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LDExplorer log file (build_win64)
Mon Nov 25 15:02:45 2013: Building binary for package LDExplorer (SVN revision 59)
using R version 3.0.2 Patched (2013-11-22 r64286) ...
* installing to library 'R:/lib/local/3.0'
* installing *source* package 'LDExplorer' ...
** libs
*** arch - i386
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -fopenmp -O2 -Wall -mtune=core2 -c LDExplorer.cpp -o LDExplorer.o
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/auxiliary'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/auxiliary'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/exception'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/exception'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/zlib'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/zlib'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/reader'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/reader'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/writer'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/writer'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/db'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/db'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/algorithms'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/algorithms'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/auxiliary'
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c auxiliary.cpp -o auxiliary.o
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/auxiliary'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/exception'
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Exception.cpp -o Exception.o
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/exception'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/zlib'
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c adler32.c -o adler32.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c compress.c -o compress.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c crc32.c -o crc32.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c deflate.c -o deflate.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c gzclose.c -o gzclose.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c gzlib.c -o gzlib.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c gzread.c -o gzread.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c gzwrite.c -o gzwrite.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c infback.c -o infback.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c inffast.c -o inffast.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c inflate.c -o inflate.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c inftrees.c -o inftrees.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c trees.c -o trees.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c uncompr.c -o uncompr.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O3 -Wall -std=gnu99 -mtune=core2 -c zutil.c -o zutil.o
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/zlib'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/reader'
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Reader.cpp -o Reader.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c TextReader.cpp -o TextReader.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c GzipReader.cpp -o GzipReader.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c ReaderFactory.cpp -o ReaderFactory.o
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/reader'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/writer'
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Writer.cpp -o Writer.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c TextWriter.cpp -o TextWriter.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c GzipWriter.cpp -o GzipWriter.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c WriterFactory.cpp -o WriterFactory.o
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/writer'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/db'
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Unique.cpp -o Unique.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c DbView.cpp -o DbView.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Db.cpp -o Db.o
Db.cpp: In member function 'const DbView* Db::create_view(double, long unsigned int, long unsigned int)':
Db.cpp:1687:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/db'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/algorithms'
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c CI.cpp -o CI.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c CIWP.cpp -o CIWP.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c CIAV.cpp -o CIAV.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c CIFactory.cpp -o CIFactory.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Algorithm.cpp -o Algorithm.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c AlgorithmMIG.cpp -o AlgorithmMIG.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c AlgorithmMIGP.cpp -o AlgorithmMIGP.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c AlgorithmMIGPP.cpp -o AlgorithmMIGPP.o
AlgorithmMIGPP.cpp: In member function 'virtual void AlgorithmMIGPP::compute_preliminary_blocks()':
AlgorithmMIGPP.cpp:106:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
AlgorithmMIGPP.cpp:120:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
AlgorithmMIGPP.cpp:211:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
AlgorithmMIGPP.cpp: In member function 'virtual void AlgorithmMIGPP::compute_preliminary_blocks_rsq()':
AlgorithmMIGPP.cpp:313:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
AlgorithmMIGPP.cpp:327:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
AlgorithmMIGPP.cpp:417:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c AlgorithmFactory.cpp -o AlgorithmFactory.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Partition.cpp -o Partition.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c LD.cpp -o LD.o
LD.cpp: In member function 'void LD::compute_ld(const char*, const char*, unsigned int, bool)':
LD.cpp:188:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
LD.cpp:204:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
LD.cpp:227:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
LD.cpp:243:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
LD.cpp:266:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
LD.cpp:282:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
LD.cpp: In member function 'bool LD::lookup_db_by_marker(LD::marker_index_entry*, unsigned int*, unsigned int*)':
LD.cpp:328:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-i386/algorithms'
R:\base\Rtools\gcc-4.6.3\bin\nm.exe: 'applibs': No such file
g++ -m32 -shared -s -static-libgcc -o LDExplorer.dll tmp.def LDExplorer.o auxiliary/auxiliary.o exception/Exception.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o reader/GzipReader.o reader/Reader.o reader/ReaderFactory.o reader/TextReader.o writer/GzipWriter.o writer/TextWriter.o writer/Writer.o writer/WriterFactory.o db/Db.o db/DbView.o db/Unique.o algorithms/Algorithm.o algorithms/AlgorithmFactory.o algorithms/AlgorithmMIG.o algorithms/AlgorithmMIGP.o algorithms/AlgorithmMIGPP.o algorithms/CI.o algorithms/CIAV.o algorithms/CIFactory.o algorithms/CIWP.o algorithms/LD.o algorithms/Partition.o -fopenmp -fopenmp -LR:/base/local215/lib/i386 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/i386 -lR
installing to R:/lib/local/3.0/LDExplorer/libs/i386
