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Rsocialdata0 log file (check_x86_64_linux)

Tue May  6 16:16:01 2014: Checking package Rsocialdata0 (SVN revision 151) ...
* using log directory ‘/mnt/building/build_2014-05-06-16-04/RF_PKG_CHECK/PKGS/Rsocialdata0.Rcheck’
* using R version 3.1.0 Patched (2014-05-05 r65530)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘Rsocialdata0/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rsocialdata0’ version ‘0.0.1.0’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Emmanuel Rousseaux ’
New submission
Vignette sources in 'inst/doc' with no 'vignettes' directory:
  ‘Dataset-vignette-overview.Rnw’
A 'vignettes' directory is required as from R 3.1.0
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped

Package suggested but not available for checking: ‘CHAID’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rsocialdata0’ can be installed ... [4s/6s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... WARNING
Found the following file with non-ASCII characters:
  tree.R
Portable packages must use only ASCII characters in their R code,
except perhaps in comments.
Use \uxxxx escapes for other characters.
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' import not declared from: ‘Dataset’
'library' or 'require' call not declared from: ‘partykit’
Unavailable namespace imported from by a ':::' call: ‘Dataset’
  See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... WARNING
merge:
  function(x, y, ...)
merge.row:
  function(x, y)

seq:
  function(...)
seq.count:
  function(x, value, sequence, origin, window.start, window.end,
           translate, verbose, quiet)

str:
  function(object, ...)
str.capitalize:
  function(x, all)

str:
  function(object, ...)
str.names:
  function(x, parenthesis, sep)

str:
  function(object, ...)
str.typevar:
  function(x, short, parenthesis)

See section ‘Generic functions and methods’ of the ‘Writing R
Extensions’ manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .Last.lib will not be used unless it is exported

