R Development Page

eatTools log file (check_x86_64_linux)

Wed Feb 20 11:11:34 2019: Checking package eatTools (SVN revision 769) ...
* using log directory ‘/srv/rf/building/build_2019-02-20-11-09/RF_PKG_CHECK/PKGS/eatTools.Rcheck’
* using R version 3.5.2 Patched (2019-02-19 r76133)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘eatTools/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘eatTools’ version ‘0.0.17’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘eat authors ’

New submission

No package encoding and non-ASCII characters in the following R files:
  R/asNumericIfPossible.R
    17: ### set.numeric: soll transformierter Datensatz zurckgegeben werden (DEFAULT), oder TRUE-FALSE-Vektor, ob es geht
    19: ### maintain.factor.scores: wenn Faktoren auch transformiert werden sollen, sollen ihre Faktorwerte bernommen werden?
    54:   options(warn = originWarnLevel)                                     ### danach: schalte Warnungen zurck in Ausgangszustand
    63:   ### hier werden alle Variablen (auch Faktoren, wenn maintain.factor.scores = FALSE) ggf. gendert
    70:   ### hier werden ausschlielich FAKTOREN, wenn maintain.factor.scores = TRUE, ggf. gendert
  R/collapseMissings.R
    10: #      dat (data.frame) :  aufgelster zkd-Dataset finished
    23: # 03.11.2011 KS: nicht-character-Spalten berspringen
    58: 	# Plausicheck: Dataframe bergeben?
  R/commonItems.R
    24: 		# nur ab 2 Gruppen weitermachen , sonst NULL zurckgeben	
    30: 						# dat <- collapseMissings ( dat , mis.rule ) # das hier wre am besten
    32: # !!! temporres workaraound, bis collapseMissings berarbeitet		
    40: 				# Datenstze reduzieren
  R/crop.R
    31: # ( crop ( "aaaKFLSJFKJaa" , "a" ) )
  R/dapply.R
    38: 				# wenn fun eine einzelne Funktion ist, Liste drausmachen, um spter drber zu lapplyen
    115: 						# Ausgabe Lnge der Zelle
    153: 								# wenn ganzer data.frame bergeben werden soll, diesen listen
    222: 										# Einzeldatenstze nach long
    261: 				# ggf. hinzugefgte split.var lschen
    277: 				# numerische split.vars wieder zurcksetzen
  R/make.dummies.R
    25: 						# wird colname.as.prefix = TRUE gesetzt, da Variablen-Namen nicht mit einer Zahl anfangen knnen,
    27: 						# dieses wird entfernt, weil das dann schner ist
    52: 						# falls numerisch war, noch die hsslichen "X" aus Var-Name raus
    56: 						# mit Grobuchstaben anfangen
    96: 				# entspricht cbind deparse.level = 0 ( was aber irgendwie nicht so einfach an do.call bergebbar ist
  R/rmNA.R
    104: 		# wieder zum Dataframe machen, da t() nur Matrix zurckgibt
    112: 		# Hinweis: removeNA ist standardmig auf rows lschen programmiert,
    113: 		# deshalb der ganze Spa mit dem transponieren
    116: 		# nur bei method="remove" rcktransponieren, da method="identify" ne Liste liefert,
    123: 				# ursprngliche rownames wieder herstellen
    216: # mode ("rows" oder "cols") hinzugefgt um entsprechende verbosemeldungen zu bekommen
    230: 		# wenn Matrix, diese in Dataframe wandeln, fr spter merken ob Matrix zurckgegeben werden soll
    264: 		# zu lschende rows identifizieren
    278: 		# zu lschende Zeilen
    284: 				# Zeilen lschen
    296: 				# falls Matrix als Input, in Matrix zurckwandeln
    303: 						# Liste oder Vector mit identifizierten Rows zurckgeben
  R/set.col.type.R
    48: 				# wenn noch was brig dann umwandeln
  R/shade.between.lines.R
    8: 		# Levels fr die Polygon-Gruppe: mssen so viele sein wie Werte auf x-Achse
    46: 		# spter zum sortieren
  R/sunk.R
    9: #				text.on.error (logical, default TRUE): wenn TRUE und Text bergeben wird (erzeugt error) dann wird dieser
    36: 				# warten bis gelscht
    48: 				# Sonderflle abfangen

The Title field is just the package name: provide a real title.