*** arch - x64
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -fopenmp -O2 -Wall -mtune=core2 -c LDExplorer.cpp -o LDExplorer.o
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/auxiliary'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/auxiliary'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/exception'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/exception'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/zlib'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/zlib'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/reader'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/reader'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/writer'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/writer'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/db'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/db'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/algorithms'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/algorithms'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/auxiliary'
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c auxiliary.cpp -o auxiliary.o
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/auxiliary'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/exception'
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Exception.cpp -o Exception.o
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/exception'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/zlib'
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c adler32.c -o adler32.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c compress.c -o compress.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c crc32.c -o crc32.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c deflate.c -o deflate.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c gzclose.c -o gzclose.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c gzlib.c -o gzlib.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c gzread.c -o gzread.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c gzwrite.c -o gzwrite.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c infback.c -o infback.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c inffast.c -o inffast.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c inflate.c -o inflate.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c inftrees.c -o inftrees.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c trees.c -o trees.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c uncompr.c -o uncompr.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -DNO_VIZ -fopenmp -O2 -Wall -std=gnu99 -mtune=core2 -c zutil.c -o zutil.o
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/zlib'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/reader'
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Reader.cpp -o Reader.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c TextReader.cpp -o TextReader.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c GzipReader.cpp -o GzipReader.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c ReaderFactory.cpp -o ReaderFactory.o
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/reader'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/writer'
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Writer.cpp -o Writer.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c TextWriter.cpp -o TextWriter.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c GzipWriter.cpp -o GzipWriter.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c WriterFactory.cpp -o WriterFactory.o
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/writer'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/db'
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Unique.cpp -o Unique.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c DbView.cpp -o DbView.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Db.cpp -o Db.o
Db.cpp: In member function 'const DbView* Db::create_view(double, long unsigned int, long unsigned int)':
Db.cpp:1687:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/db'
make[1]: Entering directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/algorithms'
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c CI.cpp -o CI.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c CIWP.cpp -o CIWP.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c CIAV.cpp -o CIAV.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c CIFactory.cpp -o CIFactory.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Algorithm.cpp -o Algorithm.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c AlgorithmMIG.cpp -o AlgorithmMIG.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c AlgorithmMIGP.cpp -o AlgorithmMIGP.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c AlgorithmMIGPP.cpp -o AlgorithmMIGPP.o
AlgorithmMIGPP.cpp: In member function 'virtual void AlgorithmMIGPP::compute_preliminary_blocks()':
AlgorithmMIGPP.cpp:106:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
AlgorithmMIGPP.cpp:120:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
AlgorithmMIGPP.cpp:211:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
AlgorithmMIGPP.cpp: In member function 'virtual void AlgorithmMIGPP::compute_preliminary_blocks_rsq()':
AlgorithmMIGPP.cpp:313:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
AlgorithmMIGPP.cpp:327:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
AlgorithmMIGPP.cpp:417:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c AlgorithmFactory.cpp -o AlgorithmFactory.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c Partition.cpp -o Partition.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -fopenmp -O2 -Wall -mtune=core2 -c LD.cpp -o LD.o
LD.cpp: In member function 'void LD::compute_ld(const char*, const char*, unsigned int, bool)':
LD.cpp:188:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
LD.cpp:204:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
LD.cpp:227:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
LD.cpp:243:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
LD.cpp:266:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
LD.cpp:282:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
LD.cpp: In member function 'bool LD::lookup_db_by_marker(LD::marker_index_entry*, unsigned int*, unsigned int*)':
LD.cpp:328:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpkpmqCL/R.INSTALL9fc4b9e7c18/LDExplorer/src-x64/algorithms'
R:\base\Rtools\gcc-4.6.3\bin\nm.exe: 'applibs': No such file
g++ -m64 -shared -s -static-libgcc -o LDExplorer.dll tmp.def LDExplorer.o auxiliary/auxiliary.o exception/Exception.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o reader/GzipReader.o reader/Reader.o reader/ReaderFactory.o reader/TextReader.o writer/GzipWriter.o writer/TextWriter.o writer/Writer.o writer/WriterFactory.o db/Db.o db/DbView.o db/Unique.o algorithms/Algorithm.o algorithms/AlgorithmFactory.o algorithms/AlgorithmMIG.o algorithms/AlgorithmMIGP.o algorithms/AlgorithmMIGPP.o algorithms/CI.o algorithms/CIAV.o algorithms/CIFactory.o algorithms/CIWP.o algorithms/LD.o algorithms/Partition.o -fopenmp -fopenmp -LR:/base/local215/lib/x64 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/x64 -lR
installing to R:/lib/local/3.0/LDExplorer/libs/x64
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* MD5 sums
packaged installation of 'LDExplorer' as LDExplorer_1.0.3.zip
* DONE (LDExplorer)
Run time: 55.87 seconds.
