R Development Page

utilsag log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2013-12-11-00-09/RF_PKG_CHECK/PKGS/utilsag.Rcheck'
* using R version 3.0.2 Patched (2013-12-06 r64409)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'utilsag/DESCRIPTION' ... OK
* this is package 'utilsag' version '0.0.3'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Andrzej Galecki '
New submission
Possibly mis-spelled fields in DESCRIPTION:
  'Revision'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'utilsag' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  GPL (version 2 or later)
Standardizable: TRUE
Standardized license specification:
  GPL (>= 2)
* checking top-level files ... NOTE
File
  inst/LICENCE
will install at top-level and is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
lme.formula: no visible global function definition for 'pdSymm'
lme.formula: no visible global function definition for 'reStruct'
lme.formula: no visible global function definition for
  'getGroupsFormula'
lme.formula: no visible global function definition for 'splitFormula'
lme.formula: no visible global function definition for 'c_deparse'
lme.formula: no visible global function definition for
  'getCovariateFormula'
lme.formula: no visible global function definition for 'lmeStruct'
lme.formula: no visible global function definition for 'varFunc'
lme.formula: no visible global function definition for 'asOneFormula'
lme.formula: no visible global function definition for 'getGroups'
lme.formula: no visible global function definition for 'Names<-'
lme.formula: no visible global function definition for 'Names'
lme.formula: no visible global function definition for 'MEdims'
lme.formula: no visible global function definition for 'getFixDF'
lme.formula: no visible global function definition for 'Initialize'
lme.formula: no visible global function definition for 'MEdecomp'
lme.formula: no visible global function definition for 'coef<-'
lme.formula: no visible global function definition for 'MEestimate'
lme.formula: no visible global function definition for 'needUpdate'
lme.formula: no visible global function definition for 'varWeights'
lme.formula: no visible global function definition for 'lmeApVar'
lme.formula: no visible binding for global variable 'lmeStObj'
lmeControl: no visible binding for global variable 'lmeScale'
traceRlist1: no visible binding for global variable '.traceRlist'

Found the following assignments to the global environment:
File 'utilsag/R/traceFunction.R':
  assign(".traceRlist", c(.traceRlist, objL), envir = .GlobalEnv)
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'univariateStats' 'utraceRinit' 'utraceRlist' 'utraceRprint'
  'write.Rd'
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking examples ... NONE
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'trace.R'
  Running 'univariateStats.R'
  Running 'writeDataRd.R'
 OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 4 notes.
See
  'R:/run/building/build_2013-12-11-00-09/RF_PKG_CHECK/PKGS/utilsag.Rcheck/00check.log'
for details.

Run time: 25.16 seconds.