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘eatTools’ can be installed ... [7s/5s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'library' or 'require' call not declared from: ‘plyr’
'library' or 'require' call to ‘plyr’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/10s] NOTE
dapply : schleifeD: no visible global function definition for
  ‘flush.console’
dapply : schleifeD : appl.fun: no visible global function definition
  for ‘flush.console’
install.eat.dep: no visible global function definition for
  ‘install.packages’
shade.between.lines: no visible global function definition for ‘.’
shade.between.lines: no visible binding for global variable
  ‘polygr.group’
Undefined global functions or variables:
  . flush.console install.packages polygr.group
Consider adding
  importFrom("utils", "flush.console", "install.packages")
to your NAMESPACE file.
* checking Rd files ... NOTE
prepare_Rd: dapply.Rd:27-28: Dropping empty section \details
prepare_Rd: make.dummies.Rd:31-32: Dropping empty section \details
prepare_Rd: multiseq.Rd:17-18: Dropping empty section \details
prepare_Rd: reinsort.col.Rd:18-19: Dropping empty section \details
prepare_Rd: rmNAcols.Rd:24-25: Dropping empty section \details
prepare_Rd: rmNAcols.Rd:29-31: Dropping empty section \references
prepare_Rd: rmNArows.Rd:23-24: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'dapply.Rd':
  \usage lines wider than 90 characters:
     dapply ( data , split.vars = NULL , fun = mean , wide = TRUE , drop = TRUE , all.level = FALSE , push.data.frame = FALSE , verbose = FA ... [TRUNCATED]
  \examples lines wider than 100 characters:
     dapply ( data = d[,c("sex","age","resp1")] , split.vars = c("sex","age") , fun = mean , wide = FALSE )
     dapply ( data = d[,c("sex","age","resp1","resp2")] , split.vars = c("sex","age") , fun = mean , wide = FALSE )
     dapply ( data = d[,c("sex","age","resp1","resp2")] , split.vars = c("sex","age") , fun = twofun1 , wide = FALSE )
     dapply ( data = d[,c("sex","age","resp1")] , split.vars = c("sex","age") , fun = table , wide = TRUE )
     dapply ( data = d[,c("sex","age","resp1")] , split.vars = c("sex","age") , fun = table , wide = FALSE )
     dapply ( data = d[,c("sex","age","resp1","resp2")] , split.vars = c("sex","age") , fun = table , wide = TRUE )
     dapply ( data = d[,c("sex","age","resp1","resp2")] , split.vars = c("sex","age") , fun = table , wide = FALSE )
     dapply ( data = d[,c("sex","age","resp1","resp2")] , split.vars = c("sex","age") , fun = twofun2 , wide = TRUE )
     dapply ( data = d[,c("sex","age","resp1","resp2")] , split.vars = c("sex","age") , fun = twofun2 , wide = FALSE )
     dapply ( data = d[,c("sex","resp1","resp2")] , split.vars = c("sex") , fun = calc.cor , push.data.frame = TRUE )

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'science1.item.characteristics.Rd':
  ‘automateModels’

Missing link or links in documentation object 'science1.scales.Rd':
  ‘automateModels’

Missing link or links in documentation object 'science1.testlets.Rd':
  ‘automateModels’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'dapply':
dapply
  Code: function(data, split.vars = NULL, fun = mean, new.name = NULL,
                 wide = TRUE, drop = TRUE, all.level = FALSE,
                 push.data.frame = FALSE, verbose = FALSE, ...)
  Docs: function(data, split.vars = NULL, fun = mean, wide = TRUE, drop
                 = TRUE, all.level = FALSE, push.data.frame = FALSE,
                 verbose = FALSE, ...)
  Argument names in code not in docs:
    new.name
  Mismatches in argument names (first 3):
    Position: 4 Code: new.name Docs: wide
    Position: 5 Code: wide Docs: drop
    Position: 6 Code: drop Docs: all.level

* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'shade.between.lines'
  ‘d’
Documented arguments not in \usage in documentation object 'shade.between.lines':
  ‘data’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [4s/3s] OK
* checking PDF version of manual ... OK
* DONE

Status: 4 WARNINGs, 5 NOTEs
See
  ‘/srv/rf/building/build_2019-02-20-11-09/RF_PKG_CHECK/PKGS/eatTools.Rcheck/00check.log’
for details.


Run time: 81.05 seconds.