R Development Page

admbsecr log file (check_x86_64_linux)

Tue Nov 10 09:57:59 2015: Checking package admbsecr (SVN revision 34) ...
* using log directory ‘/mnt/building/build_2015-11-10-09-29/RF_PKG_CHECK/PKGS/admbsecr.Rcheck’
* using R version 3.2.2 Patched (2015-11-06 r69607)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘admbsecr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘admbsecr’ version ‘1.0.6’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Ben Stevenson ’
New submission

The Title field should be in title case, current version then in title case:
‘SECR models with supplementary location information’
‘SECR Models with Supplementary Location Information’

The Description field should not start with the package name,
  'This package' or similar.

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... WARNING
Found the following executable files:
  inst/ADMB/bin/linux/secr
  inst/ADMB/bin/linux/secr_new
  inst/ADMB/bin/mac/secr
  inst/ADMB/bin/windows/secr.exe
Source packages should not contain undeclared executable files.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘admbsecr’ can be installed ... [17s/17s] OK
* checking installed package size ... NOTE
  installed size is 31.0Mb
  sub-directories of 1Mb or more:
    ADMB  30.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘BinaryFiles’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘parallel’ ‘testthat’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
boot.admbsecr: no visible global function definition for ‘detectCores’
boot.admbsecr: no visible global function definition for ‘makeCluster’
boot.admbsecr: no visible global function definition for ‘clusterEvalQ’
boot.admbsecr: no visible global function definition for ‘parSapplyLB’
boot.admbsecr: no visible global function definition for ‘stopCluster’
test.admbsecr: no visible global function definition for ‘test_dir’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'show.detfn.Rd':
  \examples lines wider than 100 characters:
     legend("topright", legend = c("Half normal", "Hazard rate"), lty = 1, col = c("black", "blue"), bg = "white")

Rd file 'sim.capt.Rd':
  \examples lines wider than 100 characters:
     new.capt <- sim.capt(traps = example$traps, mask = example$mask, infotypes = c("bearing", "dist"), detfn = "hr",

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... [11s/11s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 7 NOTEs
See
  ‘/mnt/building/build_2015-11-10-09-29/RF_PKG_CHECK/PKGS/admbsecr.Rcheck/00check.log’
for details.


Run time: 123.69 seconds.