 'as(as(as(., "dMatrix"), "posdefMatrix"), "unpackedMatrix")' instead.
< See help("Deprecated") and help("Matrix-deprecated").
* checking for unstated dependencies in 'demo' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'bugfix.R'
Comparing 'bugfix.Rout' to 'bugfix.Rout.save' ... OK
Running 'regtest-Tukey.R'
Comparing 'regtest-Tukey.Rout' to 'regtest-Tukey.Rout.save' ... OK
Running 'regtest-anova.R'
Comparing 'regtest-anova.Rout' to 'regtest-anova.Rout.save' ... OK
Running 'regtest-fixest.R'
Running 'regtest-interface-extended.R'
Comparing 'regtest-interface-extended.Rout' to 'regtest-interface-extended.Rout.save' ... OK
Running 'regtest-interface.R'
Comparing 'regtest-interface.Rout' to 'regtest-interface.Rout.save' ... OK
Running 'regtest-lme.R'
Comparing 'regtest-lme.Rout' to 'regtest-lme.Rout.save' ...67,71d66
< Warning message:
< In Matrix.DeprecatedCoerce(cd1, cd2) :
< 'as(, "dpoMatrix")' is deprecated.
< Use 'as(as(as(., "dMatrix"), "posdefMatrix"), "unpackedMatrix")' instead.
< See help("Deprecated") and help("Matrix-deprecated").
Running 'regtest-mmm.R'
Comparing 'regtest-mmm.Rout' to 'regtest-mmm.Rout.save' ... OK
Running 'regtest-survival.R'
Comparing 'regtest-survival.Rout' to 'regtest-survival.Rout.save' ... OK
[22s] NOTE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [59s] OK
* checking PDF version of manual ... [10s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs
See
'R:/run/building/build_2025-10-19-16-23/RF_PKG_CHECK/PKGS/multcomp.Rcheck/00check.log'
for details.
Run time: 199.91 seconds.