GK.tau: warning in pchisq(U.tau.CR, df = (dat.rows - 1) * (dat.cols -
  1), lower = FALSE): partial argument match of 'lower' to 'lower.tail'
GK.tau: warning in pchisq(U.tau.RC, df = (dat.rows - 1) * (dat.cols -
  1), lower = FALSE): partial argument match of 'lower' to 'lower.tail'
get.spss.folder: no visible binding for global variable
  ‘timefixed.variables’
node_barplot_round: no visible global function definition for ‘gpar’
node_barplot_round: no visible global function definition for
  ‘nodeapply’
node_barplot_round: no visible global function definition for ‘nodeids’
node_barplot_round : rval: no visible global function definition for
  ‘id_node’
node_barplot_round : rval: no visible global function definition for
  ‘viewport’
node_barplot_round : rval: no visible global function definition for
  ‘grid.layout’
node_barplot_round : rval: no visible global function definition for
  ‘unit’
node_barplot_round : rval: no visible global function definition for
  ‘pushViewport’
node_barplot_round : rval: no visible global function definition for
  ‘grid.rect’
node_barplot_round : rval: no visible global function definition for
  ‘gpar’
node_barplot_round : rval: no visible global function definition for
  ‘grid.text’
node_barplot_round : rval: no visible global function definition for
  ‘popViewport’
node_barplot_round : rval: no visible global function definition for
  ‘grid.xaxis’
node_barplot_round : rval: no visible global function definition for
  ‘grid.yaxis’
node_barplot_round : rval: no visible global function definition for
  ‘upViewport’
node_barplot_round_inner: no visible global function definition for
  ‘gpar’
node_barplot_round_inner : extract_label: no visible global function
  definition for ‘is.terminal’
node_barplot_round_inner : extract_label: no visible global function
  definition for ‘character_split’
node_barplot_round_inner : extract_label: no visible global function
  definition for ‘split_node’
node_barplot_round_inner: no visible global function definition for
  ‘nodeapply’
node_barplot_round_inner: no visible global function definition for
  ‘nodeids’
node_barplot_round_inner : rval: no visible global function definition
  for ‘id_node’
node_barplot_round_inner : rval: no visible global function definition
  for ‘viewport’
node_barplot_round_inner : rval: no visible global function definition
  for ‘grid.layout’
node_barplot_round_inner : rval: no visible global function definition
  for ‘unit’
node_barplot_round_inner : rval: no visible global function definition
  for ‘pushViewport’
node_barplot_round_inner : rval: no visible global function definition
  for ‘grid.rect’
node_barplot_round_inner : rval: no visible global function definition
  for ‘gpar’
node_barplot_round_inner : rval: no visible global function definition
  for ‘grid.text’
node_barplot_round_inner : rval: no visible global function definition
  for ‘popViewport’
node_barplot_round_inner : rval: no visible global function definition
  for ‘grid.xaxis’
node_barplot_round_inner : rval: no visible global function definition
  for ‘grid.yaxis’
node_barplot_round_inner : rval: no visible global function definition
  for ‘upViewport’
reglog: no visible binding for global variable ‘....weights125678’
table: no visible global function definition for ‘list.names’
tree.height: no visible global function definition for ‘depth’
tree.learn.cart: no visible global function definition for ‘as.party’
tree.learn.cart: no visible global function definition for ‘depth’
tree.learn.cart: no visible global function definition for ‘party’
tree.learn.chaid: no visible global function definition for
  ‘chaid_control’
tree.learn.chaid: no visible global function definition for ‘depth’
tree.width: no visible global function definition for ‘width’
frequencies,QuantitativeVariable-ANY: no visible binding for global
  variable ‘breaks.max’
merge,Dataset-Dataset: no visible binding for global variable ‘out’
table,ANY: no visible global function definition for ‘list.names’
* checking Rd files ... WARNING
prepare_Rd: class-summary.Statdf.Rd:17-19: Dropping empty section \description
prepare_Rd: class-summary.Statdf.Rd:58-60: Dropping empty section \note
prepare_Rd: class-summary.Statdf.Rd:55-57: Dropping empty section \author
prepare_Rd: class-summary.Statdf.Rd:52-54: Dropping empty section \references
prepare_Rd: class-summary.Statdf.Rd:64-67: Dropping empty section \seealso
checkRd: (5) class-summary.Statdf.Rd:0-72: Must have a \description
prepare_Rd: exportPDF.Rd:121-123: Dropping empty section \seealso
prepare_Rd: method-description.Rd:22-25: Dropping empty section ‘Examples’
prepare_Rd: method-recode.Rd:41-50: Dropping empty section \examples
prepare_Rd: package-Rsocialdata0.Rd:51-53: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'find.value.fun.Rd':
  \examples lines wider than 100 characters:
       'health99' = factor(c('very well',NA,NA,NA,NA), levels = c("poor", "well", "very well")), # we specify the order of levels to use in  ... [TRUNCATED]
     # we retrieve the last occurence of the higher value for unemployment, and get corresponding values for the variables age, education an ... [TRUNCATED]
     # we retrieve the last occurence of the higher value for health, and get corresponding values for the variables unemployment, age and e ... [TRUNCATED]

Rd file 'find.value.last.Rd':
  \examples lines wider than 100 characters:
     # we retrieve the last occurence of the value 1 for unemployment, and get corresponding values for the variables age and education

Rd file 'findlast.Rd':
  \examples lines wider than 100 characters:
     # we retrieve the last value for age, and get corresponding values for the variables sex and nationality

Rd file 'seq.count.Rd':
  \examples lines wider than 100 characters:
       sequence = c("vuln.2000","vuln.2001","vuln.2002","vuln.2003","vuln.2004","vuln.2005","vuln.2006","vuln.2007","vuln.2008","vuln.2009", ... [TRUNCATED]
       sequence = c("vuln.2000","vuln.2001","vuln.2002","vuln.2003","vuln.2004","vuln.2005","vuln.2006","vuln.2007","vuln.2008","vuln.2009", ... [TRUNCATED]
       sequence = c("vuln.2000","vuln.2001","vuln.2002","vuln.2003","vuln.2004","vuln.2005","vuln.2006","vuln.2007","vuln.2008","vuln.2009", ... [TRUNCATED]
       sequence = c("vuln.2000","vuln.2001","vuln.2002","vuln.2003","vuln.2004","vuln.2005","vuln.2006","vuln.2007","vuln.2008","vuln.2009", ... [TRUNCATED]
       sequence = c("vuln.2000","vuln.2001","vuln.2002","vuln.2003","vuln.2004","vuln.2005","vuln.2006","vuln.2007","vuln.2008","vuln.2009", ... [TRUNCATED]
       sequence = c("vuln.2000","vuln.2001","vuln.2002","vuln.2003","vuln.2004","vuln.2005","vuln.2006","vuln.2007","vuln.2008","vuln.2009", ... [TRUNCATED]
       sequence = c("vuln.2000","vuln.2001","vuln.2002","vuln.2003","vuln.2004","vuln.2005","vuln.2006","vuln.2007","vuln.2008","vuln.2009", ... [TRUNCATED]
       sequence = c("vuln.2000","vuln.2001","vuln.2002","vuln.2003","vuln.2004","vuln.2005","vuln.2006","vuln.2007","vuln.2008","vuln.2009", ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'bivan.Rd':
  ‘Statdf’

