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ghyp log file (check_x86_64_linux)

Tue Apr 22 22:01:01 2014: Checking package ghyp (SVN revision 5828) ...
* using log directory ‘/mnt/building/build_2014-04-22-16-20/RF_PKG_CHECK/PKGS/ghyp.Rcheck’
* using R version 3.1.0 Patched (2014-04-21 r65431)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘ghyp/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ghyp’ version ‘1.5.6’
* package encoding: latin1
* checking CRAN incoming feasibility ... WARNING
Maintainer: ‘David Luethi ’
Insufficient package version (submitted: 1.5.6, existing: 1.5.6)
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ghyp’ can be installed ... [4s/8s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘Fixme’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘gplots’ ‘numDeriv’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... WARNING
  ‘gs+qpdf’ made some significant size reductions:
     compacted ‘Generalized_Hyperbolic_Distribution.pdf’ from 706Kb to 450Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [28s/57s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
portfolio.optimize 7.757  0.008  15.808
stepAIC.ghyp       2.948  0.008   5.990
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
   ‘Generalized_Hyperbolic_Distribution.Rnw’ ... [5s/9s] OK
 [5s/9s] OK
* checking re-building of vignette outputs ... [7s/19s] OK
* checking PDF version of manual ... OK

WARNING: There were 2 warnings.
NOTE: There were 3 notes.
See
  ‘/mnt/building/build_2014-04-22-16-20/RF_PKG_CHECK/PKGS/ghyp.Rcheck/00check.log’
for details.

Run time: 235.51 seconds.

Additional Logs:   00install.out
Thanks to:
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