R Development Page

CALIBERrfimpute log file (check_x86_64_linux)

Mon Feb 23 14:05:57 2026: Checking package CALIBERrfimpute (SVN revision 73) ...
* using log directory ‘/srv/rf/building/build_2026-02-23-14-04/RF_PKG_CHECK/PKGS/CALIBERrfimpute.Rcheck’
* using R version 4.5.2 Patched (2026-02-22 r89452)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘CALIBERrfimpute/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CALIBERrfimpute’ version ‘1.0-8’
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Anoop Shah ’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘CALIBERrfimpute-package.Rd’:
    https://doi.org/10.1093/aje/kwt312
    https://doi.org/10.1016/j.csda.2013.10.025
  File ‘mice.impute.rfcat.Rd’:
    https://doi.org/10.1093/aje/kwt312
  File ‘mice.impute.rfcont.Rd’:
    https://doi.org/10.1093/aje/kwt312
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘CALIBERrfimpute’ can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... NOTE
unable to verify current time
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘cran-comments.md’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
 WARNING
‘qpdf’ is needed for checks on size reduction of PDFs
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [6s/5s] OK
* checking PDF version of manual ... [1s/1s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/srv/rf/building/build_2026-02-23-14-04/RF_PKG_CHECK/PKGS/CALIBERrfimpute.Rcheck/00check.log’
for details.

Run time: 80.12 seconds.