Missing link or links in documentation object 'exportPDF.Rd':
  ‘Statdf’

See the information in section 'Cross-references' of the 'Writing R
Extensions' manual.

* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘Dataset.globalenv.print.io’ ‘Dataset.version’ ‘Variable.version’
  ‘allmissings’ ‘allvalids’ ‘allvalues’ ‘as.Dataset’ ‘as.missing’
  ‘as.valid’ ‘binaries’ ‘bvar’ ‘checkvars<-’ ‘codes’ ‘codes<-’ ‘cvar’
  ‘dataset’ ‘db.author’ ‘db.author<-’ ‘db.citation’ ‘db.citation<-’
  ‘db.contact.email’ ‘db.contact.email<-’ ‘db.details’ ‘db.details<-’
  ‘db.license’ ‘db.license<-’ ‘db.manager’ ‘db.manager<-’
  ‘db.release.date’ ‘db.release.date<-’ ‘db.website’ ‘db.website<-’
  ‘description<-’ ‘distrib’ ‘expected’ ‘export’ ‘exportTAB’ ‘format<-’
  ‘formatc’ ‘formatc<-’ ‘frequencies’ ‘gchart.map’ ‘get.spss.folder’
  ‘global’ ‘infos’ ‘is.binary’ ‘is.nominal’ ‘is.nominal.exact’
  ‘is.ordinal’ ‘is.qualitative’ ‘is.quantitative’ ‘is.scale’
  ‘is.scale.exact’ ‘is.time’ ‘is.weighted’ ‘is.weighting’ ‘merge.row’
  ‘missing.add’ ‘missing.gen.candidate’ ‘missings’ ‘missings<-’ ‘na’
  ‘na<-’ ‘name’ ‘name<-’ ‘nan’ ‘nan<-’ ‘nbinaries’ ‘nindividual’
  ‘nmissings’ ‘nnominals’ ‘nnominals.exact’ ‘nominals’ ‘nominals.exact’
  ‘nordinals’ ‘nquantitatives’ ‘nscales’ ‘nscales.exact’ ‘ntimes’
  ‘nvalids’ ‘nvalues’ ‘nvar’ ‘nvariable’ ‘nweightings’ ‘observed’
  ‘only.complete’ ‘openPDF’ ‘ordinals’ ‘origin’ ‘origin<-’ ‘ovar’
  ‘pdflatex’ ‘predictors’ ‘pvalues’ ‘pvalues<-’ ‘qualitatives’
  ‘quantitatives’ ‘reglog’ ‘rename’ ‘scales’ ‘scales.exact’ ‘sdf’
  ‘sdf<-’ ‘spatial’ ‘spatial.country’ ‘spatial.country<-’
  ‘spatial.variable’ ‘spatial.variable<-’ ‘spatial<-’ ‘spssToDataset’
  ‘statdf’ ‘std.res’ ‘str.capitalize’ ‘str.names’ ‘str.typevar’ ‘svar’
  ‘target’ ‘thresholds’ ‘thresholds<-’ ‘times’ ‘tree.control’
  ‘tree.height’ ‘tree.learn.cart’ ‘tree.learn.chaid’ ‘tree.length’
  ‘tree.predict’ ‘tree.target’ ‘tree.where’ ‘tree.width’ ‘tvar’ ‘v’
  ‘valid’ ‘valid.gen.candidate’ ‘valids’ ‘valids.ordering’
  ‘valids.permut’ ‘valids.reverse’ ‘valids<-’ ‘value’ ‘values’
  ‘variables’ ‘variables<-’ ‘weighting<-’ ‘weights<-’ ‘wvar’
Undocumented S4 classes:
  ‘BinaryVariable’ ‘Bivan’ ‘CategoricalVariable’ ‘Dataset’
  ‘NominalVariable’ ‘OrdinalVariable’ ‘QuantitativeVariable’ ‘RegLog’
  ‘ScaleVariable’ ‘Statdf’ ‘TimestampVariable’ ‘Tree.control’
  ‘Variable’ ‘WeightingVariable’
Undocumented S4 methods:
  generic '$' and siglist 'Dataset'
  generic '$<-' and siglist 'Dataset'
  generic 'Arith' and siglist
    'QuantitativeVariable,QuantitativeVariable'
  generic 'Arith' and siglist 'QuantitativeVariable,numeric'
  generic 'Arith' and siglist 'numeric,QuantitativeVariable'
  generic 'Compare' and siglist 'CategoricalVariable,character'
  generic 'Compare' and siglist 'QuantitativeVariable,character'
  generic 'Compare' and siglist 'character,CategoricalVariable'
  generic 'Compare' and siglist 'character,QuantitativeVariable'
  generic 'Dataset.version' and siglist 'Dataset'
  generic 'Variable.version' and siglist 'Variable'
  generic '[' and siglist 'Dataset'
  generic '[' and siglist 'Variable'
  generic '[<-' and siglist 'Dataset'
  generic '[<-' and siglist 'Variable'
  generic '[[' and siglist 'Dataset'
  generic '[[<-' and siglist 'Dataset'
  generic 'allvalues' and siglist 'Dataset'
  generic 'as.character' and siglist 'TimestampVariable'
  generic 'as.data.frame' and siglist 'CategoricalVariable'
  generic 'as.data.frame' and siglist 'Dataset'
  generic 'as.data.frame' and siglist 'ScaleVariable'
  generic 'as.data.frame' and siglist 'Statdf'
