R Development Page

CALIBERdrugdose log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2024-06-06-17-24/RF_PKG_CHECK/PKGS/CALIBERdrugdose.Rcheck'
* using R version 4.4.0 Patched (2024-06-01 r86665 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows 10 x64 (build 19045)
* using session charset: UTF-8
* using option '--as-cran'
* checking for file 'CALIBERdrugdose/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CALIBERdrugdose' version '0.1-5'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Anoop Shah '

New submission

The Title field should be in title case. Current version is:
'Extract Drug Dose From Unstructured Dosage Text'
In title case that is:
'Extract Drug Dose from Unstructured Dosage Text'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'CALIBERdrugdose' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
export:
  function(x, ...)
export.drugdose_patterns:
  function(x, filename)

export:
  function(x, ...)
export.drugdose_multiwords:
  function(x, filename)

export:
  function(x, ...)
export.drugdose_lookups:
  function(x, filename)

export:
  function(x, ...)
export.drugdose_singlewords:
  function(x, filename)

addterm:
  function(x, ...)
addterm.drugdose_lookups:
  function(x, textid, text, qty, units, freq, tot, max, time, change,
           choice, duration, daily_dose)

addterm:
  function(x, ...)
addterm.drugdose_singlewords:
  function(x, words, replacement)

addterm:
  function(x, ...)
addterm.drugdose_patterns:
  function(x, order, words, qty, units, freq, tot, priority, max, time,
           change, choice, doubledose, duration, category, comment)

addterm:
  function(x, ...)
addterm.drugdose_multiwords:
  function(x, order, words, replacement, comment)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
addterm.drugdose_lookups: no visible binding for global variable
  'words'
doseconvert : analysis: no visible global function definition for '.'
doseconvert: no visible binding for global variable 'i.textid'
Undefined global functions or variables:
  . i.textid words
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... WARNING
  Warning: found non-ASCII string
  'delete anything after <80><98>keep<80><99> (e.g. please keep xxx, to keep skin dry)' in object 'multiwords'
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'R:/run/building/build_2024-06-06-17-24/RF_PKG_CHECK/PKGS/CALIBERdrugdose.Rcheck/00check.log'
for details.

Run time: 50.53 seconds.