  generic 'as.data.frame' and siglist 'TimestampVariable'
  generic 'as.missing' and siglist 'character,BinaryVariable'
  generic 'as.missing' and siglist 'character,NominalVariable'
  generic 'as.missing' and siglist 'character,OrdinalVariable'
  generic 'as.missing' and siglist 'character,ScaleVariable'
  generic 'as.missing' and siglist 'character,TimestampVariable'
  generic 'as.missing' and siglist 'numeric,BinaryVariable'
  generic 'as.missing' and siglist 'numeric,NominalVariable'
  generic 'as.missing' and siglist 'numeric,OrdinalVariable'
  generic 'as.missing' and siglist 'numeric,ScaleVariable'
  generic 'as.missing' and siglist 'numeric,TimestampVariable'
  generic 'as.numeric' and siglist 'ScaleVariable'
  generic 'as.numeric' and siglist 'TimestampVariable'
  generic 'as.valid' and siglist 'character,BinaryVariable'
  generic 'as.valid' and siglist 'character,NominalVariable'
  generic 'as.valid' and siglist 'character,OrdinalVariable'
  generic 'as.valid' and siglist 'character,ScaleVariable'
  generic 'as.valid' and siglist 'character,TimestampVariable'
  generic 'as.valid' and siglist 'numeric,BinaryVariable'
  generic 'as.valid' and siglist 'numeric,NominalVariable'
  generic 'as.valid' and siglist 'numeric,OrdinalVariable'
  generic 'as.valid' and siglist 'numeric,ScaleVariable'
  generic 'as.valid' and siglist 'numeric,TimestampVariable'
  generic 'as.vector' and siglist 'CategoricalVariable'
  generic 'as.vector' and siglist 'OrderedVariable'
  generic 'as.vector' and siglist 'ScaleVariable'
  generic 'as.vector' and siglist 'TimestampVariable'
  generic 'binaries' and siglist 'Dataset'
  generic 'checkvars<-' and siglist 'Dataset'
  generic 'codes' and siglist 'Variable'
  generic 'codes<-' and siglist 'Variable'
  generic 'cut' and siglist 'QuantitativeVariable'
  generic 'db.author' and siglist 'Dataset'
  generic 'db.author<-' and siglist 'Dataset'
  generic 'db.citation' and siglist 'Dataset'
  generic 'db.citation<-' and siglist 'Dataset'
  generic 'db.contact.email' and siglist 'Dataset'
  generic 'db.contact.email<-' and siglist 'Dataset'
  generic 'db.details' and siglist 'Dataset'
  generic 'db.details<-' and siglist 'Dataset'
  generic 'db.license' and siglist 'Dataset'
  generic 'db.license<-' and siglist 'Dataset'
  generic 'db.manager' and siglist 'Dataset'
  generic 'db.manager<-' and siglist 'Dataset'
  generic 'db.release.date' and siglist 'Dataset'
  generic 'db.release.date<-' and siglist 'Dataset'
  generic 'db.website' and siglist 'Dataset'
  generic 'db.website<-' and siglist 'Dataset'
  generic 'description' and siglist 'Tree'
  generic 'description<-' and siglist 'Dataset'
  generic 'description<-' and siglist 'Variable'
  generic 'distrib' and siglist 'CategoricalVariable'
  generic 'distrib' and siglist 'Dataset'
  generic 'expected' and siglist 'Bivan'
  generic 'export' and siglist 'Dataset'
  generic 'exportPDF' and siglist 'RegLog'
  generic 'exportPDF' and siglist 'Tree'
  generic 'exportTAB' and siglist 'RegLog'
  generic 'format' and siglist 'TimestampVariable'
  generic 'format<-' and siglist 'TimestampVariable'
  generic 'formatc' and siglist 'Statdf'
  generic 'formatc<-' and siglist 'Statdf'
  generic 'frequencies' and siglist 'CategoricalVariable,ANY'
  generic 'frequencies' and siglist 'QuantitativeVariable,ANY'
  generic 'frequencies' and siglist 'character,Dataset'
  generic 'global' and siglist 'Bivan'
  generic 'head' and siglist 'Dataset'
  generic 'infos' and siglist 'Dataset'
  generic 'is.weighted' and siglist 'Dataset'
  generic 'length' and siglist 'Variable'
  generic 'max' and siglist 'ScaleVariable'
  generic 'max' and siglist 'TimestampVariable'
  generic 'mean' and siglist 'ScaleVariable'
  generic 'mean' and siglist 'TimestampVariable'
  generic 'median' and siglist 'TimestampVariable'
  generic 'merge' and siglist 'Dataset,Dataset'
  generic 'min' and siglist 'ScaleVariable'
  generic 'min' and siglist 'TimestampVariable'
  generic 'missings' and siglist 'Dataset'
  generic 'missings' and siglist 'Variable'
  generic 'missings<-' and siglist 'Variable'
  generic 'na' and siglist 'Statdf'
  generic 'na<-' and siglist 'Statdf'
  generic 'name' and siglist 'Dataset'
  generic 'name' and siglist 'Statdf'
  generic 'name' and siglist 'summary.Statdf'
  generic 'name<-' and siglist 'Dataset'
  generic 'name<-' and siglist 'Statdf'
  generic 'name<-' and siglist 'summary.Statdf'
  generic 'names' and siglist 'Dataset'
  generic 'names<-' and siglist 'Dataset'
  generic 'nan' and siglist 'Statdf'
  generic 'nan<-' and siglist 'Statdf'
  generic 'nbinaries' and siglist 'Dataset'
  generic 'ncol' and siglist 'Dataset'
  generic 'nindividual' and siglist 'Dataset'
  generic 'nmissings' and siglist 'CategoricalVariable'
  generic 'nmissings' and siglist 'ScaleVariable'
  generic 'nmissings' and siglist 'TimestampVariable'
  generic 'nmissings' and siglist 'Variable'
  generic 'nnominals.exact' and siglist 'Dataset'
  generic 'nnominals' and siglist 'Dataset'
  generic 'nominals.exact' and siglist 'Dataset'
  generic 'nominals' and siglist 'Dataset'
  generic 'nordinals' and siglist 'Dataset'
  generic 'nquantitatives' and siglist 'Dataset'
  generic 'nrow' and siglist 'Dataset'
  generic 'nroww' and siglist 'Dataset'
  generic 'nscales.exact' and siglist 'Dataset'
  generic 'nscales' and siglist 'Dataset'
  generic 'ntimes' and siglist 'Dataset'
  generic 'nvalids' and siglist 'Variable'
  generic 'nvalues' and siglist 'CategoricalVariable'
  generic 'nvalues' and siglist 'Variable'
  generic 'nvariable' and siglist 'Dataset'
  generic 'nweightings' and siglist 'Dataset'
  generic 'observed' and siglist 'Bivan'
  generic 'only.complete' and siglist 'character,Dataset'
  generic 'ordinals' and siglist 'Dataset'
  generic 'origin' and siglist 'TimestampVariable'
  generic 'origin<-' and siglist 'TimestampVariable'
  generic 'plot' and siglist 'Tree'
  generic 'plot' and siglist 'Variable'
  generic 'plot' and siglist 'character'
  generic 'predictors' and siglist 'Bivan'
  generic 'print' and siglist 'Bivan'
  generic 'print' and siglist 'CategoricalVariable'
  generic 'print' and siglist 'Dataset'
  generic 'print' and siglist 'RegLog'
  generic 'print' and siglist 'ScaleVariable'
  generic 'print' and siglist 'Statdf'
  generic 'print' and siglist 'TimestampVariable'
  generic 'print' and siglist 'Tree'
  generic 'print' and siglist 'Tree.control'
  generic 'pvalues' and siglist 'Statdf'
  generic 'pvalues<-' and siglist 'Statdf'
  generic 'qualitatives' and siglist 'Dataset'
  generic 'quantitatives' and siglist 'Dataset'
  generic 'recode' and siglist 'CategoricalVariable'
  generic 'rename' and siglist 'Dataset'
  generic 'rename' and siglist 'Variable'
  generic 'row.names' and siglist 'Dataset'
  generic 'row.names<-' and siglist 'Dataset'
  generic 'scales.exact' and siglist 'Dataset'
  generic 'scales' and siglist 'Dataset'
  generic 'sd' and siglist 'ScaleVariable'
  generic 'sdf' and siglist 'Statdf'
  generic 'sdf<-' and siglist 'Statdf,data.frame'
  generic 'show' and siglist 'Bivan'
  generic 'show' and siglist 'CategoricalVariable'
  generic 'show' and siglist 'Dataset'
  generic 'show' and siglist 'RegLog'
  generic 'show' and siglist 'ScaleVariable'
  generic 'show' and siglist 'Statdf'
  generic 'show' and siglist 'TimestampVariable'
  generic 'show' and siglist 'Tree'
  generic 'show' and siglist 'Tree.control'
  generic 'show' and siglist 'Variable'
  generic 'spatial.country' and siglist 'Dataset'
  generic 'spatial.country<-' and siglist 'Dataset'
  generic 'spatial.variable' and siglist 'Dataset'
  generic 'spatial.variable<-' and siglist 'Dataset'
  generic 'spatial' and siglist 'Dataset'
  generic 'std.res' and siglist 'Bivan'
  generic 'subset' and siglist 'Dataset'
  generic 'sum' and siglist 'QuantitativeVariable'
  generic 'summary' and siglist 'BinaryVariable'
  generic 'summary' and siglist 'Dataset'
  generic 'summary' and siglist 'NominalVariable'
  generic 'summary' and siglist 'OrderedVariable'
  generic 'summary' and siglist 'ScaleVariable'
  generic 'summary' and siglist 'Statdf'
  generic 'summary' and siglist 'TimestampVariable'
  generic 'table' and siglist 'ANY'
  generic 'tail' and siglist 'Dataset'
  generic 'target' and siglist 'Bivan'
  generic 'thresholds' and siglist 'Statdf'
  generic 'thresholds<-' and siglist 'Statdf'
  generic 'times' and siglist 'Dataset'
  generic 'v' and siglist 'CategoricalVariable'
  generic 'v' and siglist 'Dataset'
  generic 'v' and siglist 'OrderedVariable'
  generic 'v' and siglist 'ScaleVariable'
  generic 'v' and siglist 'Statdf'
  generic 'v' and siglist 'TimestampVariable'
  generic 'v' and siglist 'summary.Statdf'
  generic 'valid' and siglist 'Dataset'
  generic 'valid' and siglist 'Variable'
  generic 'valids.permut' and siglist 'Variable,character,character'
  generic 'valids.permut' and siglist 'Variable,numeric,numeric'
  generic 'valids.reverse' and siglist 'Variable'
  generic 'valids' and siglist 'Variable'
  generic 'valids<-' and siglist 'Variable'
  generic 'value' and siglist 'character,Variable'
  generic 'value' and siglist 'numeric,Variable'
  generic 'values' and siglist 'Variable'
  generic 'variables' and siglist 'Dataset'
  generic 'variables<-' and siglist 'Dataset'
  generic 'weighting<-' and siglist 'Bivan,ANY'
  generic 'weighting<-' and siglist 'Dataset,WeightingVariable'
  generic 'weighting<-' and siglist 'Dataset,character'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'bivan':
bivan
  Code: function(formula, data, chi2 = T, phi = F, tschuprow = F,
                 cramer.v = T, pearson.contingency = F,
                 likelihood.ratio = F, gk.lambda = F, gk.tau = F,
                 gk.tau.sqrt = T, theil.u = F, theil.u.sqrt = F,
                 kendall.tau.a = F, kendall.tau.b = F, stuart.tau.c =
                 F, gk.gamma = F, somers.d = T, wilson.e = F,
                 spearman.rho = F, std.res = T, quiet = F)
  Docs: function(formula, data, chi2 = T, phi = F, tschuprow = F,
                 cramer.v = T, pearson.contingency = F,
                 likelihood.ratio = F, gk.lambda = F, gk.tau = F,
                 gk.tau.sqrt = T, theil.u = F, theil.u.sqrt = F,
                 kendall.tau.a = F, kendall.tau.b = F, stuart.tau.c =
                 F, gk.gamma = F, somers.d = T, wilson.e = F,
                 calc.spearman.rho = F, std.res = T, quiet = F)
  Argument names in code not in docs:
    spearman.rho
  Argument names in docs not in code:
    calc.spearman.rho
  Mismatches in argument names:
    Position: 20 Code: spearman.rho Docs: calc.spearman.rho

Codoc mismatches from documentation object 'exportPDF':
exportPDF
  Code: function(object, pdfSavingName, graphics = F,
                 description.chlength = 300, valids.chlength = 40,
                 valids.cut.percent = 0.5, sorting = "decreasing",
                 dateformat, page.orientation = "landscape",
                 latexPackages = NULL, width.id = 0.5, width.varname =
                 1.5, width.description = 10.5, width.n = 0.8, width.na
                 = 1.2, width.valids = 5, width.valids.nao.inc = 5,
                 width.min = 1.25, width.max = 1.25, width.mean = 1.25,
                 width.stddev = 1.25, plot.tree.ratio = 1, keepTex = F,
                 openPDF = T, ...)
  Docs: function(object, pdfSavingName, graphics = F,
                 description.chlength = 300, valids.chlength = 40,
                 valids.cut.percent = 0.5, sorting = "decreasing",
                 dateformat, latexPackages = NULL, width.id = 0.5,
                 width.varname = 1.5, width.description = 10.5, width.n
                 = 0.8, width.na = 1.2, width.valids = 5,
                 width.valids.nao.inc = 5, width.min = 1.25, width.max
                 = 1.25, width.mean = 1.25, width.stddev = 1.25,
                 keepTex = F, openPDF = T, ...)
  Argument names in code not in docs:
    page.orientation plot.tree.ratio
  Mismatches in argument names (first 3):
    Position: 9 Code: page.orientation Docs: latexPackages
    Position: 10 Code: latexPackages Docs: width.id
    Position: 11 Code: width.id Docs: width.varname

S4 class codoc mismatches from documentation object 'summary.Statdf-class':
Slots for class 'summary.Statdf'
  Code: .Data .S3Class name names row.names thresholds
  Inherited: .Data names row.names .S3Class
  Docs: .Data .S3Class names row.names thresholds

* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'seq.count':
  ‘seq.count’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in ‘inst/doc’:
  ‘Dataset-vignette-overview.Rnw’
A ‘vignettes’ directory is required as from R 3.1.0
and these will not be indexed nor checked
* checking examples ... [1s/2s] OK
* checking PDF version of manual ... OK

WARNING: There were 7 warnings.
NOTE: There were 6 notes.
See
  ‘/mnt/building/build_2014-05-06-16-04/RF_PKG_CHECK/PKGS/Rsocialdata0.Rcheck/00check.log’
for details.

Run time: 95.2 seconds.

Additional Logs:   00install.out
Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge